Wall clock time and date at job start Fri Apr 10 2020 22:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76196 * 103.00331 * 2 1 4 4 C 1.39061 * 120.03987 * 0.02562 * 3 2 1 5 5 C 1.38115 * 120.07026 * 179.97438 * 4 3 2 6 6 C 1.38186 * 120.15558 * 359.71278 * 5 4 3 7 7 C 1.38975 * 120.08407 * 0.56182 * 6 5 4 8 8 N 1.39729 * 120.03921 * 179.71812 * 7 6 5 9 9 C 1.34779 * 120.00273 * 214.83363 * 8 7 6 10 10 O 1.21384 * 119.99490 * 355.38657 * 9 8 7 11 11 C 1.49347 * 120.00201 * 175.38387 * 9 8 7 12 12 O 1.21362 * 120.00210 * 0.02562 * 11 9 8 13 13 N 1.34779 * 120.00201 * 180.02562 * 11 9 8 14 14 C 1.46499 * 120.00309 * 180.02562 * 13 11 9 15 15 H 1.09000 * 109.47197 * 34.99683 * 14 13 11 16 16 C 1.53004 * 109.46721 * 274.99804 * 14 13 11 17 17 C 1.50693 * 109.47387 * 155.00200 * 14 13 11 18 18 H 1.08003 * 120.00182 * 359.97438 * 17 14 13 19 19 C 1.37875 * 120.00011 * 179.97438 * 17 14 13 20 20 N 1.31516 * 119.99752 * 179.72171 * 19 17 14 21 21 Si 1.86799 * 120.00187 * 359.97438 * 19 17 14 22 22 H 1.48493 * 109.47194 * 269.72680 * 21 19 17 23 23 H 1.48503 * 109.46753 * 29.72514 * 21 19 17 24 24 H 1.48502 * 109.47086 * 149.72263 * 21 19 17 25 25 C 1.38796 * 119.92795 * 359.44552 * 7 6 5 26 26 H 1.09006 * 109.46796 * 59.99804 * 1 2 3 27 27 H 1.08999 * 109.47584 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47249 * 300.00047 * 1 2 3 29 29 H 1.07997 * 119.96718 * 359.94701 * 4 3 2 30 30 H 1.08003 * 119.92444 * 180.02562 * 5 4 3 31 31 H 1.08000 * 119.96055 * 180.30209 * 6 5 4 32 32 H 0.97001 * 120.00044 * 34.82858 * 8 7 6 33 33 H 0.97000 * 119.99498 * 0.02562 * 13 11 9 34 34 H 1.09005 * 109.47010 * 60.00356 * 16 14 13 35 35 H 1.09002 * 109.47013 * 179.97438 * 16 14 13 36 36 H 1.09000 * 109.47186 * 299.99885 * 16 14 13 37 37 H 0.97003 * 119.99627 * 180.27525 * 20 19 17 38 38 H 1.08002 * 120.07765 * 180.25703 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1941 2.6659 0.0005 5 6 1.5042 4.0118 0.0011 6 6 2.8244 4.4201 0.0071 7 6 3.8452 3.4770 0.0008 8 7 5.1798 3.8909 0.0009 9 6 6.1063 3.1789 -0.6708 10 8 5.7980 2.1338 -1.2057 11 6 7.5120 3.6758 -0.7570 12 8 7.8203 4.7205 -0.2218 13 7 8.4384 2.9640 -1.4291 14 6 9.8174 3.4511 -1.5132 15 1 10.0824 3.9542 -0.5833 16 6 9.9406 4.4349 -2.6785 17 6 10.7484 2.2875 -1.7377 18 1 10.3525 1.2853 -1.8101 19 6 12.1056 2.5024 -1.8507 20 7 12.9186 1.4863 -2.0412 21 14 12.7904 4.2359 -1.7263 22 1 12.8382 4.8475 -3.0786 23 1 11.9164 5.0512 -0.8449 24 1 14.1608 4.1870 -1.1562 25 6 3.5376 2.1236 0.0001 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 0.1613 2.3504 0.0001 30 1 0.7130 4.7470 0.0019 31 1 3.0632 5.4733 0.0124 32 1 5.4395 4.6908 0.4843 33 1 8.1919 2.1291 -1.8571 34 1 9.2672 5.2766 -2.5160 35 1 10.9665 4.7977 -2.7408 36 1 9.6756 3.9317 -3.6084 37 1 13.8738 1.6371 -2.1168 38 1 4.3290 1.3887 -0.0006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123050166.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:02:34 Heat of formation + Delta-G solvation = -32.629575 kcal Electronic energy + Delta-G solvation = -22096.177616 eV Core-core repulsion = 18644.418404 eV Total energy + Delta-G solvation = -3451.759212 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.098 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.93265 -39.26130 -38.01100 -35.60030 -34.77455 -32.45477 -31.27487 -30.55375 -30.07650 -28.92848 -25.43675 -24.99250 -23.34826 -22.48562 -20.85681 -19.83120 -18.99992 -18.02870 -16.85050 -16.58962 -16.34244 -15.94103 -15.54917 -15.36668 -15.00695 -14.53609 -14.32692 -14.16827 -13.93305 -13.59960 -13.31298 -13.11937 -12.93397 -12.88674 -12.28866 -12.20084 -11.96188 -11.85461 -11.43632 -11.27407 -10.87884 -10.81820 -10.42082 -10.26753 -9.85261 -9.74968 -9.33953 -9.23457 -8.85093 -8.50636 -8.40208 -7.63938 -6.25599 -4.29792 0.82437 1.07216 1.24250 1.71636 2.14856 2.50820 3.19081 3.31441 3.33619 3.34498 3.57782 3.91463 4.25934 4.59748 4.69634 4.70147 4.78081 4.85327 4.90397 5.07930 5.20306 5.24294 5.29822 5.51840 5.94716 6.03184 6.07740 6.13182 6.19489 6.24002 6.42261 6.66794 6.69244 6.87192 7.06283 7.09232 7.36267 7.67210 7.99247 8.35413 8.46824 8.74577 9.32577 10.86367 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.027162 B = 0.002822 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.609711 B = 9918.952310 C =10762.331932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 S -0.106 6.106 3 C -0.068 4.068 4 C -0.151 4.151 5 C -0.082 4.082 6 C -0.147 4.147 7 C 0.166 3.834 8 N -0.651 5.651 9 C 0.508 3.492 10 O -0.497 6.497 11 C 0.498 3.502 12 O -0.536 6.536 13 N -0.660 5.660 14 C 0.235 3.765 15 H 0.054 0.946 16 C -0.163 4.163 17 C -0.540 4.540 18 H 0.084 0.916 19 C 0.080 3.920 20 N -0.888 5.888 21 Si 0.885 3.115 22 H -0.275 1.275 23 H -0.261 1.261 24 H -0.293 1.293 25 C -0.102 4.102 26 H 0.084 0.916 27 H 0.108 0.892 28 H 0.083 0.917 29 H 0.124 0.876 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.425 0.575 33 H 0.409 0.591 34 H 0.037 0.963 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.269 0.731 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.298 3.451 4.546 25.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.136 5.864 3 C -0.181 4.181 4 C -0.176 4.176 5 C -0.102 4.102 6 C -0.170 4.170 7 C 0.070 3.930 8 N -0.298 5.298 9 C 0.291 3.709 10 O -0.370 6.370 11 C 0.277 3.723 12 O -0.415 6.415 13 N -0.309 5.309 14 C 0.132 3.868 15 H 0.072 0.928 16 C -0.221 4.221 17 C -0.578 4.578 18 H 0.102 0.898 19 C -0.124 4.124 20 N -0.524 5.524 21 Si 0.715 3.285 22 H -0.202 1.202 23 H -0.186 1.186 24 H -0.220 1.220 25 C -0.127 4.127 26 H 0.103 0.897 27 H 0.126 0.874 28 H 0.102 0.898 29 H 0.142 0.858 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.263 0.737 33 H 0.245 0.755 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -24.335 2.282 4.469 24.847 hybrid contribution -0.333 1.986 -0.043 2.014 sum -24.668 4.269 4.427 25.423 Atomic orbital electron populations 1.23694 0.95255 1.07093 1.05590 1.85765 1.05689 1.02656 1.92282 1.21590 0.96037 0.96805 1.03678 1.21126 0.98103 0.93167 1.05178 1.20799 0.95726 0.95256 0.98402 1.20976 0.92031 0.99108 1.04849 1.17607 0.83204 0.92759 0.99478 1.43203 1.05430 1.30304 1.50878 1.20848 0.87321 0.84328 0.78392 1.90766 1.80823 1.21537 1.43881 1.19658 0.85457 0.85561 0.81637 1.90729 1.80747 1.23063 1.46913 1.46142 1.10258 1.24668 1.49820 1.19322 0.76980 0.94791 0.95684 0.92784 1.22473 1.00158 0.98847 1.00646 1.20996 0.91037 0.93493 1.52237 0.89830 1.24819 0.96541 0.97232 0.93808 1.69864 1.04000 1.30628 1.47948 0.86882 0.78118 0.84843 0.78700 1.20175 1.18619 1.21991 1.20910 0.95307 0.95132 1.01385 0.89730 0.87387 0.89766 0.85804 0.85201 0.85087 0.73714 0.75500 0.94362 0.93009 0.92411 0.92126 0.83458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.15 101.05 0.92 0.03 16 2 S -0.11 -1.12 22.56 -107.50 -2.43 -3.54 16 3 C -0.07 -0.79 6.11 -39.06 -0.24 -1.03 16 4 C -0.15 -1.41 9.36 -39.32 -0.37 -1.78 16 5 C -0.08 -0.70 10.03 -39.65 -0.40 -1.09 16 6 C -0.15 -1.44 9.96 -39.33 -0.39 -1.83 16 7 C 0.17 2.07 6.29 -83.78 -0.53 1.54 16 8 N -0.65 -8.53 5.32 -10.32 -0.05 -8.58 16 9 C 0.51 8.24 7.73 -11.63 -0.09 8.16 16 10 O -0.50 -8.85 13.91 5.47 0.08 -8.78 16 11 C 0.50 9.31 7.85 -11.63 -0.09 9.22 16 12 O -0.54 -10.83 16.14 5.49 0.09 -10.74 16 13 N -0.66 -13.40 5.06 -55.40 -0.28 -13.68 16 14 C 0.23 5.49 2.15 -69.08 -0.15 5.34 16 15 H 0.05 1.35 6.64 -51.93 -0.34 1.01 16 16 C -0.16 -3.54 8.96 37.16 0.33 -3.20 16 17 C -0.54 -14.48 9.31 -34.44 -0.32 -14.80 16 18 H 0.08 2.39 7.98 -52.48 -0.42 1.97 16 19 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 20 N -0.89 -26.08 13.96 55.43 0.77 -25.30 16 21 Si 0.89 21.18 24.37 -169.99 -4.14 17.03 16 22 H -0.28 -6.36 6.88 56.52 0.39 -5.97 16 23 H -0.26 -6.12 6.52 56.52 0.37 -5.75 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 C -0.10 -1.38 8.44 -39.16 -0.33 -1.71 16 26 H 0.08 0.45 7.75 -51.92 -0.40 0.05 16 27 H 0.11 0.50 8.14 -51.92 -0.42 0.08 16 28 H 0.08 0.43 7.75 -51.93 -0.40 0.02 16 29 H 0.12 0.85 5.87 -52.49 -0.31 0.54 16 30 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 31 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.42 4.76 8.30 -40.82 -0.34 4.42 16 33 H 0.41 7.92 8.01 -40.82 -0.33 7.60 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.15 2.28 6.22 -52.49 -0.33 1.96 16 LS Contribution 333.24 15.07 5.02 5.02 Total: -1.00 -31.25 333.24 -7.02 -38.26 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -4.33 Total: 9.34 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -1.74 Total: 0.96 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.44 Total: -47.57 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: 0.16 Total: -19.52 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.14 Total: 17.03 kcal Atomic # 16 Polarization: -1.12 SS G_CDS: -2.43 Total: -3.54 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.25 -7.02 -38.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123050166.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.635 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds