Wall clock time and date at job start Fri Apr 10 2020 22:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40081 * 126.03670 * 2 1 4 4 C 1.30837 * 108.20460 * 179.73964 * 3 2 1 5 5 C 1.39871 * 108.20404 * 0.44224 * 4 3 2 6 6 C 1.50700 * 126.04112 * 179.81928 * 5 4 3 7 7 S 1.81394 * 109.46854 * 269.68869 * 6 5 4 8 8 C 1.81399 * 102.99894 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.47445 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.47245 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.46946 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99876 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99789 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00287 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99733 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47151 * 90.00298 * 15 13 11 17 17 H 1.48507 * 109.47197 * 210.00055 * 15 13 11 18 18 H 1.48498 * 109.47171 * 330.00226 * 15 13 11 19 19 C 1.34952 * 126.03729 * 180.02562 * 2 1 3 20 20 C 1.50697 * 126.12720 * 359.95565 * 19 2 1 21 21 F 1.39899 * 109.46975 * 30.02988 * 20 19 2 22 22 F 1.39902 * 109.46771 * 150.02348 * 20 19 2 23 23 F 1.39893 * 109.47402 * 270.02682 * 20 19 2 24 24 H 1.08998 * 109.46879 * 269.97346 * 1 2 3 25 25 H 1.08999 * 109.47101 * 29.97483 * 1 2 3 26 26 H 1.09008 * 109.46655 * 149.97775 * 1 2 3 27 27 H 1.07998 * 125.90002 * 180.25870 * 4 3 2 28 28 H 1.09002 * 109.46755 * 149.68793 * 6 5 4 29 29 H 1.08998 * 109.46859 * 29.68559 * 6 5 4 30 30 H 1.09001 * 109.47190 * 299.99732 * 8 7 6 31 31 H 1.09004 * 109.47089 * 59.99865 * 8 7 6 32 32 H 1.09001 * 109.46962 * 300.00183 * 9 8 7 33 33 H 1.09004 * 109.46832 * 60.00020 * 9 8 7 34 34 H 1.09001 * 109.47372 * 300.00032 * 10 9 8 35 35 H 1.09004 * 109.47108 * 60.00288 * 10 9 8 36 36 H 0.96996 * 120.00180 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5346 0.7321 0.0056 5 6 3.5438 -0.6666 -0.0008 6 6 4.7681 -1.5453 -0.0014 7 16 5.2587 -1.8974 -1.7118 8 6 6.7236 -2.9478 -1.5081 9 6 7.2667 -3.3382 -2.8842 10 6 8.5025 -4.2236 -2.7123 11 6 9.0378 -4.6076 -4.0678 12 1 8.5459 -4.2550 -4.9623 13 6 10.1560 -5.4082 -4.1658 14 7 10.7553 -5.8371 -3.0766 15 14 10.8190 -5.8847 -5.8459 16 1 11.8097 -4.8726 -6.2925 17 1 11.4743 -7.2147 -5.7605 18 1 9.7002 -5.9458 -6.8205 19 6 2.2590 -1.0913 -0.0005 20 6 1.7974 -2.5258 -0.0002 21 9 0.5671 -2.6200 -0.6595 22 9 2.7419 -3.3196 -0.6598 23 9 1.6548 -2.9696 1.3188 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8899 -0.5142 27 1 4.4054 1.3710 0.0111 28 1 4.5444 -2.4803 0.5123 29 1 5.5823 -1.0342 0.5123 30 1 7.4888 -2.4012 -0.9569 31 1 6.4515 -3.8477 -0.9566 32 1 6.5013 -3.8849 -3.4351 33 1 7.5387 -2.4384 -3.4361 34 1 9.2677 -3.6765 -2.1616 35 1 8.2309 -5.1234 -2.1603 36 1 11.5422 -6.4000 -3.1456 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161941165.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:02:59 Heat of formation + Delta-G solvation = -83.496663 kcal Electronic energy + Delta-G solvation = -22701.847617 eV Core-core repulsion = 18706.025903 eV Total energy + Delta-G solvation = -3995.821714 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.087 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.58036 -48.16105 -47.96739 -41.86148 -34.43333 -34.27992 -32.68408 -32.00012 -29.43356 -27.47047 -26.41428 -25.54174 -23.33596 -21.76000 -21.16016 -20.18680 -18.96186 -18.68791 -18.15015 -16.50065 -16.25069 -16.13186 -15.63131 -15.05352 -14.91714 -14.67767 -14.54431 -14.49358 -14.43748 -14.29221 -14.14486 -14.05627 -13.53474 -13.43042 -12.98851 -12.70927 -12.43915 -12.32446 -11.73067 -11.67096 -11.21036 -10.89456 -10.86039 -10.54126 -10.11789 -9.89349 -9.76502 -9.29476 -9.11560 -8.83647 -8.35273 -7.38069 -6.00402 -4.02705 0.81506 1.60205 1.72053 2.27188 2.49470 2.92014 3.17735 3.33150 3.39223 3.43337 3.62138 3.92393 3.96974 4.46770 4.55529 4.62733 4.66561 4.83722 4.97567 5.11287 5.35646 5.41479 5.44588 5.54883 5.67443 6.00436 6.16504 6.17145 6.58588 6.74802 7.00605 7.04624 7.65375 7.77879 7.98876 8.40923 9.03850 9.61468 11.10983 Molecular weight = 308.09amu Principal moments of inertia in cm(-1) A = 0.027430 B = 0.002714 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.526729 B =10313.406934 C =10697.816008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.344 5.344 3 N -0.258 5.258 4 C 0.066 3.934 5 C -0.144 4.144 6 C -0.025 4.025 7 S -0.261 6.261 8 C -0.075 4.075 9 C -0.094 4.094 10 C 0.028 3.972 11 C -0.520 4.520 12 H 0.056 0.944 13 C 0.057 3.943 14 N -0.896 5.896 15 Si 0.893 3.107 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.007 4.007 20 C 0.538 3.462 21 F -0.175 7.175 22 F -0.142 7.142 23 F -0.169 7.169 24 H 0.083 0.917 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.200 0.800 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.017 0.983 35 H 0.018 0.982 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.609 11.518 10.701 26.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.127 5.127 3 N -0.079 5.079 4 C -0.120 4.120 5 C -0.158 4.158 6 C -0.174 4.174 7 S -0.032 6.032 8 C -0.223 4.223 9 C -0.134 4.134 10 C -0.011 4.011 11 C -0.558 4.558 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.536 5.536 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.138 4.138 20 C 0.481 3.519 21 F -0.156 7.156 22 F -0.123 7.123 23 F -0.150 7.150 24 H 0.101 0.899 25 H 0.118 0.882 26 H 0.121 0.879 27 H 0.217 0.783 28 H 0.106 0.894 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.036 0.964 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -22.914 12.728 9.827 27.993 hybrid contribution 1.418 -1.605 0.294 2.162 sum -21.496 11.123 10.120 26.234 Atomic orbital electron populations 1.22367 0.72949 1.06310 1.04431 1.48338 1.07006 1.02042 1.55326 1.77497 1.01700 1.06595 1.22145 1.23917 0.95563 0.93479 0.99011 1.19285 0.91720 0.94378 1.10388 1.21701 0.96587 1.00811 0.98271 1.87082 1.38945 1.67638 1.09501 1.23653 0.94893 0.99618 1.04127 1.21460 0.99614 1.00561 0.91718 1.19103 0.90704 0.93982 0.97347 1.21231 1.11445 1.30516 0.92633 0.92554 1.25018 0.96784 0.96031 0.96606 1.69960 1.20653 1.35473 1.27484 0.86580 0.79129 0.77809 0.84421 1.20639 1.21225 1.19814 1.20527 0.92922 0.88235 1.12076 1.17295 0.75182 0.84992 0.74405 1.93128 1.44661 1.96483 1.81317 1.93387 1.63521 1.74977 1.80384 1.93262 1.95525 1.90561 1.35684 0.89894 0.88170 0.87921 0.78333 0.89412 0.88420 0.90452 0.90488 0.92396 0.92403 0.96425 0.96414 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.49 11.19 59.85 0.67 1.16 16 2 N -0.34 -3.50 4.01 -63.88 -0.26 -3.75 16 3 N -0.26 -2.87 12.58 30.62 0.39 -2.48 16 4 C 0.07 0.68 11.96 -17.36 -0.21 0.47 16 5 C -0.14 -1.63 5.32 -105.05 -0.56 -2.19 16 6 C -0.03 -0.29 5.50 36.01 0.20 -0.09 16 7 S -0.26 -3.98 20.98 -107.50 -2.26 -6.23 16 8 C -0.07 -1.27 5.94 37.16 0.22 -1.05 16 9 C -0.09 -1.97 5.16 -26.73 -0.14 -2.10 16 10 C 0.03 0.71 4.97 -27.88 -0.14 0.57 16 11 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 12 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 15 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 C -0.01 -0.08 6.39 -82.26 -0.53 -0.60 16 20 C 0.54 5.76 3.29 36.00 0.12 5.88 16 21 F -0.17 -1.69 14.55 2.25 0.03 -1.66 16 22 F -0.14 -1.79 14.53 2.25 0.03 -1.76 16 23 F -0.17 -1.75 17.30 2.25 0.04 -1.71 16 24 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.10 0.57 5.56 -51.92 -0.29 0.28 16 27 H 0.20 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.09 1.00 7.08 -51.92 -0.37 0.63 16 29 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.25 8.14 -51.92 -0.42 0.82 16 31 H 0.08 1.28 8.14 -51.92 -0.42 0.85 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 332.42 15.07 5.01 5.01 Total: -1.00 -31.93 332.42 -6.50 -38.43 By element: Atomic # 1 Polarization: -0.47 SS G_CDS: -4.43 Total: -4.89 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -0.77 Total: -11.51 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.87 Total: -32.40 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.10 Total: -5.12 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -3.98 SS G_CDS: -2.26 Total: -6.23 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.93 -6.50 -38.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161941165.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.072 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds