Wall clock time and date at job start Fri Apr 10 2020 22:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21299 * 120.00162 * 2 1 4 4 N 1.34778 * 120.00062 * 180.02562 * 2 1 3 5 5 C 1.40149 * 120.00110 * 184.74558 * 4 2 1 6 6 C 1.38864 * 119.99061 * 213.24999 * 5 4 2 7 7 C 1.38039 * 120.00788 * 180.02562 * 6 5 4 8 8 C 1.38952 * 119.99371 * 359.97438 * 7 6 5 9 9 S 1.76196 * 120.01210 * 179.97438 * 8 7 6 10 10 C 1.81407 * 102.99878 * 85.75599 * 9 8 7 11 11 H 1.08998 * 109.46832 * 305.76579 * 10 9 8 12 12 C 1.53003 * 109.47116 * 65.76966 * 10 9 8 13 13 C 1.50699 * 109.46849 * 185.76894 * 10 9 8 14 14 O 1.21295 * 120.00279 * 339.99864 * 13 10 9 15 15 N 1.34776 * 120.00126 * 159.99851 * 13 10 9 16 16 C 1.37097 * 120.00431 * 179.97438 * 15 13 10 17 17 H 1.07999 * 119.99466 * 0.02562 * 16 15 13 18 18 C 1.38947 * 120.00249 * 179.97438 * 16 15 13 19 19 N 1.31411 * 119.99993 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99974 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46952 * 60.00631 * 20 18 16 22 22 H 1.48506 * 109.46701 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47268 * 300.00415 * 20 18 16 24 24 C 1.38949 * 119.97540 * 0.24605 * 8 7 6 25 25 C 1.38044 * 119.99435 * 359.52377 * 24 8 7 26 26 H 1.08996 * 109.46663 * 239.99807 * 1 2 3 27 27 H 1.08993 * 109.46987 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46822 * 119.99720 * 1 2 3 29 29 H 0.97002 * 120.00000 * 4.74589 * 4 2 1 30 30 H 1.07997 * 119.99578 * 0.02562 * 6 5 4 31 31 H 1.08002 * 120.00045 * 179.97438 * 7 6 5 32 32 H 1.08999 * 109.46871 * 54.52249 * 12 10 9 33 33 H 1.09000 * 109.46717 * 174.51890 * 12 10 9 34 34 H 1.09001 * 109.47054 * 294.52206 * 12 10 9 35 35 H 0.97000 * 119.99740 * 0.02562 * 15 13 10 36 36 H 0.96999 * 120.00201 * 179.97438 * 19 18 16 37 37 H 1.08000 * 120.00111 * 179.72565 * 24 8 7 38 38 H 1.08000 * 119.99675 * 180.20714 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0505 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5788 -1.1693 0.0999 6 6 4.3199 -2.1478 -0.5496 7 6 5.6967 -2.1505 -0.4505 8 6 6.3412 -1.1738 0.2988 9 16 8.0985 -1.1773 0.4262 10 6 8.6164 -0.2577 -1.0494 11 1 8.1748 -0.7140 -1.9353 12 6 8.1477 1.1943 -0.9360 13 6 10.1188 -0.2933 -1.1618 14 8 10.7941 -0.5457 -0.1864 15 7 10.7120 -0.0448 -2.3461 16 6 12.0788 -0.0767 -2.4484 17 1 12.6801 -0.3013 -1.5798 18 6 12.6903 0.1791 -3.6695 19 7 11.9586 0.4519 -4.7264 20 14 14.5526 0.1349 -3.8089 21 1 15.0449 -1.2159 -3.4371 22 1 14.9517 0.4405 -5.2063 23 1 15.1416 1.1456 -2.8940 24 6 5.5989 -0.1977 0.9522 25 6 4.2224 -0.1928 0.8488 26 1 -0.3632 -0.5139 0.8900 27 1 -0.3633 1.0276 0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 1.6984 -2.0058 -0.0704 30 1 3.8190 -2.9066 -1.1323 31 1 6.2730 -2.9118 -0.9554 32 1 8.5097 1.6209 -0.0006 33 1 8.5412 1.7695 -1.7741 34 1 7.0583 1.2268 -0.9526 35 1 10.1719 0.1574 -3.1261 36 1 12.3856 0.6308 -5.5788 37 1 6.0991 0.5590 1.5384 38 1 3.6456 0.5678 1.3539 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126723830.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:02:41 Heat of formation + Delta-G solvation = -72.415905 kcal Electronic energy + Delta-G solvation = -21772.696189 eV Core-core repulsion = 18319.211712 eV Total energy + Delta-G solvation = -3453.484476 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.098 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.52100 -40.24887 -39.43642 -36.07553 -35.89694 -34.22153 -32.98775 -32.07473 -31.79111 -29.44434 -27.34048 -25.18218 -24.21996 -23.69201 -21.52922 -21.27163 -20.07734 -19.03083 -18.45818 -17.96572 -17.76651 -16.71184 -16.54433 -16.33925 -15.85735 -15.69247 -15.45746 -15.41159 -14.78516 -14.76044 -14.46441 -14.15203 -14.00250 -13.55886 -13.50638 -13.31794 -13.06058 -12.99849 -12.86982 -12.55109 -12.43587 -12.43241 -12.11715 -11.69067 -11.55708 -11.15669 -10.74030 -10.47065 -10.09438 -10.00196 -9.20511 -8.72713 -8.51191 -6.01219 -0.23085 0.34853 0.70749 1.37749 1.41170 1.49738 1.52568 1.69412 1.95373 2.05075 2.27830 2.71072 3.04138 3.14927 3.71840 3.90032 3.95199 3.96113 3.98293 4.25706 4.34055 4.37674 4.47109 4.56087 4.61593 4.67080 4.68927 4.90930 5.00486 5.04784 5.10551 5.21443 5.36632 5.37042 5.38213 5.87742 5.90817 6.39693 6.49207 7.04006 7.09587 7.43359 7.97593 8.65721 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.029699 B = 0.002633 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.558188 B =10632.584850 C =10960.263275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.502 3.498 3 O -0.576 6.576 4 N -0.662 5.662 5 C 0.166 3.834 6 C -0.143 4.143 7 C -0.058 4.058 8 C -0.151 4.151 9 S -0.121 6.121 10 C -0.079 4.079 11 H 0.108 0.892 12 C -0.128 4.128 13 C 0.457 3.543 14 O -0.618 6.618 15 N -0.558 5.558 16 C -0.337 4.337 17 H 0.082 0.918 18 C -0.010 4.010 19 N -0.917 5.917 20 Si 0.996 3.004 21 H -0.270 1.270 22 H -0.268 1.268 23 H -0.271 1.271 24 C -0.056 4.056 25 C -0.142 4.142 26 H 0.118 0.882 27 H 0.090 0.910 28 H 0.118 0.882 29 H 0.433 0.567 30 H 0.166 0.834 31 H 0.143 0.857 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.397 0.603 36 H 0.280 0.720 37 H 0.132 0.868 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.680 -5.101 5.361 27.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.293 3.707 3 O -0.454 6.454 4 N -0.309 5.309 5 C 0.070 3.930 6 C -0.165 4.165 7 C -0.079 4.079 8 C -0.263 4.263 9 S 0.112 5.888 10 C -0.211 4.211 11 H 0.126 0.874 12 C -0.187 4.187 13 C 0.243 3.757 14 O -0.505 6.505 15 N -0.194 5.194 16 C -0.466 4.466 17 H 0.100 0.900 18 C -0.210 4.210 19 N -0.557 5.557 20 Si 0.819 3.181 21 H -0.195 1.195 22 H -0.193 1.193 23 H -0.196 1.196 24 C -0.077 4.077 25 C -0.164 4.164 26 H 0.137 0.863 27 H 0.109 0.891 28 H 0.136 0.864 29 H 0.273 0.727 30 H 0.184 0.816 31 H 0.161 0.839 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.231 0.769 36 H 0.090 0.910 37 H 0.150 0.850 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -25.144 -4.930 6.588 26.456 hybrid contribution -0.041 0.447 -1.488 1.555 sum -25.184 -4.483 5.100 26.084 Atomic orbital electron populations 1.21963 0.86493 1.06594 1.07083 1.22007 0.92814 0.82332 0.73512 1.90772 1.71942 1.33146 1.49580 1.43711 1.03911 1.11070 1.72227 1.18032 0.84181 0.95996 0.94769 1.21181 0.92993 1.01060 1.01230 1.21652 0.94661 0.96466 0.95150 1.21904 0.96812 1.01229 1.06371 1.86150 0.97445 1.72355 1.32829 1.23285 0.95493 1.01490 1.00794 0.87396 1.21905 1.01861 0.91833 1.03112 1.19767 0.88870 0.83314 0.83715 1.90518 1.66217 1.55523 1.38217 1.41807 1.07229 1.61068 1.09297 1.19679 0.82530 1.47571 0.96836 0.90020 1.26100 1.05175 0.95711 0.94018 1.69667 1.38128 1.46826 1.01088 0.84948 0.76376 0.79031 0.77749 1.19526 1.19286 1.19599 1.21513 0.93410 0.96275 0.96537 1.21154 0.94140 1.00491 1.00623 0.86333 0.89107 0.86361 0.72658 0.81622 0.83932 0.91785 0.91475 0.90240 0.76885 0.91047 0.85021 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.65 10.32 71.24 0.74 0.09 16 2 C 0.50 7.39 7.69 87.66 0.67 8.06 16 3 O -0.58 -14.98 14.74 -3.09 -0.05 -15.02 16 4 N -0.66 -7.70 5.35 -303.32 -1.62 -9.32 16 5 C 0.17 3.16 6.29 38.11 0.24 3.40 16 6 C -0.14 -2.49 9.95 22.37 0.22 -2.27 16 7 C -0.06 -1.35 9.78 22.39 0.22 -1.14 16 8 C -0.15 -4.32 5.24 22.61 0.12 -4.20 16 9 S -0.12 -4.46 20.34 -56.49 -1.15 -5.61 16 10 C -0.08 -3.10 3.14 29.85 0.09 -3.01 16 11 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 12 C -0.13 -4.38 9.02 71.98 0.65 -3.73 16 13 C 0.46 23.11 6.96 87.66 0.61 23.72 16 14 O -0.62 -36.02 15.62 -3.08 -0.05 -36.07 16 15 N -0.56 -29.64 5.29 -306.99 -1.62 -31.26 16 16 C -0.34 -19.44 9.68 84.04 0.81 -18.63 16 17 H 0.08 5.00 7.16 -2.91 -0.02 4.98 16 18 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 19 N -0.92 -49.78 13.05 21.66 0.28 -49.49 16 20 Si 1.00 43.16 29.55 68.60 2.03 45.18 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 C -0.06 -1.51 9.33 22.39 0.21 -1.30 16 25 C -0.14 -3.45 8.65 22.38 0.19 -3.25 16 26 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 27 H 0.09 0.55 8.12 -2.39 -0.02 0.53 16 28 H 0.12 -0.11 8.14 -2.39 -0.02 -0.13 16 29 H 0.43 1.21 8.82 -92.71 -0.82 0.39 16 30 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 31 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 32 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.08 2.37 7.38 -2.39 -0.02 2.35 16 35 H 0.40 20.06 7.90 -92.71 -0.73 19.33 16 36 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 37 H 0.13 3.49 8.06 -2.91 -0.02 3.47 16 38 H 0.13 3.31 6.39 -2.91 -0.02 3.29 16 Total: -1.00 -77.93 345.78 2.62 -75.30 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: -0.44 Total: 28.59 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 5.25 Total: -2.29 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -2.96 Total: -90.08 kcal Atomic # 8 Polarization: -51.00 SS G_CDS: -0.09 Total: -51.09 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: -4.46 SS G_CDS: -1.15 Total: -5.61 kcal Total: -77.93 2.62 -75.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126723830.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.888 kcal (2) G-P(sol) polarization free energy of solvation -77.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds