Wall clock time and date at job start Fri Apr 10 2020 22:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76195 * 103.00283 * 2 1 4 4 C 1.39061 * 120.03977 * 0.02562 * 3 2 1 5 5 C 1.38123 * 120.06958 * 179.97438 * 4 3 2 6 6 C 1.38188 * 120.15274 * 359.67728 * 5 4 3 7 7 C 1.38978 * 120.08650 * 0.59596 * 6 5 4 8 8 N 1.39730 * 120.03640 * 179.69779 * 7 6 5 9 9 C 1.34773 * 119.99921 * 214.83378 * 8 7 6 10 10 O 1.21381 * 119.99853 * 355.38763 * 9 8 7 11 11 C 1.49355 * 119.99942 * 175.38875 * 9 8 7 12 12 O 1.21361 * 119.99746 * 359.97438 * 11 9 8 13 13 N 1.34779 * 119.99900 * 179.72508 * 11 9 8 14 14 C 1.46498 * 119.99846 * 180.27377 * 13 11 9 15 15 H 1.09003 * 109.47169 * 324.99674 * 14 13 11 16 16 C 1.52998 * 109.46960 * 85.00059 * 14 13 11 17 17 C 1.50701 * 109.47038 * 205.00061 * 14 13 11 18 18 H 1.08001 * 120.00031 * 0.02562 * 17 14 13 19 19 C 1.37876 * 119.99855 * 179.97438 * 17 14 13 20 20 N 1.31515 * 120.00070 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 119.99922 * 179.97438 * 19 17 14 22 22 H 1.48507 * 109.46886 * 90.00263 * 21 19 17 23 23 H 1.48495 * 109.47014 * 209.99835 * 21 19 17 24 24 H 1.48496 * 109.46978 * 330.00415 * 21 19 17 25 25 C 1.38796 * 119.92625 * 359.42814 * 7 6 5 26 26 H 1.09004 * 109.46697 * 59.99775 * 1 2 3 27 27 H 1.08994 * 109.47315 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47316 * 300.00080 * 1 2 3 29 29 H 1.07991 * 119.96239 * 359.97438 * 4 3 2 30 30 H 1.07990 * 119.92329 * 179.97438 * 5 4 3 31 31 H 1.08004 * 119.95424 * 180.32230 * 6 5 4 32 32 H 0.96998 * 119.99998 * 34.83738 * 8 7 6 33 33 H 0.96997 * 119.99985 * 0.27749 * 13 11 9 34 34 H 1.09002 * 109.47111 * 299.99539 * 16 14 13 35 35 H 1.08997 * 109.47066 * 59.99944 * 16 14 13 36 36 H 1.09003 * 109.46964 * 180.02562 * 16 14 13 37 37 H 0.96998 * 119.99790 * 179.97438 * 20 19 17 38 38 H 1.07998 * 120.07920 * 180.25144 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1941 2.6659 0.0005 5 6 1.5041 4.0119 0.0011 6 6 2.8244 4.4201 0.0078 7 6 3.8452 3.4770 0.0016 8 7 5.1798 3.8910 0.0020 9 6 6.1063 3.1790 -0.6696 10 8 5.7982 2.1340 -1.2048 11 6 7.5122 3.6760 -0.7554 12 8 7.8200 4.7210 -0.2207 13 7 8.4400 2.9612 -1.4223 14 6 9.8203 3.4457 -1.5014 15 1 9.8206 4.5340 -1.5613 16 6 10.5882 3.0032 -0.2542 17 6 10.4835 2.8750 -2.7284 18 1 9.9318 2.2176 -3.3840 19 6 11.7942 3.1930 -3.0146 20 7 12.4658 3.9940 -2.2165 21 14 12.6164 2.4851 -4.5352 22 1 12.4036 3.4009 -5.6847 23 1 14.0725 2.3341 -4.2856 24 1 12.0268 1.1577 -4.8441 25 6 3.5376 2.1236 0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 0.1613 2.3503 0.0005 30 1 0.7130 4.7470 0.0011 31 1 3.0631 5.4734 0.0135 32 1 5.4394 4.6906 0.4857 33 1 8.1938 2.1262 -1.8500 34 1 10.1086 3.4161 0.6333 35 1 10.5880 1.9149 -0.1944 36 1 11.6151 3.3641 -0.3128 37 1 13.3881 4.2174 -2.4177 38 1 4.3289 1.3886 -0.0002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123049937.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:02:32 Heat of formation + Delta-G solvation = -41.697172 kcal Electronic energy + Delta-G solvation = -22031.542387 eV Core-core repulsion = 18579.389975 eV Total energy + Delta-G solvation = -3452.152412 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.098 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.84118 -39.13839 -37.87969 -35.43197 -34.64490 -32.44124 -31.23796 -30.49414 -29.23827 -28.83433 -25.37918 -24.91733 -23.30394 -22.38979 -20.78896 -19.66910 -18.89539 -17.98244 -16.72819 -16.46659 -16.21195 -15.75021 -15.46537 -15.23864 -14.80886 -14.49655 -14.23176 -14.14463 -13.87590 -13.53787 -13.27214 -12.97096 -12.87728 -12.50285 -12.15908 -11.83089 -11.82317 -11.24335 -11.11342 -11.03205 -10.85016 -10.76331 -10.40977 -10.35306 -10.28690 -9.81433 -9.18259 -9.10665 -8.63981 -8.45178 -8.16061 -7.62068 -6.18885 -4.28544 0.87098 1.11009 1.25859 1.82512 2.16296 2.62034 3.23504 3.30189 3.33326 3.42029 3.68936 4.03591 4.32274 4.63616 4.70651 4.71169 4.81021 4.94799 5.03655 5.14371 5.23582 5.28679 5.31456 5.56068 5.98373 6.07702 6.11622 6.17890 6.69574 6.72049 6.82295 6.99489 7.03874 7.18686 7.37364 7.60163 7.74783 7.86660 8.03076 8.40262 8.58048 8.82568 9.38617 10.87187 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.023739 B = 0.002742 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.199405 B =10209.650576 C =10894.259327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.108 6.108 3 C -0.068 4.068 4 C -0.152 4.152 5 C -0.081 4.081 6 C -0.147 4.147 7 C 0.167 3.833 8 N -0.652 5.652 9 C 0.507 3.493 10 O -0.501 6.501 11 C 0.496 3.504 12 O -0.535 6.535 13 N -0.667 5.667 14 C 0.262 3.738 15 H 0.055 0.945 16 C -0.149 4.149 17 C -0.537 4.537 18 H 0.065 0.935 19 C 0.068 3.932 20 N -0.883 5.883 21 Si 0.905 3.095 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.272 1.272 25 C -0.102 4.102 26 H 0.084 0.916 27 H 0.107 0.893 28 H 0.083 0.917 29 H 0.124 0.876 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.425 0.575 33 H 0.403 0.597 34 H 0.016 0.984 35 H 0.030 0.970 36 H 0.095 0.905 37 H 0.266 0.734 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.132 -2.788 6.015 24.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.134 5.866 3 C -0.181 4.181 4 C -0.176 4.176 5 C -0.102 4.102 6 C -0.170 4.170 7 C 0.071 3.929 8 N -0.299 5.299 9 C 0.290 3.710 10 O -0.375 6.375 11 C 0.274 3.726 12 O -0.413 6.413 13 N -0.315 5.315 14 C 0.161 3.839 15 H 0.072 0.928 16 C -0.207 4.207 17 C -0.575 4.575 18 H 0.083 0.917 19 C -0.136 4.136 20 N -0.521 5.521 21 Si 0.732 3.268 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.128 4.128 26 H 0.103 0.897 27 H 0.126 0.874 28 H 0.102 0.898 29 H 0.142 0.858 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.263 0.737 33 H 0.237 0.763 34 H 0.036 0.964 35 H 0.050 0.950 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -22.162 -3.787 5.987 23.267 hybrid contribution -0.373 0.818 -0.787 1.195 sum -22.535 -2.969 5.200 23.318 Atomic orbital electron populations 1.23686 0.95239 1.07053 1.05603 1.85719 1.05719 1.02809 1.92372 1.21574 0.96053 0.96712 1.03795 1.21117 0.98066 0.93175 1.05291 1.20799 0.95735 0.95239 0.98396 1.20993 0.92031 0.99164 1.04776 1.17625 0.83328 0.92738 0.99257 1.43236 1.05381 1.30345 1.50915 1.21033 0.87540 0.84263 0.78116 1.90742 1.80945 1.21781 1.43990 1.19619 0.85175 0.85703 0.82123 1.90732 1.80895 1.23095 1.46627 1.46516 1.11155 1.24434 1.49434 1.18992 0.73579 0.96610 0.94735 0.92771 1.22101 1.03809 0.98934 0.95880 1.21195 0.97492 1.30787 1.08069 0.91713 1.24877 0.96866 0.94761 0.97077 1.69891 1.10741 1.34596 1.36824 0.86387 0.78491 0.79485 0.82431 1.20479 1.20999 1.19686 1.20898 0.95251 0.95136 1.01492 0.89730 0.87424 0.89769 0.85840 0.85209 0.85046 0.73697 0.76268 0.96448 0.95041 0.88683 0.92431 0.83522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.15 101.05 0.92 0.01 16 2 S -0.11 -1.15 22.56 -107.50 -2.43 -3.58 16 3 C -0.07 -0.81 6.11 -39.06 -0.24 -1.05 16 4 C -0.15 -1.47 9.36 -39.32 -0.37 -1.84 16 5 C -0.08 -0.73 10.03 -39.64 -0.40 -1.13 16 6 C -0.15 -1.52 9.96 -39.33 -0.39 -1.91 16 7 C 0.17 2.18 6.29 -83.78 -0.53 1.65 16 8 N -0.65 -9.03 5.32 -10.31 -0.05 -9.08 16 9 C 0.51 8.65 7.73 -11.63 -0.09 8.56 16 10 O -0.50 -9.22 13.91 5.47 0.08 -9.15 16 11 C 0.50 9.86 7.85 -11.63 -0.09 9.77 16 12 O -0.53 -11.64 16.14 5.49 0.09 -11.55 16 13 N -0.67 -14.24 5.06 -55.40 -0.28 -14.52 16 14 C 0.26 6.54 2.56 -69.08 -0.18 6.37 16 15 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 16 C -0.15 -3.60 9.26 37.16 0.34 -3.26 16 17 C -0.54 -14.15 8.73 -34.44 -0.30 -14.45 16 18 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 19 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 20 N -0.88 -24.36 11.32 55.43 0.63 -23.74 16 21 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 C -0.10 -1.43 8.44 -39.16 -0.33 -1.76 16 26 H 0.08 0.47 7.75 -51.92 -0.40 0.07 16 27 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.44 7.74 -51.93 -0.40 0.04 16 29 H 0.12 0.88 5.87 -52.49 -0.31 0.58 16 30 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 31 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 32 H 0.42 5.12 8.30 -40.82 -0.34 4.79 16 33 H 0.40 8.05 8.01 -40.82 -0.33 7.72 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 37 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.15 2.31 6.22 -52.49 -0.33 1.98 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -30.15 340.07 -8.07 -38.22 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -4.47 Total: 10.09 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -1.74 Total: 2.67 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: 0.29 Total: -47.34 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: 0.16 Total: -20.70 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: -1.15 SS G_CDS: -2.43 Total: -3.58 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.15 -8.07 -38.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123049937.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.472 kcal (2) G-P(sol) polarization free energy of solvation -30.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds