Wall clock time and date at job start Fri Apr 10 2020 22:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21291 * 119.99945 * 2 1 4 4 N 1.34780 * 120.00017 * 180.02562 * 2 1 3 5 5 C 1.40152 * 119.99896 * 185.13064 * 4 2 1 6 6 C 1.38864 * 119.99012 * 212.77535 * 5 4 2 7 7 C 1.38041 * 120.01213 * 179.72598 * 6 5 4 8 8 C 1.38947 * 119.98382 * 0.54846 * 7 6 5 9 9 S 1.76208 * 120.00725 * 179.74869 * 8 7 6 10 10 C 1.81399 * 102.99567 * 275.48777 * 9 8 7 11 11 H 1.08997 * 109.47830 * 52.75756 * 10 9 8 12 12 C 1.52998 * 109.47100 * 292.75529 * 10 9 8 13 13 C 1.50702 * 109.46962 * 172.76324 * 10 9 8 14 14 O 1.21289 * 120.00107 * 24.99266 * 13 10 9 15 15 N 1.34779 * 119.99942 * 205.00408 * 13 10 9 16 16 C 1.37104 * 120.00000 * 179.97438 * 15 13 10 17 17 H 1.07997 * 120.00089 * 359.97438 * 16 15 13 18 18 C 1.38943 * 119.99929 * 179.97438 * 16 15 13 19 19 N 1.31412 * 120.00293 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00108 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47173 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47591 * 119.99855 * 20 18 16 23 23 H 1.48500 * 109.47377 * 240.00085 * 20 18 16 24 24 C 1.38945 * 119.98510 * 359.72580 * 8 7 6 25 25 C 1.38041 * 119.98725 * 0.02562 * 24 8 7 26 26 H 1.09002 * 109.46810 * 269.98961 * 1 2 3 27 27 H 1.08994 * 109.47020 * 29.99626 * 1 2 3 28 28 H 1.08997 * 109.47022 * 150.00049 * 1 2 3 29 29 H 0.96996 * 120.00069 * 5.13037 * 4 2 1 30 30 H 1.08005 * 119.99460 * 0.02562 * 6 5 4 31 31 H 1.08001 * 120.00800 * 180.27671 * 7 6 5 32 32 H 1.09004 * 109.47695 * 305.21073 * 12 10 9 33 33 H 1.09000 * 109.47070 * 65.21283 * 12 10 9 34 34 H 1.08998 * 109.47440 * 185.21170 * 12 10 9 35 35 H 0.97002 * 119.99747 * 359.97438 * 15 13 10 36 36 H 0.97004 * 120.00421 * 180.02562 * 19 18 16 37 37 H 1.07998 * 120.00944 * 180.02562 * 24 8 7 38 38 H 1.08002 * 119.99521 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5782 -1.1697 0.1080 6 6 4.3225 -2.1517 -0.5324 7 6 5.6991 -2.1512 -0.4304 8 6 6.3393 -1.1746 0.3225 9 16 8.0961 -1.1773 0.4585 10 6 8.3983 -2.3407 1.8170 11 1 7.8870 -3.2810 1.6109 12 6 7.8678 -1.7477 3.1239 13 6 9.8789 -2.5913 1.9438 14 8 10.6705 -1.7607 1.5505 15 7 10.3236 -3.7385 2.4941 16 6 11.6706 -3.9667 2.6090 17 1 12.3754 -3.2274 2.2581 18 6 12.1290 -5.1491 3.1767 19 7 11.2714 -6.0485 3.6041 20 14 13.9642 -5.4604 3.3326 21 1 14.7114 -4.3020 2.7802 22 1 14.3161 -5.6398 4.7641 23 1 14.3242 -6.6869 2.5769 24 6 5.5939 -0.1955 0.9678 25 6 4.2177 -0.1938 0.8610 26 1 -0.3633 -0.0002 1.0277 27 1 -0.3633 0.8900 -0.5137 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6989 -2.0055 -0.0760 30 1 3.8244 -2.9132 -1.1143 31 1 6.2781 -2.9124 -0.9322 32 1 8.3109 -0.7646 3.2831 33 1 6.7836 -1.6525 3.0659 34 1 8.1311 -2.4035 3.9538 35 1 9.6905 -4.4027 2.8089 36 1 11.5914 -6.8738 4.0008 37 1 6.0912 0.5640 1.5528 38 1 3.6381 0.5669 1.3629 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126724081.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:02:44 Heat of formation + Delta-G solvation = -48.820823 kcal Electronic energy + Delta-G solvation = -21706.737203 eV Core-core repulsion = 18254.275886 eV Total energy + Delta-G solvation = -3452.461317 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.098 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.75863 -38.55584 -38.28436 -35.09484 -34.02665 -32.55134 -31.21453 -31.12893 -30.97654 -28.77222 -25.42548 -23.55231 -23.31206 -22.75540 -20.78816 -19.44292 -18.21499 -18.03609 -17.29107 -17.19124 -16.05328 -15.87718 -15.06325 -14.78032 -14.68445 -14.54811 -13.99597 -13.96549 -13.64552 -13.55288 -13.39605 -13.07429 -12.87938 -12.78495 -12.57484 -11.84174 -11.66929 -11.53306 -11.47396 -11.16132 -11.09814 -10.82851 -10.36342 -10.27741 -10.19974 -9.65837 -9.57304 -9.06079 -8.49836 -8.23386 -8.03373 -7.31120 -6.46954 -3.87812 0.79973 1.29099 1.95702 2.21409 2.64577 2.97633 3.14822 3.25402 3.33171 3.67356 3.84833 4.14323 4.25597 4.64801 4.75610 4.82502 4.84390 4.87143 5.15147 5.21432 5.29802 5.33495 5.38979 5.47829 5.52385 5.80557 5.85720 5.92688 6.05247 6.07525 6.24678 6.25282 6.35608 6.43245 6.77868 6.96807 7.51222 7.68095 7.98290 8.52491 9.11059 9.45502 9.95931 10.70471 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.037060 B = 0.002522 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.342304 B =11099.092355 C =11359.349170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.508 3.492 3 O -0.523 6.523 4 N -0.676 5.676 5 C 0.159 3.841 6 C -0.155 4.155 7 C -0.054 4.054 8 C -0.139 4.139 9 S -0.086 6.086 10 C -0.087 4.087 11 H 0.092 0.908 12 C -0.136 4.136 13 C 0.460 3.540 14 O -0.577 6.577 15 N -0.552 5.552 16 C -0.299 4.299 17 H 0.106 0.894 18 C 0.023 3.977 19 N -0.899 5.899 20 Si 0.931 3.069 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.281 1.281 24 C -0.050 4.050 25 C -0.132 4.132 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.412 0.588 30 H 0.128 0.872 31 H 0.136 0.864 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.393 0.607 36 H 0.272 0.728 37 H 0.136 0.864 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.236 4.745 -4.890 24.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.297 3.703 3 O -0.397 6.397 4 N -0.321 5.321 5 C 0.065 3.935 6 C -0.177 4.177 7 C -0.075 4.075 8 C -0.251 4.251 9 S 0.147 5.853 10 C -0.219 4.219 11 H 0.111 0.889 12 C -0.195 4.195 13 C 0.243 3.757 14 O -0.462 6.462 15 N -0.188 5.188 16 C -0.428 4.428 17 H 0.124 0.876 18 C -0.179 4.179 19 N -0.540 5.540 20 Si 0.758 3.242 21 H -0.191 1.191 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.071 4.071 25 C -0.153 4.153 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.101 0.899 29 H 0.248 0.752 30 H 0.146 0.854 31 H 0.154 0.846 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.227 0.773 36 H 0.082 0.918 37 H 0.153 0.847 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -21.489 6.465 -5.656 23.142 hybrid contribution -0.866 -1.961 0.964 2.350 sum -22.354 4.504 -4.692 23.281 Atomic orbital electron populations 1.21894 0.90610 1.05310 1.05224 1.21050 0.90938 0.83158 0.75192 1.90778 1.70505 1.31182 1.47282 1.43766 1.05370 1.09990 1.73009 1.17873 0.82431 0.96976 0.96208 1.20879 0.94018 1.00665 1.02136 1.21493 0.93444 0.96954 0.95647 1.22118 0.99662 0.99637 1.03633 1.86117 0.95092 1.59172 1.44915 1.23440 1.00155 1.00556 0.97737 0.88922 1.21960 1.00200 1.02167 0.95203 1.18950 0.87237 0.84407 0.85058 1.90559 1.56050 1.45921 1.53634 1.41795 1.08306 1.15869 1.52837 1.19797 0.82312 1.03295 1.37441 0.87643 1.25291 1.00442 0.95428 0.96693 1.69622 1.34679 1.08954 1.40748 0.85771 0.81981 0.78533 0.77914 1.19094 1.20686 1.20671 1.21540 0.92750 0.96821 0.95963 1.21145 0.94664 0.99819 0.99714 0.88343 0.88437 0.89903 0.75239 0.85406 0.84644 0.91003 0.92506 0.91371 0.77332 0.91803 0.84665 0.84643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.63 10.31 36.01 0.37 -0.26 16 2 C 0.51 4.29 7.68 -10.98 -0.08 4.21 16 3 O -0.52 -6.89 14.76 5.55 0.08 -6.81 16 4 N -0.68 -5.05 5.35 -9.81 -0.05 -5.11 16 5 C 0.16 1.72 6.29 -83.59 -0.53 1.20 16 6 C -0.15 -1.61 9.95 -39.42 -0.39 -2.00 16 7 C -0.05 -0.68 9.78 -39.39 -0.39 -1.07 16 8 C -0.14 -2.02 5.29 -39.06 -0.21 -2.22 16 9 S -0.09 -1.55 20.39 -107.50 -2.19 -3.75 16 10 C -0.09 -1.63 3.13 -27.88 -0.09 -1.72 16 11 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 12 C -0.14 -2.21 9.04 37.16 0.34 -1.87 16 13 C 0.46 11.10 6.91 -10.98 -0.08 11.02 16 14 O -0.58 -16.07 15.71 5.55 0.09 -15.98 16 15 N -0.55 -14.06 5.29 -10.96 -0.06 -14.12 16 16 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 17 H 0.11 3.08 7.16 -52.49 -0.38 2.71 16 18 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 19 N -0.90 -24.21 13.05 55.50 0.72 -23.48 16 20 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 24 C -0.05 -0.67 9.43 -39.39 -0.37 -1.04 16 25 C -0.13 -1.65 8.65 -39.42 -0.34 -1.99 16 26 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.41 1.54 8.82 -40.82 -0.36 1.18 16 30 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 31 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.06 0.79 7.52 -51.93 -0.39 0.40 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 36 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.14 1.72 6.39 -52.49 -0.34 1.39 16 LS Contribution 346.19 15.07 5.22 5.22 Total: -1.00 -34.53 346.19 -7.94 -42.47 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -4.72 Total: 9.32 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -2.00 Total: -3.67 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: 0.61 Total: -42.70 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: 0.17 Total: -22.79 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.19 Total: -3.75 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.53 -7.94 -42.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126724081.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.348 kcal (2) G-P(sol) polarization free energy of solvation -34.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds