Wall clock time and date at job start Fri Apr 10 2020 22:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21299 * 120.00162 * 2 1 4 4 N 1.34778 * 120.00062 * 180.02562 * 2 1 3 5 5 C 1.40149 * 120.00110 * 184.74558 * 4 2 1 6 6 C 1.38864 * 119.99061 * 213.24999 * 5 4 2 7 7 C 1.38039 * 120.00788 * 180.02562 * 6 5 4 8 8 C 1.38952 * 119.99371 * 359.97438 * 7 6 5 9 9 S 1.76196 * 120.01210 * 179.97438 * 8 7 6 10 10 C 1.81407 * 102.99878 * 85.75599 * 9 8 7 11 11 H 1.08998 * 109.46832 * 305.76579 * 10 9 8 12 12 C 1.53003 * 109.47116 * 65.76966 * 10 9 8 13 13 C 1.50699 * 109.46849 * 185.76894 * 10 9 8 14 14 O 1.21295 * 120.00279 * 339.99864 * 13 10 9 15 15 N 1.34776 * 120.00126 * 159.99851 * 13 10 9 16 16 C 1.37097 * 120.00431 * 179.97438 * 15 13 10 17 17 H 1.07999 * 119.99466 * 0.02562 * 16 15 13 18 18 C 1.38947 * 120.00249 * 179.97438 * 16 15 13 19 19 N 1.31411 * 119.99993 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99974 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46952 * 60.00631 * 20 18 16 22 22 H 1.48506 * 109.46701 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47268 * 300.00415 * 20 18 16 24 24 C 1.38949 * 119.97540 * 0.24605 * 8 7 6 25 25 C 1.38044 * 119.99435 * 359.52377 * 24 8 7 26 26 H 1.08996 * 109.46663 * 239.99807 * 1 2 3 27 27 H 1.08993 * 109.46987 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46822 * 119.99720 * 1 2 3 29 29 H 0.97002 * 120.00000 * 4.74589 * 4 2 1 30 30 H 1.07997 * 119.99578 * 0.02562 * 6 5 4 31 31 H 1.08002 * 120.00045 * 179.97438 * 7 6 5 32 32 H 1.08999 * 109.46871 * 54.52249 * 12 10 9 33 33 H 1.09000 * 109.46717 * 174.51890 * 12 10 9 34 34 H 1.09001 * 109.47054 * 294.52206 * 12 10 9 35 35 H 0.97000 * 119.99740 * 0.02562 * 15 13 10 36 36 H 0.96999 * 120.00201 * 179.97438 * 19 18 16 37 37 H 1.08000 * 120.00111 * 179.72565 * 24 8 7 38 38 H 1.08000 * 119.99675 * 180.20714 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0505 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5788 -1.1693 0.0999 6 6 4.3199 -2.1478 -0.5496 7 6 5.6967 -2.1505 -0.4505 8 6 6.3412 -1.1738 0.2988 9 16 8.0985 -1.1773 0.4262 10 6 8.6164 -0.2577 -1.0494 11 1 8.1748 -0.7140 -1.9353 12 6 8.1477 1.1943 -0.9360 13 6 10.1188 -0.2933 -1.1618 14 8 10.7941 -0.5457 -0.1864 15 7 10.7120 -0.0448 -2.3461 16 6 12.0788 -0.0767 -2.4484 17 1 12.6801 -0.3013 -1.5798 18 6 12.6903 0.1791 -3.6695 19 7 11.9586 0.4519 -4.7264 20 14 14.5526 0.1349 -3.8089 21 1 15.0449 -1.2159 -3.4371 22 1 14.9517 0.4405 -5.2063 23 1 15.1416 1.1456 -2.8940 24 6 5.5989 -0.1977 0.9522 25 6 4.2224 -0.1928 0.8488 26 1 -0.3632 -0.5139 0.8900 27 1 -0.3633 1.0276 0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 1.6984 -2.0058 -0.0704 30 1 3.8190 -2.9066 -1.1323 31 1 6.2730 -2.9118 -0.9554 32 1 8.5097 1.6209 -0.0006 33 1 8.5412 1.7695 -1.7741 34 1 7.0583 1.2268 -0.9526 35 1 10.1719 0.1574 -3.1261 36 1 12.3856 0.6308 -5.5788 37 1 6.0991 0.5590 1.5384 38 1 3.6456 0.5678 1.3539 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126723830.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:02:42 Heat of formation + Delta-G solvation = -48.693245 kcal Electronic energy + Delta-G solvation = -21771.667497 eV Core-core repulsion = 18319.211712 eV Total energy + Delta-G solvation = -3452.455785 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.098 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.74943 -38.54911 -38.26722 -35.08669 -34.00461 -32.55074 -31.20342 -31.12177 -30.94646 -28.76738 -25.37919 -23.54600 -23.30262 -22.75171 -20.78089 -19.41830 -18.21118 -18.02087 -17.28911 -17.17948 -16.04265 -15.86187 -15.02251 -14.76976 -14.67528 -14.54345 -14.00576 -13.96088 -13.64299 -13.54727 -13.28067 -13.17430 -12.82690 -12.77987 -12.54012 -11.84194 -11.64245 -11.54143 -11.40557 -11.18821 -11.03758 -10.73654 -10.45002 -10.32221 -10.22671 -9.59049 -9.53711 -9.05545 -8.48123 -8.23316 -8.01802 -7.30235 -6.44904 -3.86077 0.80879 1.29412 1.95906 2.23150 2.67450 2.97341 3.19616 3.25325 3.30172 3.68023 3.84840 4.15696 4.25836 4.69462 4.77296 4.83915 4.84633 4.85578 5.16894 5.22115 5.30283 5.33745 5.40674 5.51052 5.55080 5.80902 5.89940 5.93038 6.07847 6.09058 6.25487 6.27256 6.36098 6.46827 6.78306 6.97214 7.52443 7.69177 7.99415 8.54216 9.12404 9.47183 9.97594 10.72401 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.029699 B = 0.002633 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.558188 B =10632.584850 C =10960.263275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.507 3.493 3 O -0.521 6.521 4 N -0.676 5.676 5 C 0.159 3.841 6 C -0.155 4.155 7 C -0.054 4.054 8 C -0.139 4.139 9 S -0.085 6.085 10 C -0.088 4.088 11 H 0.093 0.907 12 C -0.137 4.137 13 C 0.459 3.541 14 O -0.578 6.578 15 N -0.552 5.552 16 C -0.301 4.301 17 H 0.105 0.895 18 C 0.024 3.976 19 N -0.899 5.899 20 Si 0.933 3.067 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.273 1.273 24 C -0.050 4.050 25 C -0.131 4.131 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.412 0.588 30 H 0.128 0.872 31 H 0.136 0.864 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.393 0.607 36 H 0.273 0.727 37 H 0.135 0.865 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.152 -4.104 6.291 25.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.296 3.704 3 O -0.396 6.396 4 N -0.322 5.322 5 C 0.065 3.935 6 C -0.177 4.177 7 C -0.075 4.075 8 C -0.251 4.251 9 S 0.148 5.852 10 C -0.219 4.219 11 H 0.111 0.889 12 C -0.197 4.197 13 C 0.243 3.757 14 O -0.462 6.462 15 N -0.187 5.187 16 C -0.430 4.430 17 H 0.122 0.878 18 C -0.178 4.178 19 N -0.540 5.540 20 Si 0.759 3.241 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 C -0.071 4.071 25 C -0.153 4.153 26 H 0.110 0.890 27 H 0.115 0.885 28 H 0.109 0.891 29 H 0.247 0.753 30 H 0.146 0.854 31 H 0.153 0.847 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.227 0.773 36 H 0.083 0.917 37 H 0.153 0.847 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -22.565 -3.901 7.536 24.108 hybrid contribution -0.639 0.172 -1.817 1.934 sum -23.205 -3.728 5.719 24.188 Atomic orbital electron populations 1.21931 0.90605 1.06107 1.04578 1.21058 0.90952 0.83162 0.75245 1.90785 1.70557 1.31175 1.47054 1.43720 1.05289 1.09966 1.73244 1.17873 0.82398 0.96986 0.96215 1.20891 0.94040 1.00817 1.01968 1.21492 0.93448 0.96958 0.95621 1.22138 0.99761 0.99327 1.03899 1.86062 0.93299 1.72533 1.33267 1.23454 0.99549 0.99660 0.99256 0.88865 1.21980 1.00622 0.93461 1.03621 1.18946 0.86637 0.85241 0.84838 1.90554 1.64438 1.54218 1.37023 1.41766 1.07676 1.60638 1.08656 1.19693 0.81398 1.45164 0.96760 0.87759 1.25291 1.00747 0.96912 0.94845 1.69607 1.36417 1.47269 1.00707 0.85885 0.81939 0.79082 0.77146 1.19779 1.20932 1.19794 1.21547 0.92877 0.96318 0.96356 1.21143 0.94630 0.99765 0.99789 0.88981 0.88486 0.89058 0.75255 0.85426 0.84651 0.91052 0.91283 0.92420 0.77305 0.91690 0.84686 0.84637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.65 10.32 36.01 0.37 -0.28 16 2 C 0.51 4.35 7.69 -10.98 -0.08 4.26 16 3 O -0.52 -6.99 14.74 5.54 0.08 -6.91 16 4 N -0.68 -5.04 5.35 -9.81 -0.05 -5.10 16 5 C 0.16 1.72 6.29 -83.59 -0.53 1.20 16 6 C -0.16 -1.60 9.95 -39.42 -0.39 -2.00 16 7 C -0.05 -0.68 9.78 -39.39 -0.39 -1.06 16 8 C -0.14 -2.03 5.24 -39.05 -0.20 -2.23 16 9 S -0.08 -1.53 20.34 -107.50 -2.19 -3.72 16 10 C -0.09 -1.68 3.14 -27.88 -0.09 -1.77 16 11 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 12 C -0.14 -2.34 9.02 37.16 0.34 -2.00 16 13 C 0.46 11.23 6.96 -10.99 -0.08 11.16 16 14 O -0.58 -16.16 15.62 5.54 0.09 -16.08 16 15 N -0.55 -14.23 5.29 -10.96 -0.06 -14.29 16 16 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 17 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 18 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 19 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 20 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 C -0.05 -0.67 9.33 -39.39 -0.37 -1.04 16 25 C -0.13 -1.65 8.65 -39.42 -0.34 -1.99 16 26 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.10 0.41 8.12 -51.93 -0.42 -0.01 16 28 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.41 1.49 8.82 -40.82 -0.36 1.13 16 30 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.06 0.87 7.38 -51.93 -0.38 0.49 16 35 H 0.39 9.72 7.90 -40.82 -0.32 9.39 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.14 1.73 6.39 -52.49 -0.34 1.39 16 LS Contribution 345.78 15.07 5.21 5.21 Total: -1.00 -34.66 345.78 -7.93 -42.59 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -4.72 Total: 9.76 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -2.00 Total: -3.79 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.61 Total: -43.15 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: 0.17 Total: -22.98 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.19 Total: -3.72 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.66 -7.93 -42.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126723830.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.102 kcal (2) G-P(sol) polarization free energy of solvation -34.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds