Wall clock time and date at job start Fri Apr 10 2020 22:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45201 * 109.47063 * 2 1 4 4 C 1.34744 * 117.00194 * 179.97438 * 3 2 1 5 5 O 1.21512 * 119.99893 * 359.97438 * 4 3 2 6 6 C 1.47434 * 120.00186 * 179.97438 * 4 3 2 7 7 C 1.39823 * 120.07445 * 0.27185 * 6 4 3 8 8 C 1.37623 * 119.92027 * 180.23139 * 7 6 4 9 9 C 1.39184 * 120.07911 * 359.49391 * 8 7 6 10 10 N 1.39291 * 119.92839 * 180.27400 * 9 8 7 11 11 C 1.34779 * 119.99971 * 134.79023 * 10 9 8 12 12 S 1.71198 * 120.00032 * 4.12412 * 11 10 9 13 13 N 1.34778 * 119.99811 * 184.12109 * 11 10 9 14 14 C 1.46499 * 120.00332 * 0.02562 * 13 11 10 15 15 C 1.37039 * 119.99563 * 180.02562 * 13 11 10 16 16 H 1.07995 * 120.00652 * 24.85402 * 15 13 11 17 17 C 1.38890 * 119.99568 * 204.84601 * 15 13 11 18 18 N 1.31473 * 120.00464 * 9.06925 * 17 15 13 19 19 Si 1.86804 * 119.99782 * 189.06582 * 17 15 13 20 20 H 1.48501 * 109.46987 * 90.00414 * 19 17 15 21 21 H 1.48503 * 109.46938 * 210.00439 * 19 17 15 22 22 H 1.48505 * 109.47101 * 330.00103 * 19 17 15 23 23 C 1.39189 * 120.15247 * 0.25821 * 9 8 7 24 24 C 1.37623 * 120.07877 * 359.97438 * 23 9 8 25 25 H 1.08991 * 109.47569 * 300.00303 * 1 2 3 26 26 H 1.09003 * 109.46969 * 60.00487 * 1 2 3 27 27 H 1.09004 * 109.46717 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47569 * 239.99697 * 2 1 3 29 29 H 1.09003 * 109.46969 * 119.99513 * 2 1 3 30 30 H 1.07996 * 120.04274 * 359.97438 * 7 6 4 31 31 H 1.08002 * 119.96099 * 179.77690 * 8 7 6 32 32 H 0.97000 * 120.00080 * 314.79632 * 10 9 8 33 33 H 1.09004 * 109.46827 * 91.68290 * 14 13 11 34 34 H 1.09000 * 109.47443 * 211.68872 * 14 13 11 35 35 H 1.09002 * 109.46778 * 331.68814 * 14 13 11 36 36 H 0.97001 * 120.00484 * 179.97438 * 18 17 15 37 37 H 1.07998 * 119.96387 * 180.02562 * 23 9 8 38 38 H 1.07996 * 120.04356 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3499 1.5456 0.0005 5 8 4.0901 0.5820 0.0015 6 6 3.9134 2.9080 0.0000 7 6 3.0631 4.0179 0.0047 8 6 3.5925 5.2883 -0.0007 9 6 4.9725 5.4689 -0.0001 10 7 5.5050 6.7560 0.0003 11 6 6.5221 7.0643 0.8291 12 16 7.2296 5.8486 1.8050 13 7 6.9822 8.3297 0.8896 14 6 6.3764 9.3701 0.0549 15 6 8.0167 8.6430 1.7320 16 1 8.7170 7.8787 2.0348 17 6 8.1647 9.9436 2.1961 18 7 7.2204 10.8316 1.9762 19 14 9.7054 10.4314 3.1330 20 1 10.7319 10.9199 2.1775 21 1 9.3763 11.5093 4.1000 22 1 10.2328 9.2526 3.8663 23 6 5.8219 4.3662 0.0005 24 6 5.2994 3.0930 0.0010 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.9921 3.8786 0.0083 31 1 2.9362 6.1461 -0.0007 32 1 5.1437 7.4305 -0.5959 33 1 5.5729 9.8572 0.6075 34 1 7.1330 10.1079 -0.2123 35 1 5.9725 8.9192 -0.8516 36 1 7.3236 11.7399 2.3006 37 1 6.8923 4.5099 0.0014 38 1 5.9590 2.2379 0.0019 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199032950.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:02:19 Heat of formation + Delta-G solvation = -45.906372 kcal Electronic energy + Delta-G solvation = -22090.254678 eV Core-core repulsion = 18637.919741 eV Total energy + Delta-G solvation = -3452.334937 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.098 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.63501 -40.88052 -39.45726 -37.64597 -36.63333 -34.15225 -32.70050 -31.98156 -30.85470 -29.20704 -27.51238 -25.33277 -24.24678 -23.50942 -22.53562 -21.87258 -20.41983 -19.28258 -18.90287 -18.36102 -17.71668 -17.53680 -17.15636 -16.35771 -16.06375 -15.59967 -15.41132 -15.32710 -15.14127 -14.64164 -14.37032 -14.04291 -13.67039 -13.54724 -13.48555 -13.38738 -13.03352 -12.88150 -12.77123 -12.72123 -12.49470 -12.15850 -12.09103 -11.89662 -11.61102 -11.49939 -11.33752 -10.60236 -9.99628 -9.43459 -8.82352 -8.65175 -7.87958 -6.32425 -0.38482 0.53760 0.69698 1.32539 1.44185 1.45635 1.54919 1.60682 1.66072 2.05689 2.32537 2.73231 2.83310 2.89382 3.71421 3.94986 4.05218 4.06769 4.12882 4.13977 4.38393 4.38880 4.45437 4.62231 4.66306 4.84083 4.96115 4.97592 5.06133 5.13619 5.21050 5.23534 5.30224 5.39803 5.45819 5.53993 5.65494 5.99374 6.30364 6.36117 6.71912 6.88738 6.99283 8.23195 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.035422 B = 0.002814 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.286614 B = 9948.044870 C =10364.014063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 O -0.351 6.351 4 C 0.518 3.482 5 O -0.544 6.544 6 C -0.157 4.157 7 C -0.041 4.041 8 C -0.146 4.146 9 C 0.188 3.812 10 N -0.643 5.643 11 C 0.446 3.554 12 S -0.811 6.811 13 N -0.347 5.347 14 C 0.087 3.913 15 C -0.319 4.319 16 H 0.108 0.892 17 C 0.017 3.983 18 N -0.859 5.859 19 Si 1.004 2.996 20 H -0.256 1.256 21 H -0.266 1.266 22 H -0.275 1.275 23 C -0.103 4.103 24 C -0.057 4.057 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.100 0.900 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.168 0.832 31 H 0.160 0.840 32 H 0.415 0.585 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.291 0.709 37 H 0.129 0.871 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.705 -5.916 -8.390 17.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 O -0.268 6.268 4 C 0.366 3.634 5 O -0.436 6.436 6 C -0.159 4.159 7 C -0.060 4.060 8 C -0.168 4.168 9 C 0.092 3.908 10 N -0.276 5.276 11 C 0.085 3.915 12 S -0.679 6.679 13 N -0.028 5.028 14 C -0.057 4.057 15 C -0.452 4.452 16 H 0.126 0.874 17 C -0.192 4.192 18 N -0.491 5.491 19 Si 0.825 3.175 20 H -0.181 1.181 21 H -0.191 1.191 22 H -0.200 1.200 23 C -0.127 4.127 24 C -0.078 4.078 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.119 0.881 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.185 0.815 31 H 0.177 0.823 32 H 0.257 0.743 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.146 0.854 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.042 -6.476 -7.700 16.471 hybrid contribution 0.648 0.957 -0.053 1.157 sum -12.394 -5.519 -7.753 15.626 Atomic orbital electron populations 1.21824 0.89984 1.04447 1.03884 1.23344 0.97275 0.78965 1.02575 1.86542 1.22556 1.33845 1.83869 1.21208 0.80895 0.89661 0.71654 1.90801 1.61221 1.43475 1.48080 1.19081 0.93724 0.90308 1.12803 1.21324 1.00791 0.89770 0.94103 1.21128 0.91982 0.99022 1.04622 1.17899 0.92730 0.83227 0.96985 1.41419 1.33732 1.11981 1.40514 1.20903 0.89217 0.88838 0.92575 1.92583 1.74319 1.41974 1.59020 1.43200 1.25165 1.04271 1.30204 1.22118 1.00252 0.90498 0.92868 1.20450 1.03374 0.96524 1.24837 0.87414 1.26386 1.01651 0.94624 0.96534 1.70001 1.32094 1.05553 1.41479 0.84749 0.76531 0.78105 0.78113 1.18070 1.19070 1.19970 1.21409 1.01348 0.91318 0.98609 1.20943 0.93629 0.96833 0.96406 0.91270 0.90912 0.88117 0.91141 0.91614 0.81501 0.82278 0.74329 0.90395 0.89931 0.90414 0.89899 0.85360 0.85558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 10.29 71.98 0.74 -0.85 16 2 C 0.05 0.95 6.20 71.98 0.45 1.39 16 3 O -0.35 -8.40 9.46 -56.55 -0.53 -8.93 16 4 C 0.52 15.53 7.89 70.24 0.55 16.08 16 5 O -0.54 -19.16 16.13 19.80 0.32 -18.84 16 6 C -0.16 -4.75 5.88 -20.08 -0.12 -4.87 16 7 C -0.04 -1.01 9.60 22.51 0.22 -0.79 16 8 C -0.15 -3.85 9.95 22.35 0.22 -3.63 16 9 C 0.19 6.44 5.93 38.41 0.23 6.66 16 10 N -0.64 -22.68 5.16 -189.98 -0.98 -23.66 16 11 C 0.45 20.40 7.52 179.05 1.35 21.75 16 12 S -0.81 -44.31 24.35 -56.49 -1.38 -45.68 16 13 N -0.35 -15.78 3.01 -546.67 -1.65 -17.42 16 14 C 0.09 3.11 8.52 127.77 1.09 4.20 16 15 C -0.32 -16.05 8.98 84.04 0.75 -15.29 16 16 H 0.11 6.01 6.66 -2.91 -0.02 5.99 16 17 C 0.02 0.79 5.15 84.90 0.44 1.23 16 18 N -0.86 -38.17 10.63 21.66 0.23 -37.94 16 19 Si 1.00 37.63 29.56 68.60 2.03 39.66 16 20 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 21 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 22 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 23 C -0.10 -3.93 7.83 22.35 0.18 -3.76 16 24 C -0.06 -1.99 9.58 22.51 0.22 -1.78 16 25 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.17 3.04 7.60 -2.91 -0.02 3.02 16 31 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 32 H 0.41 11.35 6.49 -92.71 -0.60 10.75 16 33 H 0.08 2.87 7.52 -2.39 -0.02 2.85 16 34 H 0.08 3.08 7.13 -2.39 -0.02 3.06 16 35 H 0.08 2.08 6.22 -2.39 -0.01 2.07 16 36 H 0.29 11.92 8.31 -92.71 -0.77 11.15 16 37 H 0.13 5.70 6.07 -8.71 -0.05 5.64 16 38 H 0.13 4.43 7.64 -2.91 -0.02 4.41 16 Total: -1.00 -68.05 335.34 4.81 -63.24 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 0.46 Total: 29.25 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: 6.31 Total: 20.34 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -2.40 Total: -79.03 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.22 Total: -27.77 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 2.03 Total: 39.66 kcal Atomic # 16 Polarization: -44.31 SS G_CDS: -1.38 Total: -45.68 kcal Total: -68.05 4.81 -63.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199032950.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.330 kcal (2) G-P(sol) polarization free energy of solvation -68.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds