Wall clock time and date at job start Fri Apr 10 2020 22:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76195 * 103.00283 * 2 1 4 4 C 1.39061 * 120.03977 * 0.02562 * 3 2 1 5 5 C 1.38123 * 120.06958 * 179.97438 * 4 3 2 6 6 C 1.38188 * 120.15274 * 359.67728 * 5 4 3 7 7 C 1.38978 * 120.08650 * 0.59596 * 6 5 4 8 8 N 1.39730 * 120.03640 * 179.69779 * 7 6 5 9 9 C 1.34773 * 119.99921 * 214.83378 * 8 7 6 10 10 O 1.21381 * 119.99853 * 355.38763 * 9 8 7 11 11 C 1.49355 * 119.99942 * 175.38875 * 9 8 7 12 12 O 1.21361 * 119.99746 * 359.97438 * 11 9 8 13 13 N 1.34779 * 119.99900 * 179.72508 * 11 9 8 14 14 C 1.46498 * 119.99846 * 180.27377 * 13 11 9 15 15 H 1.09003 * 109.47169 * 324.99674 * 14 13 11 16 16 C 1.52998 * 109.46960 * 85.00059 * 14 13 11 17 17 C 1.50701 * 109.47038 * 205.00061 * 14 13 11 18 18 H 1.08001 * 120.00031 * 0.02562 * 17 14 13 19 19 C 1.37876 * 119.99855 * 179.97438 * 17 14 13 20 20 N 1.31515 * 120.00070 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 119.99922 * 179.97438 * 19 17 14 22 22 H 1.48507 * 109.46886 * 90.00263 * 21 19 17 23 23 H 1.48495 * 109.47014 * 209.99835 * 21 19 17 24 24 H 1.48496 * 109.46978 * 330.00415 * 21 19 17 25 25 C 1.38796 * 119.92625 * 359.42814 * 7 6 5 26 26 H 1.09004 * 109.46697 * 59.99775 * 1 2 3 27 27 H 1.08994 * 109.47315 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47316 * 300.00080 * 1 2 3 29 29 H 1.07991 * 119.96239 * 359.97438 * 4 3 2 30 30 H 1.07990 * 119.92329 * 179.97438 * 5 4 3 31 31 H 1.08004 * 119.95424 * 180.32230 * 6 5 4 32 32 H 0.96998 * 119.99998 * 34.83738 * 8 7 6 33 33 H 0.96997 * 119.99985 * 0.27749 * 13 11 9 34 34 H 1.09002 * 109.47111 * 299.99539 * 16 14 13 35 35 H 1.08997 * 109.47066 * 59.99944 * 16 14 13 36 36 H 1.09003 * 109.46964 * 180.02562 * 16 14 13 37 37 H 0.96998 * 119.99790 * 179.97438 * 20 19 17 38 38 H 1.07998 * 120.07920 * 180.25144 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1941 2.6659 0.0005 5 6 1.5041 4.0119 0.0011 6 6 2.8244 4.4201 0.0078 7 6 3.8452 3.4770 0.0016 8 7 5.1798 3.8910 0.0020 9 6 6.1063 3.1790 -0.6696 10 8 5.7982 2.1340 -1.2048 11 6 7.5122 3.6760 -0.7554 12 8 7.8200 4.7210 -0.2207 13 7 8.4400 2.9612 -1.4223 14 6 9.8203 3.4457 -1.5014 15 1 9.8206 4.5340 -1.5613 16 6 10.5882 3.0032 -0.2542 17 6 10.4835 2.8750 -2.7284 18 1 9.9318 2.2176 -3.3840 19 6 11.7942 3.1930 -3.0146 20 7 12.4658 3.9940 -2.2165 21 14 12.6164 2.4851 -4.5352 22 1 12.4036 3.4009 -5.6847 23 1 14.0725 2.3341 -4.2856 24 1 12.0268 1.1577 -4.8441 25 6 3.5376 2.1236 0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 0.1613 2.3503 0.0005 30 1 0.7130 4.7470 0.0011 31 1 3.0631 5.4734 0.0135 32 1 5.4394 4.6906 0.4857 33 1 8.1938 2.1262 -1.8500 34 1 10.1086 3.4161 0.6333 35 1 10.5880 1.9149 -0.1944 36 1 11.6151 3.3641 -0.3128 37 1 13.3881 4.2174 -2.4177 38 1 4.3289 1.3886 -0.0002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123049937.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:02:31 Heat of formation + Delta-G solvation = -61.614481 kcal Electronic energy + Delta-G solvation = -22032.406066 eV Core-core repulsion = 18579.389975 eV Total energy + Delta-G solvation = -3453.016092 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.098 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.13966 -40.43220 -39.20042 -37.08845 -36.02379 -34.36075 -32.06160 -31.43719 -31.00319 -29.53654 -27.39996 -26.34928 -24.20570 -23.59513 -22.32760 -21.28200 -20.27215 -19.14303 -18.17445 -17.82222 -17.32876 -17.11541 -17.04203 -16.64214 -16.10413 -15.76461 -15.32387 -15.12164 -14.90684 -14.68992 -14.51323 -14.44087 -13.88036 -13.75801 -13.49460 -13.15780 -13.03984 -12.93109 -12.80836 -12.60204 -12.49014 -12.30633 -12.13844 -11.77819 -11.18871 -11.16330 -10.72551 -10.63790 -10.57972 -10.02078 -9.43218 -8.43608 -8.21856 -6.39239 -0.12988 0.21929 0.51748 0.54767 1.27134 1.44905 1.45823 1.50662 1.56679 2.07452 2.37808 2.64973 2.69990 3.09021 3.42752 3.88843 4.06009 4.14958 4.29015 4.29655 4.38611 4.42794 4.67644 4.70130 4.86000 4.86439 4.99313 5.12817 5.15681 5.21329 5.27553 5.36179 5.41688 5.57662 5.73234 5.84279 5.95846 6.01426 6.49075 6.62244 6.73377 7.02358 7.32906 8.84367 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.023739 B = 0.002742 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.199405 B =10209.650576 C =10894.259327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.165 6.165 3 C -0.077 4.077 4 C -0.144 4.144 5 C -0.073 4.073 6 C -0.141 4.141 7 C 0.140 3.860 8 N -0.634 5.634 9 C 0.516 3.484 10 O -0.518 6.518 11 C 0.497 3.503 12 O -0.555 6.555 13 N -0.670 5.670 14 C 0.268 3.732 15 H 0.016 0.984 16 C -0.137 4.137 17 C -0.554 4.554 18 H 0.069 0.931 19 C 0.021 3.979 20 N -0.912 5.912 21 Si 0.972 3.028 22 H -0.276 1.276 23 H -0.280 1.280 24 H -0.264 1.264 25 C -0.128 4.128 26 H 0.096 0.904 27 H 0.124 0.876 28 H 0.099 0.901 29 H 0.154 0.846 30 H 0.170 0.830 31 H 0.155 0.845 32 H 0.432 0.568 33 H 0.410 0.590 34 H 0.021 0.979 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.268 0.732 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.060 -2.653 5.665 26.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.077 5.923 3 C -0.190 4.190 4 C -0.168 4.168 5 C -0.093 4.093 6 C -0.164 4.164 7 C 0.045 3.955 8 N -0.281 5.281 9 C 0.298 3.702 10 O -0.393 6.393 11 C 0.277 3.723 12 O -0.434 6.434 13 N -0.319 5.319 14 C 0.166 3.834 15 H 0.034 0.966 16 C -0.195 4.195 17 C -0.592 4.592 18 H 0.088 0.912 19 C -0.180 4.180 20 N -0.550 5.550 21 Si 0.796 3.204 22 H -0.202 1.202 23 H -0.206 1.206 24 H -0.189 1.189 25 C -0.154 4.154 26 H 0.115 0.885 27 H 0.142 0.858 28 H 0.118 0.882 29 H 0.172 0.828 30 H 0.188 0.812 31 H 0.173 0.827 32 H 0.272 0.728 33 H 0.245 0.755 34 H 0.040 0.960 35 H 0.058 0.942 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -25.141 -3.648 5.660 26.027 hybrid contribution 0.359 0.807 -0.611 1.074 sum -24.782 -2.841 5.050 25.450 Atomic orbital electron populations 1.23792 0.90651 1.08617 1.06909 1.85913 1.10819 1.03164 1.92431 1.21685 0.95803 0.97469 1.04068 1.21553 0.98914 0.93112 1.03232 1.21294 0.96003 0.95771 0.96236 1.21323 0.91935 0.99778 1.03340 1.17847 0.82984 0.93167 1.01546 1.43045 1.05568 1.29830 1.49685 1.20299 0.86582 0.84358 0.78940 1.90751 1.80869 1.22465 1.45261 1.20062 0.86294 0.85040 0.80917 1.90710 1.81665 1.23907 1.47163 1.46284 1.10364 1.24976 1.50322 1.18634 0.75468 0.94377 0.94899 0.96573 1.21933 1.02504 0.99289 0.95815 1.21489 0.98023 1.31029 1.08672 0.91250 1.25723 0.97432 0.94954 0.99922 1.70013 1.11069 1.35501 1.38397 0.85346 0.77442 0.78933 0.78655 1.20173 1.20552 1.18867 1.20793 0.95765 0.95143 1.03651 0.88512 0.85781 0.88188 0.82813 0.81221 0.82693 0.72759 0.75465 0.96010 0.94176 0.90690 0.92253 0.86446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 9.15 113.37 1.04 -0.21 16 2 S -0.17 -3.43 22.56 -56.49 -1.27 -4.71 16 3 C -0.08 -1.77 6.11 22.61 0.14 -1.63 16 4 C -0.14 -2.30 9.36 22.44 0.21 -2.09 16 5 C -0.07 -1.01 10.03 22.23 0.22 -0.79 16 6 C -0.14 -2.54 9.96 22.44 0.22 -2.31 16 7 C 0.14 3.56 6.29 38.19 0.24 3.80 16 8 N -0.63 -17.57 5.32 -304.89 -1.62 -19.19 16 9 C 0.52 18.00 7.73 87.24 0.67 18.67 16 10 O -0.52 -19.73 13.91 -3.34 -0.05 -19.77 16 11 C 0.50 20.32 7.85 87.24 0.68 21.00 16 12 O -0.55 -24.77 16.14 -3.28 -0.05 -24.82 16 13 N -0.67 -29.46 5.06 -447.53 -2.27 -31.73 16 14 C 0.27 13.84 2.56 44.24 0.11 13.96 16 15 H 0.02 0.96 7.58 -2.39 -0.02 0.94 16 16 C -0.14 -6.80 9.26 71.98 0.67 -6.14 16 17 C -0.55 -29.61 8.73 25.60 0.22 -29.39 16 18 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 19 C 0.02 1.10 5.30 84.65 0.45 1.55 16 20 N -0.91 -51.18 11.32 21.45 0.24 -50.94 16 21 Si 0.97 42.11 29.54 68.60 2.03 44.14 16 22 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 23 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 24 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 25 C -0.13 -3.62 8.44 22.54 0.19 -3.43 16 26 H 0.10 0.72 7.75 -2.39 -0.02 0.70 16 27 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.10 0.67 7.74 -2.39 -0.02 0.65 16 29 H 0.15 1.48 5.87 -2.92 -0.02 1.46 16 30 H 0.17 1.05 8.06 -2.92 -0.02 1.03 16 31 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 32 H 0.43 10.30 8.30 -92.71 -0.77 9.53 16 33 H 0.41 16.81 8.01 -92.71 -0.74 16.07 16 34 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.04 1.86 8.14 -2.39 -0.02 1.85 16 36 H 0.07 4.04 6.07 -2.39 -0.01 4.03 16 37 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 38 H 0.12 3.96 6.22 -2.91 -0.02 3.94 16 Total: -1.00 -67.42 340.07 1.69 -65.73 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: -0.39 Total: 28.31 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 5.07 Total: 12.98 kcal Atomic # 7 Polarization: -98.21 SS G_CDS: -3.64 Total: -101.86 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -0.10 Total: -44.60 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -1.27 Total: -4.71 kcal Total: -67.42 1.69 -65.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123049937.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.115 kcal (2) G-P(sol) polarization free energy of solvation -67.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds