Wall clock time and date at job start Fri Apr 10 2020 22:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45201 * 109.47063 * 2 1 4 4 C 1.34744 * 117.00194 * 179.97438 * 3 2 1 5 5 O 1.21512 * 119.99893 * 359.97438 * 4 3 2 6 6 C 1.47434 * 120.00186 * 179.97438 * 4 3 2 7 7 C 1.39823 * 120.07445 * 0.27185 * 6 4 3 8 8 C 1.37623 * 119.92027 * 180.23139 * 7 6 4 9 9 C 1.39184 * 120.07911 * 359.49391 * 8 7 6 10 10 N 1.39291 * 119.92839 * 180.27400 * 9 8 7 11 11 C 1.34779 * 119.99971 * 134.79023 * 10 9 8 12 12 S 1.71198 * 120.00032 * 4.12412 * 11 10 9 13 13 N 1.34778 * 119.99811 * 184.12109 * 11 10 9 14 14 C 1.46499 * 120.00332 * 0.02562 * 13 11 10 15 15 C 1.37039 * 119.99563 * 180.02562 * 13 11 10 16 16 H 1.07995 * 120.00652 * 24.85402 * 15 13 11 17 17 C 1.38890 * 119.99568 * 204.84601 * 15 13 11 18 18 N 1.31473 * 120.00464 * 9.06925 * 17 15 13 19 19 Si 1.86804 * 119.99782 * 189.06582 * 17 15 13 20 20 H 1.48501 * 109.46987 * 90.00414 * 19 17 15 21 21 H 1.48503 * 109.46938 * 210.00439 * 19 17 15 22 22 H 1.48505 * 109.47101 * 330.00103 * 19 17 15 23 23 C 1.39189 * 120.15247 * 0.25821 * 9 8 7 24 24 C 1.37623 * 120.07877 * 359.97438 * 23 9 8 25 25 H 1.08991 * 109.47569 * 300.00303 * 1 2 3 26 26 H 1.09003 * 109.46969 * 60.00487 * 1 2 3 27 27 H 1.09004 * 109.46717 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47569 * 239.99697 * 2 1 3 29 29 H 1.09003 * 109.46969 * 119.99513 * 2 1 3 30 30 H 1.07996 * 120.04274 * 359.97438 * 7 6 4 31 31 H 1.08002 * 119.96099 * 179.77690 * 8 7 6 32 32 H 0.97000 * 120.00080 * 314.79632 * 10 9 8 33 33 H 1.09004 * 109.46827 * 91.68290 * 14 13 11 34 34 H 1.09000 * 109.47443 * 211.68872 * 14 13 11 35 35 H 1.09002 * 109.46778 * 331.68814 * 14 13 11 36 36 H 0.97001 * 120.00484 * 179.97438 * 18 17 15 37 37 H 1.07998 * 119.96387 * 180.02562 * 23 9 8 38 38 H 1.07996 * 120.04356 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5456 0.0005 5 8 4.0901 0.5820 0.0015 6 6 3.9134 2.9080 0.0000 7 6 3.0631 4.0179 0.0047 8 6 3.5925 5.2883 -0.0007 9 6 4.9725 5.4689 -0.0001 10 7 5.5050 6.7560 0.0003 11 6 6.5221 7.0643 0.8291 12 16 7.2296 5.8486 1.8050 13 7 6.9822 8.3297 0.8896 14 6 6.3764 9.3701 0.0549 15 6 8.0167 8.6430 1.7320 16 1 8.7170 7.8787 2.0348 17 6 8.1647 9.9436 2.1961 18 7 7.2204 10.8316 1.9762 19 14 9.7054 10.4314 3.1330 20 1 10.7319 10.9199 2.1775 21 1 9.3763 11.5093 4.1000 22 1 10.2328 9.2526 3.8663 23 6 5.8219 4.3662 0.0005 24 6 5.2994 3.0930 0.0010 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.9921 3.8786 0.0083 31 1 2.9362 6.1461 -0.0007 32 1 5.1437 7.4305 -0.5959 33 1 5.5729 9.8572 0.6075 34 1 7.1330 10.1079 -0.2123 35 1 5.9725 8.9192 -0.8516 36 1 7.3236 11.7399 2.3006 37 1 6.8923 4.5099 0.0014 38 1 5.9590 2.2379 0.0019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199032950.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:02:20 Heat of formation + Delta-G solvation = -30.578726 kcal Electronic energy + Delta-G solvation = -22089.590021 eV Core-core repulsion = 18637.919741 eV Total energy + Delta-G solvation = -3451.670280 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.098 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.41477 -39.42923 -37.95653 -36.47740 -35.11588 -32.46671 -31.86557 -30.70846 -29.51998 -27.60023 -25.85347 -24.15284 -22.90858 -22.48451 -21.07703 -20.54991 -18.77569 -17.86598 -17.45128 -17.00831 -16.51009 -16.38538 -15.43448 -14.80737 -14.59856 -14.21660 -14.18266 -13.98269 -13.64899 -13.44260 -13.13853 -12.97004 -12.66605 -12.25322 -12.09036 -11.92329 -11.83222 -11.71903 -11.46312 -11.27057 -11.02075 -10.74273 -10.59968 -10.58962 -10.36854 -9.97728 -9.73174 -9.01105 -8.70082 -7.94915 -7.05311 -6.72644 -5.91087 -4.47648 0.93730 1.79937 2.37485 2.71449 2.81287 2.95848 3.01644 3.10609 3.23819 3.70789 3.89151 4.16018 4.43104 4.57248 4.74812 4.76469 4.87828 5.09969 5.15428 5.26679 5.49032 5.54675 5.58264 5.66185 5.75720 5.81453 5.95039 6.14453 6.30240 6.37721 6.51214 6.52027 6.71814 6.74692 6.98455 7.04858 7.07556 7.48477 7.87692 7.90211 8.09077 8.61773 8.78885 9.98562 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.035422 B = 0.002814 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.286614 B = 9948.044870 C =10364.014063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.357 6.357 4 C 0.515 3.485 5 O -0.516 6.516 6 C -0.154 4.154 7 C -0.056 4.056 8 C -0.163 4.163 9 C 0.212 3.788 10 N -0.661 5.661 11 C 0.434 3.566 12 S -0.732 6.732 13 N -0.343 5.343 14 C 0.083 3.917 15 C -0.285 4.285 16 H 0.138 0.862 17 C 0.040 3.960 18 N -0.853 5.853 19 Si 0.949 3.051 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.256 1.256 23 C -0.089 4.089 24 C -0.049 4.049 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.132 0.868 31 H 0.125 0.875 32 H 0.396 0.604 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.036 0.964 36 H 0.282 0.718 37 H 0.160 0.840 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.897 -6.851 -7.526 14.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.274 6.274 4 C 0.361 3.639 5 O -0.406 6.406 6 C -0.157 4.157 7 C -0.076 4.076 8 C -0.184 4.184 9 C 0.114 3.886 10 N -0.293 5.293 11 C 0.076 3.924 12 S -0.597 6.597 13 N -0.024 5.024 14 C -0.063 4.063 15 C -0.418 4.418 16 H 0.155 0.845 17 C -0.171 4.171 18 N -0.486 5.486 19 Si 0.773 3.227 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.180 1.180 23 C -0.113 4.113 24 C -0.070 4.070 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.150 0.850 31 H 0.143 0.857 32 H 0.235 0.765 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.055 0.945 36 H 0.093 0.907 37 H 0.177 0.823 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.160 -7.425 -6.776 14.292 hybrid contribution -0.078 1.344 -0.257 1.370 sum -10.238 -6.081 -7.034 13.830 Atomic orbital electron populations 1.21801 0.92771 1.02796 1.03533 1.22977 0.95170 0.80507 1.02538 1.86557 1.24379 1.31896 1.84601 1.21273 0.80122 0.90207 0.72262 1.90810 1.60334 1.42684 1.46762 1.18942 0.94148 0.89182 1.13383 1.20961 0.99377 0.90880 0.96375 1.20821 0.93254 0.97539 1.06830 1.17651 0.91490 0.84041 0.95436 1.41666 1.35229 1.11139 1.41297 1.21312 0.88816 0.89730 0.92543 1.92460 1.71892 1.39510 1.55877 1.43037 1.25457 1.03737 1.30152 1.22042 1.00882 0.91295 0.92092 1.20642 1.02312 0.96293 1.22543 0.84453 1.25790 0.99506 0.95311 0.96451 1.69988 1.31604 1.05200 1.41759 0.85522 0.79127 0.79085 0.79014 1.19529 1.20239 1.17970 1.21692 1.02547 0.90074 0.96962 1.20996 0.92594 0.97554 0.95902 0.91443 0.91507 0.90396 0.91354 0.91296 0.84996 0.85668 0.76530 0.90028 0.89231 0.94516 0.90726 0.82276 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.29 37.16 0.38 -0.69 16 2 C 0.06 0.63 6.20 37.16 0.23 0.86 16 3 O -0.36 -4.67 9.46 -40.61 -0.38 -5.06 16 4 C 0.51 8.00 7.89 34.48 0.27 8.27 16 5 O -0.52 -9.10 16.13 -19.28 -0.31 -9.42 16 6 C -0.15 -2.43 5.88 -104.96 -0.62 -3.05 16 7 C -0.06 -0.79 9.60 -39.21 -0.38 -1.17 16 8 C -0.16 -2.40 9.95 -39.45 -0.39 -2.80 16 9 C 0.21 3.72 5.93 -83.77 -0.50 3.23 16 10 N -0.66 -12.06 5.16 -11.40 -0.06 -12.12 16 11 C 0.43 9.84 7.52 -86.92 -0.65 9.19 16 12 S -0.73 -19.11 24.35 -107.50 -2.62 -21.73 16 13 N -0.34 -7.77 3.01 -124.14 -0.37 -8.14 16 14 C 0.08 1.54 8.52 59.85 0.51 2.05 16 15 C -0.29 -7.02 8.98 -14.98 -0.13 -7.15 16 16 H 0.14 3.64 6.66 -52.49 -0.35 3.29 16 17 C 0.04 0.91 5.15 -17.46 -0.09 0.82 16 18 N -0.85 -19.44 10.63 55.49 0.59 -18.85 16 19 Si 0.95 18.44 29.56 -169.99 -5.03 13.41 16 20 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 21 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 23 C -0.09 -1.64 7.83 -39.45 -0.31 -1.95 16 24 C -0.05 -0.84 9.58 -39.21 -0.38 -1.21 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.13 1.53 7.60 -52.49 -0.40 1.13 16 31 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.40 5.96 6.49 -40.82 -0.26 5.69 16 33 H 0.08 1.58 7.52 -51.93 -0.39 1.19 16 34 H 0.09 1.73 7.13 -51.93 -0.37 1.36 16 35 H 0.04 0.54 6.22 -51.93 -0.32 0.22 16 36 H 0.28 6.03 8.31 -40.82 -0.34 5.69 16 37 H 0.16 3.29 6.07 -43.36 -0.26 3.03 16 38 H 0.13 2.19 7.64 -52.49 -0.40 1.78 16 LS Contribution 335.34 15.07 5.05 5.05 Total: -1.00 -30.07 335.34 -9.61 -39.68 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -4.43 Total: 10.75 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -2.05 Total: 6.41 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.16 Total: -39.10 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: -0.70 Total: -14.47 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Atomic # 16 Polarization: -19.11 SS G_CDS: -2.62 Total: -21.73 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.07 -9.61 -39.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199032950.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.100 kcal (2) G-P(sol) polarization free energy of solvation -30.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds