Wall clock time and date at job start Fri Apr 10 2020 22:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40081 * 126.03670 * 2 1 4 4 C 1.30837 * 108.20460 * 179.73964 * 3 2 1 5 5 C 1.39871 * 108.20404 * 0.44224 * 4 3 2 6 6 C 1.50700 * 126.04112 * 179.81928 * 5 4 3 7 7 S 1.81394 * 109.46854 * 269.68869 * 6 5 4 8 8 C 1.81399 * 102.99894 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.47445 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.47245 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.46946 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99876 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99789 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00287 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99733 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47151 * 90.00298 * 15 13 11 17 17 H 1.48507 * 109.47197 * 210.00055 * 15 13 11 18 18 H 1.48498 * 109.47171 * 330.00226 * 15 13 11 19 19 C 1.34952 * 126.03729 * 180.02562 * 2 1 3 20 20 C 1.50697 * 126.12720 * 359.95565 * 19 2 1 21 21 F 1.39899 * 109.46975 * 30.02988 * 20 19 2 22 22 F 1.39902 * 109.46771 * 150.02348 * 20 19 2 23 23 F 1.39893 * 109.47402 * 270.02682 * 20 19 2 24 24 H 1.08998 * 109.46879 * 269.97346 * 1 2 3 25 25 H 1.08999 * 109.47101 * 29.97483 * 1 2 3 26 26 H 1.09008 * 109.46655 * 149.97775 * 1 2 3 27 27 H 1.07998 * 125.90002 * 180.25870 * 4 3 2 28 28 H 1.09002 * 109.46755 * 149.68793 * 6 5 4 29 29 H 1.08998 * 109.46859 * 29.68559 * 6 5 4 30 30 H 1.09001 * 109.47190 * 299.99732 * 8 7 6 31 31 H 1.09004 * 109.47089 * 59.99865 * 8 7 6 32 32 H 1.09001 * 109.46962 * 300.00183 * 9 8 7 33 33 H 1.09004 * 109.46832 * 60.00020 * 9 8 7 34 34 H 1.09001 * 109.47372 * 300.00032 * 10 9 8 35 35 H 1.09004 * 109.47108 * 60.00288 * 10 9 8 36 36 H 0.96996 * 120.00180 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5346 0.7321 0.0056 5 6 3.5438 -0.6666 -0.0008 6 6 4.7681 -1.5453 -0.0014 7 16 5.2587 -1.8974 -1.7118 8 6 6.7236 -2.9478 -1.5081 9 6 7.2667 -3.3382 -2.8842 10 6 8.5025 -4.2236 -2.7123 11 6 9.0378 -4.6076 -4.0678 12 1 8.5459 -4.2550 -4.9623 13 6 10.1560 -5.4082 -4.1658 14 7 10.7553 -5.8371 -3.0766 15 14 10.8190 -5.8847 -5.8459 16 1 11.8097 -4.8726 -6.2925 17 1 11.4743 -7.2147 -5.7605 18 1 9.7002 -5.9458 -6.8205 19 6 2.2590 -1.0913 -0.0005 20 6 1.7974 -2.5258 -0.0002 21 9 0.5671 -2.6200 -0.6595 22 9 2.7419 -3.3196 -0.6598 23 9 1.6548 -2.9696 1.3188 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8899 -0.5142 27 1 4.4054 1.3710 0.0111 28 1 4.5444 -2.4803 0.5123 29 1 5.5823 -1.0342 0.5123 30 1 7.4888 -2.4012 -0.9569 31 1 6.4515 -3.8477 -0.9566 32 1 6.5013 -3.8849 -3.4351 33 1 7.5387 -2.4384 -3.4361 34 1 9.2677 -3.6765 -2.1616 35 1 8.2309 -5.1234 -2.1603 36 1 11.5422 -6.4000 -3.1456 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161941165.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:02:59 Heat of formation + Delta-G solvation = -100.999987 kcal Electronic energy + Delta-G solvation = -22702.606619 eV Core-core repulsion = 18706.025903 eV Total energy + Delta-G solvation = -3996.580716 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.087 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.42683 -48.98293 -48.85378 -42.64044 -36.32759 -35.00947 -34.01590 -33.50177 -30.21937 -29.35380 -27.13047 -26.44051 -25.23326 -22.53461 -22.25024 -21.72924 -19.80071 -19.50847 -18.98624 -18.51472 -17.21905 -16.91036 -16.74587 -16.49700 -16.20667 -15.82456 -15.70145 -15.43678 -15.24544 -15.12995 -15.10319 -14.95885 -14.58528 -14.44218 -14.38063 -13.77255 -13.55214 -13.50921 -13.19232 -13.06898 -12.72445 -12.71859 -12.37812 -12.02348 -11.61647 -11.47545 -11.21284 -10.89124 -10.84368 -10.54659 -9.71231 -8.57626 -8.19784 -6.30501 -0.05527 0.71773 0.86973 1.41280 1.42398 1.47012 1.53195 1.54286 1.83072 2.35975 2.42233 2.79680 3.10021 3.13633 3.23164 3.71463 3.98850 4.05585 4.10218 4.16516 4.25341 4.41057 4.56034 4.57184 4.62037 4.64911 4.86668 5.02243 5.17050 5.25935 5.46937 5.51282 5.71652 5.84552 6.23460 6.24569 6.85334 7.38575 8.91960 Molecular weight = 308.09amu Principal moments of inertia in cm(-1) A = 0.027430 B = 0.002714 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.526729 B =10313.406934 C =10697.816008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.343 5.343 3 N -0.276 5.276 4 C 0.068 3.932 5 C -0.162 4.162 6 C -0.011 4.011 7 S -0.279 6.279 8 C -0.069 4.069 9 C -0.081 4.081 10 C 0.031 3.969 11 C -0.545 4.545 12 H 0.058 0.942 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.964 3.036 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.265 1.265 19 C -0.012 4.012 20 C 0.541 3.459 21 F -0.168 7.168 22 F -0.155 7.155 23 F -0.167 7.167 24 H 0.101 0.899 25 H 0.114 0.886 26 H 0.108 0.892 27 H 0.224 0.776 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.055 0.945 34 H -0.002 1.002 35 H -0.004 1.004 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.565 12.396 10.561 27.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.126 5.126 3 N -0.097 5.097 4 C -0.117 4.117 5 C -0.176 4.176 6 C -0.159 4.159 7 S -0.050 6.050 8 C -0.217 4.217 9 C -0.119 4.119 10 C -0.008 4.008 11 C -0.583 4.583 12 H 0.076 0.924 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.788 3.212 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.189 1.189 19 C -0.144 4.144 20 C 0.485 3.515 21 F -0.150 7.150 22 F -0.136 7.136 23 F -0.148 7.148 24 H 0.120 0.880 25 H 0.132 0.868 26 H 0.126 0.874 27 H 0.241 0.759 28 H 0.108 0.892 29 H 0.137 0.863 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.017 0.983 35 H 0.014 0.986 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.892 13.616 9.683 29.154 hybrid contribution 1.588 -1.836 0.410 2.462 sum -22.304 11.780 10.093 27.168 Atomic orbital electron populations 1.22697 0.71003 1.07275 1.05982 1.48697 1.08177 1.01493 1.54218 1.77482 1.02199 1.07169 1.22889 1.24341 0.96118 0.93342 0.97926 1.19335 0.91555 0.94865 1.11801 1.21710 0.97545 1.01384 0.95308 1.87082 1.37621 1.66940 1.13365 1.23364 0.96300 1.00455 1.01595 1.21159 0.97410 0.99302 0.94077 1.18979 0.92284 0.93737 0.95773 1.21677 1.11964 1.30833 0.93794 0.92404 1.25944 0.97064 0.95882 1.00763 1.70080 1.21186 1.36100 1.29851 0.85468 0.78622 0.77666 0.79438 1.19675 1.20627 1.18932 1.20635 0.93328 0.88513 1.11890 1.17241 0.75135 0.84770 0.74391 1.93141 1.44155 1.96459 1.81211 1.93360 1.64147 1.75372 1.80708 1.93266 1.95501 1.90542 1.35474 0.88040 0.86799 0.87394 0.75941 0.89173 0.86325 0.89625 0.90384 0.92999 0.92585 0.98313 0.98567 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 11.19 127.77 1.43 2.14 16 2 N -0.34 -6.35 4.01 -356.01 -1.43 -7.78 16 3 N -0.28 -5.62 12.58 -57.02 -0.72 -6.33 16 4 C 0.07 1.26 11.96 85.24 1.02 2.28 16 5 C -0.16 -3.37 5.32 -20.14 -0.11 -3.48 16 6 C -0.01 -0.24 5.50 71.24 0.39 0.15 16 7 S -0.28 -8.22 20.98 -56.49 -1.19 -9.40 16 8 C -0.07 -2.32 5.94 71.98 0.43 -1.90 16 9 C -0.08 -3.39 5.16 30.59 0.16 -3.23 16 10 C 0.03 1.64 4.97 29.85 0.15 1.79 16 11 C -0.54 -31.35 9.11 25.60 0.23 -31.12 16 12 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 13 C 0.00 0.08 5.46 84.65 0.46 0.54 16 14 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 15 Si 0.96 44.56 29.54 68.60 2.03 46.58 16 16 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 C -0.01 -0.24 6.39 41.40 0.26 0.03 16 20 C 0.54 10.92 3.29 71.24 0.23 11.15 16 21 F -0.17 -3.03 14.55 44.97 0.65 -2.37 16 22 F -0.15 -3.78 14.53 44.97 0.65 -3.13 16 23 F -0.17 -3.23 17.30 44.97 0.78 -2.45 16 24 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.11 0.99 5.56 -2.38 -0.01 0.98 16 27 H 0.22 2.70 8.06 -2.91 -0.02 2.68 16 28 H 0.09 1.92 7.08 -2.39 -0.02 1.90 16 29 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 31 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 34 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 35 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 36 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -68.13 332.42 6.83 -61.30 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: 1.10 Total: 1.61 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 4.66 Total: -21.65 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -1.86 Total: -70.49 kcal Atomic # 9 Polarization: -10.04 SS G_CDS: 2.09 Total: -7.95 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: -8.22 SS G_CDS: -1.19 Total: -9.40 kcal Total: -68.13 6.83 -61.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161941165.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.697 kcal (2) G-P(sol) polarization free energy of solvation -68.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds