Wall clock time and date at job start Fri Apr 10 2020 22:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34756 * 117.00251 * 2 1 4 4 O 1.21521 * 119.99885 * 0.02562 * 3 2 1 5 5 C 1.47356 * 120.00355 * 180.02562 * 3 2 1 6 6 C 1.39764 * 120.20680 * 357.92051 * 5 3 2 7 7 C 1.37765 * 119.91205 * 180.27840 * 6 5 3 8 8 C 1.38591 * 120.34650 * 359.72366 * 7 6 5 9 9 C 1.38003 * 120.42347 * 0.02562 * 8 7 6 10 10 C 1.38875 * 120.07129 * 359.97438 * 9 8 7 11 11 N 1.39171 * 120.16805 * 180.02562 * 10 9 8 12 12 C 1.34781 * 119.99945 * 313.72470 * 11 10 9 13 13 S 1.71195 * 119.99921 * 354.34613 * 12 11 10 14 14 N 1.34777 * 119.99856 * 174.07280 * 12 11 10 15 15 C 1.46503 * 120.00066 * 180.27273 * 14 12 11 16 16 C 1.52995 * 109.47205 * 179.97438 * 15 14 12 17 17 C 1.50706 * 109.46993 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99789 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00036 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99886 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47302 * 60.00090 * 21 19 17 23 23 H 1.48497 * 109.47058 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.46792 * 300.00105 * 21 19 17 25 25 H 1.09006 * 109.46769 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46923 * 299.99477 * 1 2 3 27 27 H 1.08996 * 109.47677 * 59.99922 * 1 2 3 28 28 H 1.07997 * 120.04465 * 0.02562 * 6 5 3 29 29 H 1.07997 * 119.81880 * 179.74336 * 7 6 5 30 30 H 1.07997 * 119.78416 * 180.02562 * 8 7 6 31 31 H 1.07999 * 119.95946 * 180.02562 * 9 8 7 32 32 H 0.96999 * 120.00561 * 133.72812 * 11 10 9 33 33 H 0.96997 * 120.00186 * 0.27607 * 14 12 11 34 34 H 1.09000 * 109.47375 * 300.00558 * 15 14 12 35 35 H 1.09007 * 109.46814 * 59.99722 * 15 14 12 36 36 H 1.08997 * 109.47268 * 300.00232 * 16 15 14 37 37 H 1.08999 * 109.47059 * 60.00467 * 16 15 14 38 38 H 0.97004 * 119.99425 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2198 0.0005 5 6 3.5353 1.2778 -0.0006 6 6 4.3008 0.1092 0.0427 7 6 5.6761 0.1886 0.0477 8 6 6.3064 1.4221 0.0043 9 6 5.5645 2.5847 -0.0440 10 6 4.1770 2.5250 -0.0498 11 7 3.4268 3.6962 -0.0989 12 6 3.7381 4.7302 0.7075 13 16 4.9614 4.5538 1.8921 14 7 3.0901 5.9049 0.5777 15 6 3.4326 7.0307 1.4503 16 6 2.5568 8.2345 1.0972 17 6 2.9088 9.3924 1.9953 18 1 3.6802 9.2810 2.7428 19 6 2.2465 10.5943 1.8618 20 7 1.3074 10.7302 0.9512 21 14 2.6832 12.0299 2.9745 22 1 4.1127 12.3851 2.7862 23 1 1.8331 13.1982 2.6318 24 1 2.4506 11.6472 4.3904 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 3.8147 -0.8546 0.0763 29 1 6.2661 -0.7152 0.0854 30 1 7.3852 1.4738 0.0082 31 1 6.0634 3.5419 -0.0780 32 1 2.6798 3.7683 -0.7135 33 1 2.3970 6.0048 -0.0934 34 1 3.2628 6.7497 2.4897 35 1 4.4818 7.2919 1.3115 36 1 2.7272 8.5154 0.0579 37 1 1.5077 7.9736 1.2358 38 1 0.8418 11.5759 0.8571 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198997181.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:02:13 Heat of formation + Delta-G solvation = -39.322676 kcal Electronic energy + Delta-G solvation = -22139.940399 eV Core-core repulsion = 18687.890953 eV Total energy + Delta-G solvation = -3452.049446 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.098 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.10924 -39.65027 -38.10746 -36.72753 -35.45042 -33.14251 -31.83157 -30.61061 -29.16252 -27.96793 -25.25665 -24.34990 -23.69410 -22.39990 -21.38091 -21.15199 -18.55319 -18.25043 -17.79649 -17.11424 -16.63699 -16.47509 -15.65069 -15.39052 -15.20737 -14.67179 -14.53866 -14.32151 -14.08087 -13.75677 -13.68214 -13.06655 -12.58152 -12.44045 -12.34734 -12.13832 -11.65099 -11.37335 -11.12815 -11.11512 -10.95510 -10.78400 -10.70169 -10.47856 -9.76131 -9.57852 -9.41994 -9.29175 -8.55420 -8.43777 -7.55130 -6.97294 -6.15657 -4.19192 0.37999 1.02404 1.72583 2.18842 2.31073 2.38060 2.74452 3.29707 3.33219 3.36977 3.57279 3.74548 4.38207 4.38940 4.62729 4.79109 4.80620 4.89637 5.05828 5.12374 5.20337 5.21935 5.27561 5.64853 5.87228 5.95536 5.96389 6.07827 6.16349 6.19463 6.29907 6.58288 6.62392 6.71618 7.06311 7.40292 7.42916 7.45139 7.50298 7.82202 8.18109 8.86201 9.46362 10.95981 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.019588 B = 0.003084 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.092075 B = 9078.378220 C =10196.079780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.353 6.353 3 C 0.513 3.487 4 O -0.510 6.510 5 C -0.146 4.146 6 C -0.059 4.059 7 C -0.135 4.135 8 C -0.073 4.073 9 C -0.086 4.086 10 C 0.217 3.783 11 N -0.638 5.638 12 C 0.556 3.444 13 S -0.640 6.640 14 N -0.654 5.654 15 C 0.121 3.879 16 C 0.012 3.988 17 C -0.522 4.522 18 H 0.063 0.937 19 C 0.060 3.940 20 N -0.895 5.895 21 Si 0.900 3.100 22 H -0.274 1.274 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.103 0.897 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.139 0.861 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.149 0.851 32 H 0.413 0.587 33 H 0.399 0.601 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.839 -24.309 -7.236 25.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.270 6.270 3 C 0.359 3.641 4 O -0.399 6.399 5 C -0.151 4.151 6 C -0.078 4.078 7 C -0.154 4.154 8 C -0.093 4.093 9 C -0.108 4.108 10 C 0.121 3.879 11 N -0.268 5.268 12 C 0.196 3.804 13 S -0.512 6.512 14 N -0.277 5.277 15 C 0.000 4.000 16 C -0.026 4.026 17 C -0.561 4.561 18 H 0.081 0.919 19 C -0.142 4.142 20 N -0.533 5.533 21 Si 0.727 3.273 22 H -0.200 1.200 23 H -0.213 1.213 24 H -0.200 1.200 25 H 0.121 0.879 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.157 0.843 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.166 0.834 32 H 0.255 0.745 33 H 0.235 0.765 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.277 -23.771 -6.400 24.835 hybrid contribution -1.562 1.076 -0.536 1.971 sum 1.715 -22.695 -6.936 23.793 Atomic orbital electron populations 1.23302 0.75744 1.03813 1.02846 1.86535 1.23705 1.32391 1.84338 1.21087 0.88902 0.81551 0.72576 1.90791 1.66899 1.35869 1.46366 1.18930 0.88960 0.93833 1.13378 1.21187 0.93864 0.96924 0.95833 1.21135 0.94144 0.98229 1.01892 1.21252 1.00542 0.91494 0.96010 1.21307 0.91271 1.00622 0.97584 1.17246 0.90750 0.82913 0.96997 1.42155 1.33523 1.11639 1.39448 1.22373 0.89163 0.81649 0.87184 1.93295 1.31417 1.91185 1.35312 1.45782 1.35708 1.09874 1.36307 1.22361 1.01674 0.83018 0.92984 1.19389 0.94701 0.90563 0.97953 1.20939 1.20882 0.95757 1.18477 0.91864 1.24995 0.94778 0.98904 0.95534 1.69947 1.23928 1.25887 1.33572 0.86518 0.78523 0.81256 0.80968 1.19961 1.21250 1.19971 0.87884 0.91650 0.91752 0.84300 0.85030 0.84787 0.83363 0.74500 0.76500 0.90153 0.90016 0.95889 0.95902 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.57 101.05 1.07 1.34 16 2 O -0.35 -3.58 9.82 -40.64 -0.40 -3.98 16 3 C 0.51 6.35 7.89 34.44 0.27 6.62 16 4 O -0.51 -7.38 13.97 -19.28 -0.27 -7.65 16 5 C -0.15 -1.73 5.89 -104.82 -0.62 -2.35 16 6 C -0.06 -0.53 9.61 -39.18 -0.38 -0.91 16 7 C -0.14 -1.09 10.02 -39.62 -0.40 -1.48 16 8 C -0.07 -0.68 10.03 -39.54 -0.40 -1.08 16 9 C -0.09 -1.05 7.88 -39.43 -0.31 -1.37 16 10 C 0.22 2.86 5.78 -83.50 -0.48 2.38 16 11 N -0.64 -8.96 4.19 -11.22 -0.05 -9.01 16 12 C 0.56 9.43 7.73 -86.91 -0.67 8.76 16 13 S -0.64 -12.75 25.46 -107.50 -2.74 -15.49 16 14 N -0.65 -11.14 5.56 -62.03 -0.34 -11.48 16 15 C 0.12 2.47 5.07 -4.04 -0.02 2.45 16 16 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 17 C -0.52 -14.23 9.11 -34.44 -0.31 -14.55 16 18 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 21 Si 0.90 21.29 29.54 -169.99 -5.02 16.26 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 25 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.14 0.98 7.61 -52.49 -0.40 0.58 16 29 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 30 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 31 H 0.15 2.02 6.73 -52.49 -0.35 1.66 16 32 H 0.41 5.23 7.19 -40.82 -0.29 4.93 16 33 H 0.40 5.93 8.49 -40.82 -0.35 5.59 16 34 H 0.08 1.76 7.99 -51.93 -0.41 1.34 16 35 H 0.08 1.73 7.99 -51.93 -0.41 1.32 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 342.13 15.07 5.16 5.16 Total: -1.00 -33.15 342.13 -10.14 -43.29 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -4.72 Total: 6.55 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -2.49 Total: 1.52 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.34 Total: -45.66 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -0.67 Total: -11.63 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -12.75 SS G_CDS: -2.74 Total: -15.49 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.15 -10.14 -43.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198997181.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.966 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds