Wall clock time and date at job start Fri Apr 10 2020 22:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76196 * 103.00331 * 2 1 4 4 C 1.39061 * 120.03987 * 0.02562 * 3 2 1 5 5 C 1.38115 * 120.07026 * 179.97438 * 4 3 2 6 6 C 1.38186 * 120.15558 * 359.71278 * 5 4 3 7 7 C 1.38975 * 120.08407 * 0.56182 * 6 5 4 8 8 N 1.39729 * 120.03921 * 179.71812 * 7 6 5 9 9 C 1.34779 * 120.00273 * 214.83363 * 8 7 6 10 10 O 1.21384 * 119.99490 * 355.38657 * 9 8 7 11 11 C 1.49347 * 120.00201 * 175.38387 * 9 8 7 12 12 O 1.21362 * 120.00210 * 0.02562 * 11 9 8 13 13 N 1.34779 * 120.00201 * 180.02562 * 11 9 8 14 14 C 1.46499 * 120.00309 * 180.02562 * 13 11 9 15 15 H 1.09000 * 109.47197 * 34.99683 * 14 13 11 16 16 C 1.53004 * 109.46721 * 274.99804 * 14 13 11 17 17 C 1.50693 * 109.47387 * 155.00200 * 14 13 11 18 18 H 1.08003 * 120.00182 * 359.97438 * 17 14 13 19 19 C 1.37875 * 120.00011 * 179.97438 * 17 14 13 20 20 N 1.31516 * 119.99752 * 179.72171 * 19 17 14 21 21 Si 1.86799 * 120.00187 * 359.97438 * 19 17 14 22 22 H 1.48493 * 109.47194 * 269.72680 * 21 19 17 23 23 H 1.48503 * 109.46753 * 29.72514 * 21 19 17 24 24 H 1.48502 * 109.47086 * 149.72263 * 21 19 17 25 25 C 1.38796 * 119.92795 * 359.44552 * 7 6 5 26 26 H 1.09006 * 109.46796 * 59.99804 * 1 2 3 27 27 H 1.08999 * 109.47584 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47249 * 300.00047 * 1 2 3 29 29 H 1.07997 * 119.96718 * 359.94701 * 4 3 2 30 30 H 1.08003 * 119.92444 * 180.02562 * 5 4 3 31 31 H 1.08000 * 119.96055 * 180.30209 * 6 5 4 32 32 H 0.97001 * 120.00044 * 34.82858 * 8 7 6 33 33 H 0.97000 * 119.99498 * 0.02562 * 13 11 9 34 34 H 1.09005 * 109.47010 * 60.00356 * 16 14 13 35 35 H 1.09002 * 109.47013 * 179.97438 * 16 14 13 36 36 H 1.09000 * 109.47186 * 299.99885 * 16 14 13 37 37 H 0.97003 * 119.99627 * 180.27525 * 20 19 17 38 38 H 1.08002 * 120.07765 * 180.25703 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1941 2.6659 0.0005 5 6 1.5042 4.0118 0.0011 6 6 2.8244 4.4201 0.0071 7 6 3.8452 3.4770 0.0008 8 7 5.1798 3.8909 0.0009 9 6 6.1063 3.1789 -0.6708 10 8 5.7980 2.1338 -1.2057 11 6 7.5120 3.6758 -0.7570 12 8 7.8203 4.7205 -0.2218 13 7 8.4384 2.9640 -1.4291 14 6 9.8174 3.4511 -1.5132 15 1 10.0824 3.9542 -0.5833 16 6 9.9406 4.4349 -2.6785 17 6 10.7484 2.2875 -1.7377 18 1 10.3525 1.2853 -1.8101 19 6 12.1056 2.5024 -1.8507 20 7 12.9186 1.4863 -2.0412 21 14 12.7904 4.2359 -1.7263 22 1 12.8382 4.8475 -3.0786 23 1 11.9164 5.0512 -0.8449 24 1 14.1608 4.1870 -1.1562 25 6 3.5376 2.1236 0.0001 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 0.1613 2.3504 0.0001 30 1 0.7130 4.7470 0.0019 31 1 3.0632 5.4733 0.0124 32 1 5.4395 4.6908 0.4843 33 1 8.1919 2.1291 -1.8571 34 1 9.2672 5.2766 -2.5160 35 1 10.9665 4.7977 -2.7408 36 1 9.6756 3.9317 -3.6084 37 1 13.8738 1.6371 -2.1168 38 1 4.3290 1.3887 -0.0006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123050166.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:02:33 Heat of formation + Delta-G solvation = -55.107046 kcal Electronic energy + Delta-G solvation = -22097.152312 eV Core-core repulsion = 18644.418404 eV Total energy + Delta-G solvation = -3452.733908 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.098 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.17266 -40.49652 -39.23527 -37.20775 -36.04236 -34.44015 -32.07704 -31.93767 -31.30047 -29.55491 -27.30310 -26.45281 -24.21865 -23.63070 -22.31744 -21.35616 -20.31704 -19.16594 -18.48491 -17.83570 -17.42598 -17.28452 -17.05736 -16.67597 -16.12506 -15.88043 -15.30382 -15.16113 -14.97994 -14.84883 -14.68949 -14.47313 -14.15980 -13.88390 -13.75273 -13.49591 -13.29507 -13.12831 -12.80099 -12.60691 -12.51494 -12.16522 -11.79087 -11.58448 -11.35546 -11.16612 -10.91108 -10.72564 -10.59540 -10.15754 -9.43601 -8.44433 -8.39559 -6.48443 -0.14444 0.21729 0.50112 0.53769 1.22894 1.29783 1.37251 1.46715 1.50518 2.02882 2.25671 2.59694 2.65802 2.95856 3.34780 3.88725 4.06011 4.15022 4.28543 4.29131 4.37627 4.38383 4.42676 4.50024 4.61096 4.70060 4.85408 4.90130 5.12230 5.15029 5.16814 5.23695 5.31301 5.36676 5.43210 5.79292 5.87144 6.07651 6.44324 6.53677 6.66981 6.89530 7.19004 8.75953 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.027162 B = 0.002822 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.609711 B = 9918.952310 C =10762.331932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.169 6.169 3 C -0.077 4.077 4 C -0.144 4.144 5 C -0.073 4.073 6 C -0.139 4.139 7 C 0.140 3.860 8 N -0.632 5.632 9 C 0.515 3.485 10 O -0.519 6.519 11 C 0.503 3.497 12 O -0.548 6.548 13 N -0.667 5.667 14 C 0.240 3.760 15 H 0.041 0.959 16 C -0.158 4.158 17 C -0.543 4.543 18 H 0.051 0.949 19 C 0.028 3.972 20 N -0.934 5.934 21 Si 0.944 3.056 22 H -0.257 1.257 23 H -0.252 1.252 24 H -0.292 1.292 25 C -0.129 4.129 26 H 0.097 0.903 27 H 0.123 0.877 28 H 0.099 0.901 29 H 0.154 0.846 30 H 0.171 0.829 31 H 0.158 0.842 32 H 0.434 0.566 33 H 0.412 0.588 34 H 0.056 0.944 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.272 0.728 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.403 6.134 4.747 29.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.073 5.927 3 C -0.190 4.190 4 C -0.168 4.168 5 C -0.093 4.093 6 C -0.162 4.162 7 C 0.045 3.955 8 N -0.280 5.280 9 C 0.297 3.703 10 O -0.394 6.394 11 C 0.283 3.717 12 O -0.427 6.427 13 N -0.317 5.317 14 C 0.137 3.863 15 H 0.059 0.941 16 C -0.216 4.216 17 C -0.581 4.581 18 H 0.069 0.931 19 C -0.172 4.172 20 N -0.572 5.572 21 Si 0.770 3.230 22 H -0.183 1.183 23 H -0.176 1.176 24 H -0.219 1.219 25 C -0.155 4.155 26 H 0.115 0.885 27 H 0.142 0.858 28 H 0.118 0.882 29 H 0.171 0.829 30 H 0.188 0.812 31 H 0.176 0.824 32 H 0.274 0.726 33 H 0.248 0.752 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -27.492 4.987 4.689 28.331 hybrid contribution 0.435 1.068 -0.044 1.154 sum -27.057 6.055 4.644 28.112 Atomic orbital electron populations 1.23790 0.90592 1.08601 1.06921 1.85973 1.10889 1.03380 1.92416 1.21679 0.95857 0.97352 1.04130 1.21554 0.98869 0.93170 1.03219 1.21302 0.96111 0.95688 0.96216 1.21321 0.91814 0.99818 1.03206 1.17820 0.83048 0.93040 1.01575 1.43017 1.05496 1.29821 1.49656 1.20263 0.86600 0.84361 0.79093 1.90778 1.80845 1.22443 1.45307 1.19976 0.86261 0.84998 0.80472 1.90710 1.81329 1.23549 1.47104 1.45992 1.09673 1.25199 1.50806 1.19033 0.77845 0.93657 0.95796 0.94149 1.22375 1.00430 0.98875 0.99925 1.21205 0.91971 0.93458 1.51485 0.93074 1.25639 0.96877 1.01227 0.93455 1.69991 1.04500 1.33026 1.49674 0.85928 0.77305 0.80093 0.79676 1.18265 1.17631 1.21930 1.20798 0.95716 0.95273 1.03691 0.88462 0.85842 0.88175 0.82885 0.81173 0.82445 0.72613 0.75221 0.92550 0.93290 0.91771 0.91871 0.86627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 9.15 113.37 1.04 -0.21 16 2 S -0.17 -3.54 22.56 -56.49 -1.27 -4.82 16 3 C -0.08 -1.74 6.11 22.60 0.14 -1.60 16 4 C -0.14 -2.22 9.36 22.44 0.21 -2.01 16 5 C -0.07 -0.94 10.03 22.23 0.22 -0.71 16 6 C -0.14 -2.28 9.96 22.43 0.22 -2.06 16 7 C 0.14 3.38 6.29 38.19 0.24 3.62 16 8 N -0.63 -16.22 5.32 -304.90 -1.62 -17.85 16 9 C 0.51 16.92 7.73 87.24 0.67 17.59 16 10 O -0.52 -19.24 13.91 -3.35 -0.05 -19.29 16 11 C 0.50 18.84 7.85 87.24 0.68 19.53 16 12 O -0.55 -21.72 16.14 -3.28 -0.05 -21.77 16 13 N -0.67 -27.57 5.06 -447.54 -2.27 -29.83 16 14 C 0.24 11.26 2.15 44.24 0.10 11.35 16 15 H 0.04 2.02 6.64 -2.39 -0.02 2.00 16 16 C -0.16 -6.63 8.96 71.98 0.64 -5.98 16 17 C -0.54 -29.94 9.31 25.60 0.24 -29.71 16 18 H 0.05 3.07 7.98 -2.91 -0.02 3.05 16 19 C 0.03 1.58 5.45 84.65 0.46 2.04 16 20 N -0.93 -56.25 13.96 21.45 0.30 -55.95 16 21 Si 0.94 43.36 24.37 68.60 1.67 45.03 16 22 H -0.26 -11.03 6.88 99.48 0.68 -10.35 16 23 H -0.25 -11.13 6.52 99.48 0.65 -10.48 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 25 C -0.13 -3.59 8.44 22.54 0.19 -3.40 16 26 H 0.10 0.71 7.75 -2.39 -0.02 0.70 16 27 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.10 0.67 7.75 -2.39 -0.02 0.65 16 29 H 0.15 1.41 5.87 -2.91 -0.02 1.39 16 30 H 0.17 0.87 8.06 -2.91 -0.02 0.84 16 31 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 32 H 0.43 9.19 8.30 -92.71 -0.77 8.42 16 33 H 0.41 16.60 8.01 -92.71 -0.74 15.85 16 34 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 35 H 0.05 2.07 3.27 -2.39 -0.01 2.06 16 36 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 38 H 0.12 3.89 6.22 -2.91 -0.02 3.88 16 Total: -1.00 -70.24 333.24 1.30 -68.94 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: -0.47 Total: 27.09 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 5.06 Total: 8.44 kcal Atomic # 7 Polarization: -100.04 SS G_CDS: -3.59 Total: -103.63 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -0.10 Total: -41.06 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.67 Total: 45.03 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.27 Total: -4.82 kcal Total: -70.24 1.30 -68.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123050166.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.830 kcal (2) G-P(sol) polarization free energy of solvation -70.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds