Wall clock time and date at job start Fri Apr 10 2020 22:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46895 * 111.00622 * 2 1 4 4 C 1.50702 * 109.46897 * 293.95402 * 3 2 1 5 5 H 1.07995 * 120.00068 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00107 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99585 * 0.02562 * 6 4 3 8 8 Si 1.86794 * 120.00064 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.47057 * 90.00126 * 8 6 4 10 10 H 1.48498 * 109.47170 * 210.00081 * 8 6 4 11 11 H 1.48497 * 109.47548 * 330.00513 * 8 6 4 12 12 C 1.46908 * 110.99873 * 123.95289 * 2 1 3 13 13 C 1.53001 * 109.47088 * 66.04603 * 12 2 1 14 14 S 1.81400 * 109.47228 * 180.02562 * 13 12 2 15 15 O 1.42099 * 110.54094 * 68.37321 * 14 13 12 16 16 O 1.42105 * 110.54073 * 291.62274 * 14 13 12 17 17 C 1.76199 * 104.44837 * 179.97438 * 14 13 12 18 18 C 1.38365 * 119.84663 * 89.99958 * 17 14 13 19 19 C 1.37947 * 120.14940 * 179.97438 * 18 17 14 20 20 C 1.39629 * 119.84839 * 359.97438 * 19 18 17 21 21 C 1.43205 * 120.15217 * 180.02562 * 20 19 18 22 22 N 9.27098 * 99.07570 * 236.12466 * 12 1 2 23 23 C 1.39630 * 119.69955 * 0.27680 * 20 19 18 24 24 C 1.37951 * 119.84578 * 359.46927 * 23 20 19 25 25 H 1.08996 * 109.47198 * 296.04934 * 1 2 3 26 26 H 1.09000 * 109.46573 * 56.04414 * 1 2 3 27 27 H 1.09001 * 109.47510 * 176.04749 * 1 2 3 28 28 H 1.09003 * 109.46832 * 53.94828 * 3 2 1 29 29 H 1.09000 * 109.47344 * 173.95355 * 3 2 1 30 30 H 0.97002 * 119.99571 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47091 * 306.04842 * 12 2 1 32 32 H 1.08996 * 109.47132 * 186.04504 * 12 2 1 33 33 H 1.08998 * 109.47462 * 59.99354 * 13 12 2 34 34 H 1.09009 * 109.46767 * 300.00159 * 13 12 2 35 35 H 1.07992 * 119.92688 * 0.02562 * 18 17 14 36 36 H 1.08003 * 120.07687 * 179.97438 * 19 18 17 37 37 H 1.07999 * 120.08232 * 179.69881 * 23 20 19 38 38 H 1.08002 * 119.92809 * 180.23515 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.6371 2.0470 -1.2985 5 1 1.0747 1.5112 -2.0488 6 6 2.0270 3.3494 -1.5286 7 7 2.7123 4.0017 -0.6150 8 14 1.5833 4.1866 -3.1383 9 1 0.2707 4.8667 -2.9972 10 1 2.6255 5.1881 -3.4791 11 1 1.5008 3.1709 -4.2184 12 6 1.9954 -0.7660 1.1377 13 6 1.6314 -2.2426 0.9704 14 16 2.2808 -3.1884 2.3756 15 8 1.5895 -2.8463 3.5690 16 8 3.7008 -3.2273 2.3369 17 6 1.7910 -4.8496 2.0514 18 6 2.6235 -5.6841 1.3268 19 6 2.2465 -6.9859 1.0698 20 6 1.0219 -7.4611 1.5431 21 6 0.6242 -8.8115 1.2806 22 7 0.3102 -9.8823 1.0679 23 6 0.1843 -6.6120 2.2692 24 6 0.5761 -5.3140 2.5235 25 1 -0.3633 0.4513 0.9232 26 1 -0.3632 0.5740 -0.8524 27 1 -0.3634 -1.0252 -0.0708 28 1 1.5612 1.9273 0.8309 29 1 3.0798 1.3442 0.1082 30 1 2.9869 4.9178 -0.7771 31 1 1.5610 -0.3873 2.0628 32 1 3.0797 -0.6612 1.1757 33 1 2.0656 -2.6214 0.0452 34 1 0.5470 -2.3475 0.9324 35 1 3.5710 -5.3157 0.9623 36 1 2.8971 -7.6361 0.5037 37 1 -0.7665 -6.9716 2.6341 38 1 -0.0691 -4.6572 3.0882 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169039774.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:03:02 Heat of formation + Delta-G solvation = -28.770445 kcal Electronic energy + Delta-G solvation = -21875.276874 eV Core-core repulsion = 18423.685007 eV Total energy + Delta-G solvation = -3451.591867 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.098 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.49241 -38.57198 -38.16980 -37.67744 -36.99468 -34.85183 -32.80960 -32.26781 -32.23632 -28.98050 -27.22463 -25.66685 -24.23434 -23.95315 -21.91622 -20.24145 -20.00522 -18.74178 -18.46099 -17.45852 -17.31030 -16.65049 -16.41498 -15.89841 -15.77406 -15.70554 -15.24953 -15.17845 -14.97315 -14.62201 -14.54184 -14.05418 -13.95716 -13.69903 -13.60890 -13.27772 -13.18605 -13.12102 -13.06729 -12.76191 -12.63107 -12.36968 -12.28272 -12.21391 -11.99751 -11.80635 -11.60985 -11.21969 -10.60059 -10.45106 -10.15035 -9.09027 -8.18637 -6.28585 -1.05595 -0.69651 0.21887 1.44258 1.45499 1.45519 1.56906 1.58376 1.91627 2.42162 2.55681 2.62488 2.86827 3.13708 3.14594 3.38926 3.64181 3.72804 3.81485 3.91876 4.18505 4.31316 4.41229 4.51682 4.52551 4.64400 4.78722 4.83745 4.90521 4.90983 4.97604 5.12813 5.13017 5.21032 5.33428 5.61342 5.66209 6.04379 6.25869 6.27362 6.56576 6.87307 7.41011 8.92633 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.024574 B = 0.002684 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.156335 B =10430.462487 C =10926.438507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.537 5.537 3 C 0.198 3.802 4 C -0.522 4.522 5 H 0.068 0.932 6 C -0.001 4.001 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.263 1.263 12 C 0.048 3.952 13 C -0.583 4.583 14 S 2.508 3.492 15 O -0.963 6.963 16 O -0.964 6.964 17 C -0.630 4.630 18 C -0.030 4.030 19 C -0.085 4.085 20 C 0.018 3.982 21 C 0.274 3.726 22 N -0.446 5.446 23 C -0.084 4.084 24 C -0.029 4.029 25 H 0.014 0.986 26 H 0.060 0.940 27 H 0.094 0.906 28 H -0.033 1.033 29 H 0.008 0.992 30 H 0.264 0.736 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.166 0.834 34 H 0.163 0.837 35 H 0.166 0.834 36 H 0.166 0.834 37 H 0.167 0.833 38 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.755 -21.510 4.530 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.262 5.262 3 C 0.071 3.929 4 C -0.560 4.560 5 H 0.086 0.914 6 C -0.199 4.199 7 N -0.576 5.576 8 Si 0.795 3.205 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.187 1.187 12 C -0.082 4.082 13 C -0.714 4.714 14 S 2.691 3.309 15 O -0.961 6.961 16 O -0.961 6.961 17 C -0.720 4.720 18 C -0.049 4.049 19 C -0.106 4.106 20 C 0.015 3.985 21 C -0.041 4.041 22 N -0.121 5.121 23 C -0.105 4.105 24 C -0.048 4.048 25 H 0.033 0.967 26 H 0.079 0.921 27 H 0.112 0.888 28 H -0.015 1.015 29 H 0.026 0.974 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.184 0.816 34 H 0.181 0.819 35 H 0.183 0.817 36 H 0.183 0.817 37 H 0.185 0.815 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.529 -22.968 4.531 23.845 hybrid contribution -0.462 1.240 -0.298 1.357 sum -4.991 -21.728 4.233 22.692 Atomic orbital electron populations 1.22425 0.87054 1.02370 1.00303 1.62068 1.08756 1.15160 1.40168 1.19514 0.94114 0.83792 0.95447 1.21464 1.34871 0.97397 1.02298 0.91374 1.25941 0.95067 0.98194 1.00699 1.70091 1.39317 1.11899 1.36268 0.85363 0.77819 0.78100 0.79204 1.19884 1.21060 1.18699 1.21858 1.01124 0.91450 0.93723 1.30275 1.15391 1.05696 1.20060 1.04912 0.74350 0.75169 0.76471 1.93539 1.75622 1.83583 1.43316 1.93547 1.28887 1.86470 1.87240 1.30600 1.05480 1.23477 1.12430 1.21189 0.98678 0.92892 0.92119 1.21557 0.94644 0.96038 0.98367 1.16371 0.96303 0.85491 1.00363 1.25766 0.92787 0.92650 0.92895 1.81326 1.08912 1.12785 1.09075 1.21568 1.00256 0.92592 0.96116 1.21195 0.93281 0.96374 0.93952 0.96705 0.92072 0.88754 1.01543 0.97416 0.92714 0.93989 0.90460 0.81633 0.81918 0.81697 0.81689 0.81537 0.81482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 9.14 127.69 1.17 2.05 16 2 N -0.54 -21.16 4.75 -927.05 -4.41 -25.56 16 3 C 0.20 10.17 4.72 85.56 0.40 10.57 16 4 C -0.52 -28.51 8.46 25.60 0.22 -28.30 16 5 H 0.07 3.59 7.12 -2.91 -0.02 3.57 16 6 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 7 N -0.94 -55.45 13.29 21.45 0.28 -55.16 16 8 Si 0.97 43.07 29.54 68.60 2.03 45.10 16 9 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 12 C 0.05 1.51 4.97 86.30 0.43 1.94 16 13 C -0.58 -11.22 5.90 71.98 0.42 -10.80 16 14 S 2.51 49.59 5.15 -56.49 -0.29 49.30 16 15 O -0.96 -24.35 17.11 -127.65 -2.18 -26.53 16 16 O -0.96 -25.27 17.11 -127.65 -2.18 -27.45 16 17 C -0.63 -8.67 5.66 22.33 0.13 -8.54 16 18 C -0.03 -0.35 9.45 22.23 0.21 -0.14 16 19 C -0.08 -0.78 9.76 22.54 0.22 -0.56 16 20 C 0.02 0.19 5.73 -21.36 -0.12 0.07 16 21 C 0.27 3.89 15.33 88.33 1.35 5.24 16 22 N -0.45 -8.79 18.54 19.00 0.35 -8.44 16 23 C -0.08 -0.73 9.76 22.54 0.22 -0.51 16 24 C -0.03 -0.32 9.45 22.23 0.21 -0.11 16 25 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.06 2.26 6.76 -2.39 -0.02 2.25 16 27 H 0.09 2.24 6.47 -2.39 -0.02 2.23 16 28 H -0.03 -1.85 8.12 -2.39 -0.02 -1.87 16 29 H 0.01 0.43 7.93 -2.39 -0.02 0.41 16 30 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 31 H 0.04 1.31 8.12 -2.39 -0.02 1.29 16 32 H 0.08 2.52 7.93 -2.39 -0.02 2.50 16 33 H 0.17 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.16 2.19 6.55 -2.39 -0.02 2.18 16 35 H 0.17 1.56 7.56 -2.91 -0.02 1.54 16 36 H 0.17 0.77 8.06 -2.91 -0.02 0.74 16 37 H 0.17 0.63 8.06 -2.91 -0.02 0.61 16 38 H 0.17 1.35 7.55 -2.91 -0.02 1.33 16 Total: -1.00 -76.89 345.43 -0.01 -76.90 By element: Atomic # 1 Polarization: -0.55 SS G_CDS: 1.08 Total: 0.53 kcal Atomic # 6 Polarization: -34.00 SS G_CDS: 5.32 Total: -28.68 kcal Atomic # 7 Polarization: -85.40 SS G_CDS: -3.77 Total: -89.17 kcal Atomic # 8 Polarization: -49.61 SS G_CDS: -4.37 Total: -53.98 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: 49.59 SS G_CDS: -0.29 Total: 49.30 kcal Total: -76.89 -0.01 -76.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169039774.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.128 kcal (2) G-P(sol) polarization free energy of solvation -76.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds