Wall clock time and date at job start Fri Apr 10 2020 22:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34756 * 117.00251 * 2 1 4 4 O 1.21521 * 119.99885 * 0.02562 * 3 2 1 5 5 C 1.47356 * 120.00355 * 180.02562 * 3 2 1 6 6 C 1.39764 * 120.20680 * 357.92051 * 5 3 2 7 7 C 1.37765 * 119.91205 * 180.27840 * 6 5 3 8 8 C 1.38591 * 120.34650 * 359.72366 * 7 6 5 9 9 C 1.38003 * 120.42347 * 0.02562 * 8 7 6 10 10 C 1.38875 * 120.07129 * 359.97438 * 9 8 7 11 11 N 1.39171 * 120.16805 * 180.02562 * 10 9 8 12 12 C 1.34781 * 119.99945 * 313.72470 * 11 10 9 13 13 S 1.71195 * 119.99921 * 354.34613 * 12 11 10 14 14 N 1.34777 * 119.99856 * 174.07280 * 12 11 10 15 15 C 1.46503 * 120.00066 * 180.27273 * 14 12 11 16 16 C 1.52995 * 109.47205 * 179.97438 * 15 14 12 17 17 C 1.50706 * 109.46993 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99789 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00036 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99886 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47302 * 60.00090 * 21 19 17 23 23 H 1.48497 * 109.47058 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.46792 * 300.00105 * 21 19 17 25 25 H 1.09006 * 109.46769 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46923 * 299.99477 * 1 2 3 27 27 H 1.08996 * 109.47677 * 59.99922 * 1 2 3 28 28 H 1.07997 * 120.04465 * 0.02562 * 6 5 3 29 29 H 1.07997 * 119.81880 * 179.74336 * 7 6 5 30 30 H 1.07997 * 119.78416 * 180.02562 * 8 7 6 31 31 H 1.07999 * 119.95946 * 180.02562 * 9 8 7 32 32 H 0.96999 * 120.00561 * 133.72812 * 11 10 9 33 33 H 0.96997 * 120.00186 * 0.27607 * 14 12 11 34 34 H 1.09000 * 109.47375 * 300.00558 * 15 14 12 35 35 H 1.09007 * 109.46814 * 59.99722 * 15 14 12 36 36 H 1.08997 * 109.47268 * 300.00232 * 16 15 14 37 37 H 1.08999 * 109.47059 * 60.00467 * 16 15 14 38 38 H 0.97004 * 119.99425 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2198 0.0005 5 6 3.5353 1.2778 -0.0006 6 6 4.3008 0.1092 0.0427 7 6 5.6761 0.1886 0.0477 8 6 6.3064 1.4221 0.0043 9 6 5.5645 2.5847 -0.0440 10 6 4.1770 2.5250 -0.0498 11 7 3.4268 3.6962 -0.0989 12 6 3.7381 4.7302 0.7075 13 16 4.9614 4.5538 1.8921 14 7 3.0901 5.9049 0.5777 15 6 3.4326 7.0307 1.4503 16 6 2.5568 8.2345 1.0972 17 6 2.9088 9.3924 1.9953 18 1 3.6802 9.2810 2.7428 19 6 2.2465 10.5943 1.8618 20 7 1.3074 10.7302 0.9512 21 14 2.6832 12.0299 2.9745 22 1 4.1127 12.3851 2.7862 23 1 1.8331 13.1982 2.6318 24 1 2.4506 11.6472 4.3904 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 3.8147 -0.8546 0.0763 29 1 6.2661 -0.7152 0.0854 30 1 7.3852 1.4738 0.0082 31 1 6.0634 3.5419 -0.0780 32 1 2.6798 3.7683 -0.7135 33 1 2.3970 6.0048 -0.0934 34 1 3.2628 6.7497 2.4897 35 1 4.4818 7.2919 1.3115 36 1 2.7272 8.5154 0.0579 37 1 1.5077 7.9736 1.2358 38 1 0.8418 11.5759 0.8571 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198997181.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:02:11 Heat of formation + Delta-G solvation = -58.801692 kcal Electronic energy + Delta-G solvation = -22140.785073 eV Core-core repulsion = 18687.890953 eV Total energy + Delta-G solvation = -3452.894120 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.098 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -42.04844 -40.66935 -39.28320 -37.65292 -36.78250 -35.07807 -32.67863 -32.16257 -30.41023 -28.67401 -27.01806 -25.31863 -24.99923 -23.69608 -22.76703 -22.20280 -19.73613 -19.38446 -18.80747 -18.48863 -17.95700 -17.47240 -17.00479 -16.59548 -16.55324 -16.09324 -15.86910 -15.72047 -15.07070 -14.65818 -14.49396 -14.33099 -14.23925 -13.58159 -13.36153 -13.24020 -12.93036 -12.84780 -12.59249 -12.46046 -12.43262 -12.24644 -11.89220 -11.71872 -11.67321 -11.48519 -10.84992 -10.58693 -10.14426 -9.61534 -9.05343 -8.45549 -8.27874 -6.38422 -0.54199 0.04630 0.51817 0.81902 1.38945 1.41814 1.43846 1.44486 1.52557 1.58786 2.34830 2.47806 2.75648 3.07853 3.58107 3.82902 4.05364 4.17275 4.24867 4.28917 4.29767 4.39445 4.39677 4.42595 4.67200 4.76312 4.83227 4.94572 5.06787 5.14657 5.30171 5.31898 5.46306 5.48078 5.52247 5.68830 5.75558 5.94816 6.08557 6.22516 6.53272 6.74613 7.31326 8.83955 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.019588 B = 0.003084 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.092075 B = 9078.378220 C =10196.079780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.348 6.348 3 C 0.511 3.489 4 O -0.540 6.540 5 C -0.157 4.157 6 C -0.051 4.051 7 C -0.118 4.118 8 C -0.068 4.068 9 C -0.101 4.101 10 C 0.180 3.820 11 N -0.618 5.618 12 C 0.573 3.427 13 S -0.698 6.698 14 N -0.653 5.653 15 C 0.148 3.852 16 C 0.022 3.978 17 C -0.545 4.545 18 H 0.064 0.936 19 C 0.008 3.992 20 N -0.928 5.928 21 Si 0.965 3.035 22 H -0.266 1.266 23 H -0.281 1.281 24 H -0.269 1.269 25 H 0.139 0.861 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.166 0.834 29 H 0.173 0.827 30 H 0.160 0.840 31 H 0.128 0.872 32 H 0.420 0.580 33 H 0.410 0.590 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.011 0.989 37 H 0.006 0.994 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.557 -26.643 -7.366 27.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.264 6.264 3 C 0.358 3.642 4 O -0.433 6.433 5 C -0.161 4.161 6 C -0.070 4.070 7 C -0.137 4.137 8 C -0.088 4.088 9 C -0.123 4.123 10 C 0.085 3.915 11 N -0.247 5.247 12 C 0.211 3.789 13 S -0.571 6.571 14 N -0.277 5.277 15 C 0.026 3.974 16 C -0.016 4.016 17 C -0.583 4.583 18 H 0.082 0.918 19 C -0.190 4.190 20 N -0.567 5.567 21 Si 0.790 3.210 22 H -0.191 1.191 23 H -0.207 1.207 24 H -0.193 1.193 25 H 0.157 0.843 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.183 0.817 29 H 0.191 0.809 30 H 0.177 0.823 31 H 0.146 0.854 32 H 0.263 0.737 33 H 0.249 0.751 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.030 0.970 37 H 0.025 0.975 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.994 -26.192 -6.571 27.298 hybrid contribution -1.801 1.570 -0.590 2.461 sum 2.194 -24.622 -7.161 25.736 Atomic orbital electron populations 1.23594 0.74228 1.06062 1.02432 1.86524 1.25142 1.31020 1.83718 1.21298 0.89245 0.81770 0.71873 1.90770 1.67588 1.36929 1.47980 1.19077 0.89004 0.94170 1.13885 1.21580 0.94396 0.96912 0.94137 1.21606 0.93941 0.99077 0.99033 1.21622 1.01804 0.91008 0.94323 1.21270 0.91103 1.01085 0.98829 1.17534 0.91225 0.82815 0.99900 1.42106 1.33196 1.11266 1.38113 1.21985 0.88138 0.82048 0.86752 1.93332 1.34042 1.91939 1.37805 1.45360 1.36465 1.09384 1.36512 1.21748 1.00295 0.82741 0.92635 1.19180 0.94260 0.91374 0.96758 1.21368 1.20964 0.97014 1.18962 0.91824 1.25863 0.94602 1.01667 0.96919 1.70053 1.24902 1.26700 1.35061 0.85485 0.78568 0.77883 0.79084 1.19120 1.20673 1.19349 0.84294 0.92598 0.91709 0.81694 0.80945 0.82257 0.85406 0.73686 0.75126 0.91497 0.90705 0.97046 0.97526 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.57 113.37 1.20 1.59 16 2 O -0.35 -6.42 9.82 -56.66 -0.56 -6.98 16 3 C 0.51 12.21 7.89 70.22 0.55 12.77 16 4 O -0.54 -15.71 13.97 19.77 0.28 -15.43 16 5 C -0.16 -3.51 5.89 -20.00 -0.12 -3.63 16 6 C -0.05 -0.77 9.61 22.53 0.22 -0.55 16 7 C -0.12 -1.43 10.02 22.24 0.22 -1.20 16 8 C -0.07 -1.10 10.03 22.30 0.22 -0.88 16 9 C -0.10 -2.44 7.88 22.37 0.18 -2.27 16 10 C 0.18 4.70 5.78 38.64 0.22 4.93 16 11 N -0.62 -17.70 4.19 -189.42 -0.79 -18.49 16 12 C 0.57 19.93 7.73 179.05 1.38 21.32 16 13 S -0.70 -28.56 25.46 -56.49 -1.44 -30.00 16 14 N -0.65 -22.86 5.56 -350.16 -1.95 -24.80 16 15 C 0.15 6.27 5.07 86.38 0.44 6.71 16 16 C 0.02 1.09 5.09 29.85 0.15 1.24 16 17 C -0.54 -30.20 9.11 25.60 0.23 -29.96 16 18 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 19 C 0.01 0.47 5.46 84.65 0.46 0.93 16 20 N -0.93 -54.37 13.29 21.45 0.28 -54.09 16 21 Si 0.97 43.70 29.54 68.60 2.03 45.72 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 H 0.14 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.17 1.61 7.61 -2.91 -0.02 1.59 16 29 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16 30 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 31 H 0.13 3.59 6.73 -2.91 -0.02 3.57 16 32 H 0.42 10.85 7.19 -92.71 -0.67 10.18 16 33 H 0.41 12.53 8.49 -92.71 -0.79 11.75 16 34 H 0.07 3.02 7.99 -2.39 -0.02 3.00 16 35 H 0.07 3.27 7.99 -2.38 -0.02 3.25 16 36 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.27 14.72 8.31 -92.70 -0.77 13.95 16 Total: -1.00 -73.17 342.13 2.87 -70.30 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -0.35 Total: 22.77 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 5.37 Total: 11.00 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -2.46 Total: -97.38 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.28 Total: -22.41 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -28.56 SS G_CDS: -1.44 Total: -30.00 kcal Total: -73.17 2.87 -70.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198997181.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.503 kcal (2) G-P(sol) polarization free energy of solvation -73.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds