Wall clock time and date at job start Fri Apr 10 2020 22:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21291 * 119.99945 * 2 1 4 4 N 1.34780 * 120.00017 * 180.02562 * 2 1 3 5 5 C 1.40152 * 119.99896 * 185.13064 * 4 2 1 6 6 C 1.38864 * 119.99012 * 212.77535 * 5 4 2 7 7 C 1.38041 * 120.01213 * 179.72598 * 6 5 4 8 8 C 1.38947 * 119.98382 * 0.54846 * 7 6 5 9 9 S 1.76208 * 120.00725 * 179.74869 * 8 7 6 10 10 C 1.81399 * 102.99567 * 275.48777 * 9 8 7 11 11 H 1.08997 * 109.47830 * 52.75756 * 10 9 8 12 12 C 1.52998 * 109.47100 * 292.75529 * 10 9 8 13 13 C 1.50702 * 109.46962 * 172.76324 * 10 9 8 14 14 O 1.21289 * 120.00107 * 24.99266 * 13 10 9 15 15 N 1.34779 * 119.99942 * 205.00408 * 13 10 9 16 16 C 1.37104 * 120.00000 * 179.97438 * 15 13 10 17 17 H 1.07997 * 120.00089 * 359.97438 * 16 15 13 18 18 C 1.38943 * 119.99929 * 179.97438 * 16 15 13 19 19 N 1.31412 * 120.00293 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00108 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47173 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47591 * 119.99855 * 20 18 16 23 23 H 1.48500 * 109.47377 * 240.00085 * 20 18 16 24 24 C 1.38945 * 119.98510 * 359.72580 * 8 7 6 25 25 C 1.38041 * 119.98725 * 0.02562 * 24 8 7 26 26 H 1.09002 * 109.46810 * 269.98961 * 1 2 3 27 27 H 1.08994 * 109.47020 * 29.99626 * 1 2 3 28 28 H 1.08997 * 109.47022 * 150.00049 * 1 2 3 29 29 H 0.96996 * 120.00069 * 5.13037 * 4 2 1 30 30 H 1.08005 * 119.99460 * 0.02562 * 6 5 4 31 31 H 1.08001 * 120.00800 * 180.27671 * 7 6 5 32 32 H 1.09004 * 109.47695 * 305.21073 * 12 10 9 33 33 H 1.09000 * 109.47070 * 65.21283 * 12 10 9 34 34 H 1.08998 * 109.47440 * 185.21170 * 12 10 9 35 35 H 0.97002 * 119.99747 * 359.97438 * 15 13 10 36 36 H 0.97004 * 120.00421 * 180.02562 * 19 18 16 37 37 H 1.07998 * 120.00944 * 180.02562 * 24 8 7 38 38 H 1.08002 * 119.99521 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5782 -1.1697 0.1080 6 6 4.3225 -2.1517 -0.5324 7 6 5.6991 -2.1512 -0.4304 8 6 6.3393 -1.1746 0.3225 9 16 8.0961 -1.1773 0.4585 10 6 8.3983 -2.3407 1.8170 11 1 7.8870 -3.2810 1.6109 12 6 7.8678 -1.7477 3.1239 13 6 9.8789 -2.5913 1.9438 14 8 10.6705 -1.7607 1.5505 15 7 10.3236 -3.7385 2.4941 16 6 11.6706 -3.9667 2.6090 17 1 12.3754 -3.2274 2.2581 18 6 12.1290 -5.1491 3.1767 19 7 11.2714 -6.0485 3.6041 20 14 13.9642 -5.4604 3.3326 21 1 14.7114 -4.3020 2.7802 22 1 14.3161 -5.6398 4.7641 23 1 14.3242 -6.6869 2.5769 24 6 5.5939 -0.1955 0.9678 25 6 4.2177 -0.1938 0.8610 26 1 -0.3633 -0.0002 1.0277 27 1 -0.3633 0.8900 -0.5137 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6989 -2.0055 -0.0760 30 1 3.8244 -2.9132 -1.1143 31 1 6.2781 -2.9124 -0.9322 32 1 8.3109 -0.7646 3.2831 33 1 6.7836 -1.6525 3.0659 34 1 8.1311 -2.4035 3.9538 35 1 9.6905 -4.4027 2.8089 36 1 11.5914 -6.8738 4.0008 37 1 6.0912 0.5640 1.5528 38 1 3.6381 0.5669 1.3629 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126724081.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:02:43 Heat of formation + Delta-G solvation = -72.457969 kcal Electronic energy + Delta-G solvation = -21707.762187 eV Core-core repulsion = 18254.275886 eV Total energy + Delta-G solvation = -3453.486300 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.098 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.52460 -40.24120 -39.43889 -36.07507 -35.89988 -34.18270 -32.99250 -32.07665 -31.79736 -29.44391 -27.35501 -25.15027 -24.22296 -23.69364 -21.52922 -21.27285 -20.06718 -19.03370 -18.47113 -17.96203 -17.76220 -16.67182 -16.57856 -16.34324 -15.82753 -15.70031 -15.46571 -15.40304 -14.79803 -14.72293 -14.46342 -14.20288 -14.00367 -13.57072 -13.40839 -13.32625 -13.06133 -12.98172 -12.86999 -12.61518 -12.45049 -12.31944 -12.10572 -11.76047 -11.56725 -10.99923 -10.86213 -10.46124 -10.08476 -10.00466 -9.20331 -8.72979 -8.51279 -6.00816 -0.23248 0.34649 0.70361 1.34811 1.41741 1.47732 1.56165 1.69023 1.97637 2.06563 2.28107 2.71010 3.04813 3.15375 3.71782 3.90107 3.95893 3.97075 4.00178 4.28024 4.33889 4.37091 4.47211 4.55088 4.65144 4.66369 4.71568 4.91073 5.00316 5.08185 5.10289 5.20796 5.36404 5.37972 5.38075 5.87507 5.91704 6.39572 6.49986 7.04962 7.08877 7.44148 7.98805 8.66003 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.037060 B = 0.002522 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.342304 B =11099.092355 C =11359.349170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.503 3.497 3 O -0.576 6.576 4 N -0.662 5.662 5 C 0.165 3.835 6 C -0.143 4.143 7 C -0.059 4.059 8 C -0.149 4.149 9 S -0.130 6.130 10 C -0.076 4.076 11 H 0.110 0.890 12 C -0.127 4.127 13 C 0.457 3.543 14 O -0.620 6.620 15 N -0.558 5.558 16 C -0.335 4.335 17 H 0.080 0.920 18 C -0.009 4.009 19 N -0.916 5.916 20 Si 0.995 3.005 21 H -0.274 1.274 22 H -0.269 1.269 23 H -0.269 1.269 24 C -0.056 4.056 25 C -0.142 4.142 26 H 0.115 0.885 27 H 0.095 0.905 28 H 0.115 0.885 29 H 0.433 0.567 30 H 0.166 0.834 31 H 0.142 0.858 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.398 0.602 36 H 0.280 0.720 37 H 0.133 0.867 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.936 3.230 -5.134 26.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.294 3.706 3 O -0.455 6.455 4 N -0.309 5.309 5 C 0.070 3.930 6 C -0.164 4.164 7 C -0.080 4.080 8 C -0.261 4.261 9 S 0.104 5.896 10 C -0.208 4.208 11 H 0.128 0.872 12 C -0.186 4.186 13 C 0.243 3.757 14 O -0.507 6.507 15 N -0.194 5.194 16 C -0.464 4.464 17 H 0.098 0.902 18 C -0.210 4.210 19 N -0.556 5.556 20 Si 0.818 3.182 21 H -0.198 1.198 22 H -0.194 1.194 23 H -0.194 1.194 24 C -0.077 4.077 25 C -0.164 4.164 26 H 0.133 0.867 27 H 0.114 0.886 28 H 0.134 0.866 29 H 0.273 0.727 30 H 0.184 0.816 31 H 0.160 0.840 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.232 0.768 36 H 0.089 0.911 37 H 0.150 0.850 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -24.241 4.893 -5.889 25.422 hybrid contribution -0.195 -1.457 0.986 1.770 sum -24.437 3.436 -4.904 25.160 Atomic orbital electron populations 1.21935 0.86505 1.06872 1.06710 1.21996 0.92792 0.82317 0.73470 1.90766 1.71887 1.33116 1.49710 1.43767 1.04000 1.11098 1.72028 1.18032 0.84217 0.96006 0.94773 1.21164 0.92961 1.00934 1.01390 1.21645 0.94645 0.96505 0.95221 1.21873 0.96733 1.01490 1.05998 1.86240 0.99517 1.59158 1.44711 1.23269 0.96030 1.01951 0.99514 0.87197 1.21903 1.01738 1.01296 0.93709 1.19810 0.89476 0.83202 0.83213 1.90523 1.58075 1.47095 1.54971 1.41823 1.07770 1.16527 1.53287 1.19732 0.83219 1.03868 1.39623 0.90174 1.26071 1.04720 0.94594 0.95576 1.69672 1.36347 1.09220 1.40372 0.84844 0.76637 0.78275 0.78423 1.19848 1.19382 1.19396 1.21509 0.93261 0.96715 0.96234 1.21159 0.94161 1.00521 1.00543 0.86687 0.88617 0.86614 0.72701 0.81640 0.84002 0.92004 0.89717 0.91370 0.76809 0.91053 0.84958 0.85171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.62 10.31 71.24 0.73 0.12 16 2 C 0.50 7.30 7.68 87.66 0.67 7.97 16 3 O -0.58 -14.74 14.76 -3.06 -0.05 -14.79 16 4 N -0.66 -7.72 5.35 -303.33 -1.62 -9.34 16 5 C 0.17 3.15 6.29 38.11 0.24 3.39 16 6 C -0.14 -2.50 9.95 22.37 0.22 -2.27 16 7 C -0.06 -1.38 9.78 22.39 0.22 -1.16 16 8 C -0.15 -4.25 5.29 22.61 0.12 -4.14 16 9 S -0.13 -4.78 20.39 -56.49 -1.15 -5.93 16 10 C -0.08 -2.90 3.13 29.85 0.09 -2.80 16 11 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 12 C -0.13 -4.11 9.04 71.98 0.65 -3.46 16 13 C 0.46 22.80 6.91 87.66 0.61 23.40 16 14 O -0.62 -36.06 15.71 -3.06 -0.05 -36.11 16 15 N -0.56 -29.20 5.29 -306.99 -1.62 -30.82 16 16 C -0.33 -19.18 9.68 84.04 0.81 -18.37 16 17 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 18 C -0.01 -0.49 5.50 84.92 0.47 -0.02 16 19 N -0.92 -48.96 13.05 21.66 0.28 -48.68 16 20 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 24 C -0.06 -1.50 9.43 22.39 0.21 -1.29 16 25 C -0.14 -3.43 8.65 22.37 0.19 -3.23 16 26 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 27 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.12 -0.29 8.14 -2.39 -0.02 -0.31 16 29 H 0.43 1.30 8.82 -92.71 -0.82 0.48 16 30 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 31 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 32 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.08 2.26 7.52 -2.39 -0.02 2.24 16 34 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 36 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 37 H 0.13 3.49 8.06 -2.91 -0.02 3.46 16 38 H 0.13 3.30 6.39 -2.91 -0.02 3.28 16 Total: -1.00 -77.90 346.19 2.62 -75.28 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: -0.44 Total: 27.37 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 5.24 Total: -1.86 kcal Atomic # 7 Polarization: -85.87 SS G_CDS: -2.96 Total: -88.84 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: -0.09 Total: -50.90 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: -4.78 SS G_CDS: -1.15 Total: -5.93 kcal Total: -77.90 2.62 -75.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126724081.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.824 kcal (2) G-P(sol) polarization free energy of solvation -77.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds