Wall clock time and date at job start Fri Apr 10 2020 22:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46895 * 111.00622 * 2 1 4 4 C 1.50702 * 109.46897 * 293.95402 * 3 2 1 5 5 H 1.07995 * 120.00068 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00107 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99585 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00064 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47057 * 90.00126 * 8 6 4 10 10 H 1.48498 * 109.47170 * 210.00081 * 8 6 4 11 11 H 1.48497 * 109.47548 * 330.00513 * 8 6 4 12 12 C 1.46908 * 110.99873 * 123.95289 * 2 1 3 13 13 C 1.53001 * 109.47088 * 66.04603 * 12 2 1 14 14 S 1.81400 * 109.47228 * 180.02562 * 13 12 2 15 15 O 1.42099 * 110.54094 * 68.37321 * 14 13 12 16 16 O 1.42105 * 110.54073 * 291.62274 * 14 13 12 17 17 C 1.76199 * 104.44837 * 179.97438 * 14 13 12 18 18 C 1.38365 * 119.84663 * 89.99958 * 17 14 13 19 19 C 1.37947 * 120.14940 * 179.97438 * 18 17 14 20 20 C 1.39629 * 119.84839 * 359.97438 * 19 18 17 21 21 C 1.43205 * 120.15217 * 180.02562 * 20 19 18 22 22 N 9.27098 * 99.07570 * 236.12466 * 12 1 2 23 23 C 1.39630 * 119.69955 * 0.27680 * 20 19 18 24 24 C 1.37951 * 119.84578 * 359.46927 * 23 20 19 25 25 H 1.08996 * 109.47198 * 296.04934 * 1 2 3 26 26 H 1.09000 * 109.46573 * 56.04414 * 1 2 3 27 27 H 1.09001 * 109.47510 * 176.04749 * 1 2 3 28 28 H 1.09003 * 109.46832 * 53.94828 * 3 2 1 29 29 H 1.09000 * 109.47344 * 173.95355 * 3 2 1 30 30 H 0.97002 * 119.99571 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47091 * 306.04842 * 12 2 1 32 32 H 1.08996 * 109.47132 * 186.04504 * 12 2 1 33 33 H 1.08998 * 109.47462 * 59.99354 * 13 12 2 34 34 H 1.09009 * 109.46767 * 300.00159 * 13 12 2 35 35 H 1.07992 * 119.92688 * 0.02562 * 18 17 14 36 36 H 1.08003 * 120.07687 * 179.97438 * 19 18 17 37 37 H 1.07999 * 120.08232 * 179.69881 * 23 20 19 38 38 H 1.08002 * 119.92809 * 180.23515 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.6371 2.0470 -1.2985 5 1 1.0747 1.5112 -2.0488 6 6 2.0270 3.3494 -1.5286 7 7 2.7123 4.0017 -0.6150 8 14 1.5833 4.1866 -3.1383 9 1 0.2707 4.8667 -2.9972 10 1 2.6255 5.1881 -3.4791 11 1 1.5008 3.1709 -4.2184 12 6 1.9954 -0.7660 1.1377 13 6 1.6314 -2.2426 0.9704 14 16 2.2808 -3.1884 2.3756 15 8 1.5895 -2.8463 3.5690 16 8 3.7008 -3.2273 2.3369 17 6 1.7910 -4.8496 2.0514 18 6 2.6235 -5.6841 1.3268 19 6 2.2465 -6.9859 1.0698 20 6 1.0219 -7.4611 1.5431 21 6 0.6242 -8.8115 1.2806 22 7 0.3102 -9.8823 1.0679 23 6 0.1843 -6.6120 2.2692 24 6 0.5761 -5.3140 2.5235 25 1 -0.3633 0.4513 0.9232 26 1 -0.3632 0.5740 -0.8524 27 1 -0.3634 -1.0252 -0.0708 28 1 1.5612 1.9273 0.8309 29 1 3.0798 1.3442 0.1082 30 1 2.9869 4.9178 -0.7771 31 1 1.5610 -0.3873 2.0628 32 1 3.0797 -0.6612 1.1757 33 1 2.0656 -2.6214 0.0452 34 1 0.5470 -2.3475 0.9324 35 1 3.5710 -5.3157 0.9623 36 1 2.8971 -7.6361 0.5037 37 1 -0.7665 -6.9716 2.6341 38 1 -0.0691 -4.6572 3.0882 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169039774.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:03:03 Heat of formation + Delta-G solvation = -3.684845 kcal Electronic energy + Delta-G solvation = -21874.189081 eV Core-core repulsion = 18423.685007 eV Total energy + Delta-G solvation = -3450.504074 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.098 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.95842 -37.22874 -37.05748 -36.99009 -36.04846 -32.89087 -32.21869 -31.74422 -30.90834 -27.17124 -25.76614 -24.95157 -23.45946 -22.61136 -20.39520 -19.61060 -19.27908 -17.90898 -16.56657 -16.49688 -16.34197 -15.62836 -15.29134 -14.85984 -14.67458 -14.57017 -14.50436 -14.16768 -14.13788 -13.51420 -13.38247 -13.19983 -13.06207 -12.96763 -12.18723 -12.13514 -12.11682 -11.97232 -11.77899 -11.43975 -11.25419 -11.09826 -10.97868 -10.85695 -10.56938 -10.52931 -9.96582 -9.82690 -9.67308 -9.29798 -8.50531 -7.46099 -6.08875 -4.10948 -0.32575 0.00309 0.69741 2.08338 2.18910 2.69144 3.14841 3.22130 3.28015 3.34760 3.38328 3.69067 3.88549 4.24396 4.28018 4.36691 4.64236 4.67960 4.69985 4.91403 4.95981 5.00811 5.27310 5.33307 5.34498 5.49717 5.52649 5.60242 5.76518 5.93190 5.98164 6.10810 6.20821 6.61478 6.87176 7.13712 7.21452 7.68596 7.93546 8.05152 8.40626 8.95812 9.53425 11.02012 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.024574 B = 0.002684 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.156335 B =10430.462487 C =10926.438507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.531 5.531 3 C 0.188 3.812 4 C -0.510 4.510 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.061 3.939 13 C -0.591 4.591 14 S 2.489 3.511 15 O -0.934 6.934 16 O -0.931 6.931 17 C -0.633 4.633 18 C -0.022 4.022 19 C -0.092 4.092 20 C 0.022 3.978 21 C 0.248 3.752 22 N -0.401 5.401 23 C -0.093 4.093 24 C -0.024 4.024 25 H 0.016 0.984 26 H 0.079 0.921 27 H 0.047 0.953 28 H -0.004 1.004 29 H 0.034 0.966 30 H 0.262 0.738 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.146 0.854 34 H 0.135 0.865 35 H 0.156 0.844 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.494 -19.832 5.555 20.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.256 5.256 3 C 0.063 3.937 4 C -0.549 4.549 5 H 0.083 0.917 6 C -0.146 4.146 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.070 4.070 13 C -0.722 4.722 14 S 2.669 3.331 15 O -0.931 6.931 16 O -0.928 6.928 17 C -0.718 4.718 18 C -0.041 4.041 19 C -0.113 4.113 20 C 0.019 3.981 21 C -0.068 4.068 22 N -0.076 5.076 23 C -0.114 4.114 24 C -0.042 4.042 25 H 0.035 0.965 26 H 0.098 0.902 27 H 0.065 0.935 28 H 0.014 0.986 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.164 0.836 34 H 0.153 0.847 35 H 0.174 0.826 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.267 -21.306 5.545 22.257 hybrid contribution -0.847 0.812 -0.674 1.353 sum -4.114 -20.494 4.870 21.463 Atomic orbital electron populations 1.22333 0.88679 0.99689 1.01216 1.62176 1.07239 1.18139 1.38030 1.19837 0.95743 0.80979 0.97119 1.21110 1.35219 0.96953 1.01599 0.91748 1.25001 0.95210 0.97345 0.97078 1.69956 1.38030 1.11508 1.34096 0.86472 0.78009 0.79218 0.83551 1.20732 1.21208 1.19776 1.21754 1.01572 0.88611 0.95015 1.30350 1.13367 1.09616 1.18909 1.05833 0.75478 0.74557 0.77277 1.93578 1.75349 1.82453 1.41768 1.93589 1.26715 1.85572 1.86918 1.31104 1.04377 1.25517 1.10850 1.21000 0.98346 0.92569 0.92143 1.21341 0.94718 0.96279 0.98975 1.16282 0.95805 0.86193 0.99865 1.25671 0.94045 0.92812 0.94222 1.81291 1.07411 1.11438 1.07454 1.21328 0.99583 0.93296 0.97178 1.20976 0.93581 0.95701 0.93964 0.96515 0.90225 0.93467 0.98639 0.94776 0.92794 0.93981 0.89519 0.83631 0.84677 0.82648 0.83839 0.83889 0.82802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.14 60.06 0.55 1.06 16 2 N -0.53 -10.50 4.75 -244.37 -1.16 -11.66 16 3 C 0.19 4.67 4.72 -4.98 -0.02 4.65 16 4 C -0.51 -13.74 8.46 -34.44 -0.29 -14.04 16 5 H 0.06 1.70 7.12 -52.49 -0.37 1.33 16 6 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -25.94 13.29 55.43 0.74 -25.21 16 8 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 12 C 0.06 0.96 4.97 -3.82 -0.02 0.94 16 13 C -0.59 -6.30 5.90 37.16 0.22 -6.08 16 14 S 2.49 26.15 5.15 -107.50 -0.55 25.59 16 15 O -0.93 -12.22 17.11 -57.54 -0.98 -13.21 16 16 O -0.93 -12.37 17.11 -57.54 -0.98 -13.36 16 17 C -0.63 -5.12 5.66 -39.49 -0.22 -5.35 16 18 C -0.02 -0.15 9.45 -39.64 -0.37 -0.53 16 19 C -0.09 -0.56 9.76 -39.17 -0.38 -0.94 16 20 C 0.02 0.15 5.73 -106.93 -0.61 -0.47 16 21 C 0.25 2.04 15.33 -22.47 -0.34 1.69 16 22 N -0.40 -4.24 18.54 41.83 0.78 -3.47 16 23 C -0.09 -0.56 9.76 -39.17 -0.38 -0.94 16 24 C -0.02 -0.16 9.45 -39.64 -0.37 -0.54 16 25 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.08 1.51 6.76 -51.93 -0.35 1.16 16 27 H 0.05 0.64 6.47 -51.93 -0.34 0.31 16 28 H 0.00 -0.11 8.12 -51.93 -0.42 -0.53 16 29 H 0.03 0.90 7.93 -51.93 -0.41 0.49 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.04 0.65 8.12 -51.93 -0.42 0.22 16 32 H 0.09 1.36 7.93 -51.93 -0.41 0.95 16 33 H 0.15 1.33 8.14 -51.93 -0.42 0.90 16 34 H 0.14 1.16 6.55 -51.92 -0.34 0.82 16 35 H 0.16 0.90 7.56 -52.49 -0.40 0.51 16 36 H 0.14 0.57 8.06 -52.48 -0.42 0.15 16 37 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 38 H 0.15 0.85 7.55 -52.49 -0.40 0.46 16 LS Contribution 345.43 15.07 5.21 5.21 Total: -1.00 -34.82 345.43 -9.03 -43.85 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: -4.69 Total: -4.59 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -2.36 Total: -19.11 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.35 Total: -40.34 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -1.97 Total: -26.57 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: 26.15 SS G_CDS: -0.55 Total: 25.59 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.82 -9.03 -43.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169039774.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.167 kcal (2) G-P(sol) polarization free energy of solvation -34.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds