Wall clock time and date at job start Fri Apr 10 2020 22:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34239 * 117.00032 * 2 1 4 4 O 1.20826 * 119.99791 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99819 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.46834 * 180.02562 * 5 3 2 7 7 N 1.46506 * 109.47039 * 179.97438 * 6 5 3 8 8 C 1.34777 * 120.00113 * 180.02562 * 7 6 5 9 9 S 1.71202 * 119.99904 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00188 * 180.02562 * 8 7 6 11 11 C 1.39140 * 119.99868 * 185.52011 * 10 8 7 12 12 C 1.39506 * 119.83808 * 42.14833 * 11 10 8 13 13 C 1.36359 * 120.16809 * 180.29823 * 12 11 10 14 14 C 1.40879 * 119.82778 * 359.44981 * 13 12 11 15 15 C 1.41145 * 120.16162 * 180.25390 * 14 13 12 16 16 H 1.07993 * 120.00091 * 205.11841 * 15 14 13 17 17 C 1.39890 * 119.99636 * 25.11431 * 15 14 13 18 18 N 1.30876 * 120.00177 * 17.73033 * 17 15 14 19 19 Si 1.86802 * 119.99504 * 197.72622 * 17 15 14 20 20 H 1.48499 * 109.47227 * 94.74270 * 19 17 15 21 21 H 1.48504 * 109.46852 * 214.74209 * 19 17 15 22 22 H 1.48502 * 109.47138 * 334.74124 * 19 17 15 23 23 C 1.40882 * 119.67811 * 0.54569 * 14 13 12 24 24 C 1.36352 * 119.82913 * 359.73032 * 23 14 13 25 25 H 1.08992 * 109.47225 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46752 * 300.00129 * 1 2 3 27 27 H 1.09001 * 109.47533 * 59.99525 * 1 2 3 28 28 H 1.08992 * 109.47291 * 60.00031 * 5 3 2 29 29 H 1.09002 * 109.46659 * 299.99903 * 5 3 2 30 30 H 1.09006 * 109.47273 * 60.00083 * 6 5 3 31 31 H 1.08993 * 109.47447 * 299.99554 * 6 5 3 32 32 H 0.96998 * 119.99959 * 359.97438 * 7 6 5 33 33 H 0.97003 * 120.00098 * 5.51972 * 10 8 7 34 34 H 1.08000 * 119.91647 * 0.02562 * 12 11 10 35 35 H 1.07997 * 120.08756 * 179.71929 * 13 12 11 36 36 H 0.96995 * 120.00288 * 179.97438 * 18 17 15 37 37 H 1.07998 * 120.08122 * 179.71464 * 23 14 13 38 38 H 1.07994 * 119.91994 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4632 2.8187 0.0002 8 6 6.0751 4.0196 0.0014 9 16 5.1426 5.4554 0.0035 10 7 7.4209 4.0902 0.0009 11 6 8.0529 5.3242 0.1180 12 6 7.5733 6.2660 1.0286 13 6 8.1838 7.4798 1.1446 14 6 9.3086 7.7772 0.3502 15 6 9.9492 9.0293 0.4683 16 1 10.5151 9.4268 -0.3612 17 6 9.8509 9.7555 1.6599 18 7 9.4793 9.1565 2.7626 19 14 10.2503 11.5803 1.6771 20 1 8.9996 12.3624 1.5055 21 1 10.8830 11.9363 2.9726 22 1 11.1858 11.8928 0.5669 23 6 9.7872 6.8210 -0.5671 24 6 9.1629 5.6137 -0.6760 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 3.9557 0.7810 -0.8908 29 1 3.9563 0.7806 0.8892 30 1 3.6108 3.2357 0.8907 31 1 3.6101 3.2368 -0.8893 32 1 5.9915 2.0052 0.0002 33 1 7.9490 3.2806 -0.0811 34 1 6.7136 6.0349 1.6401 35 1 7.8087 8.2096 1.8467 36 1 9.4115 9.6600 3.5889 37 1 10.6462 7.0439 -1.1826 38 1 9.5283 4.8798 -1.3790 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199996483.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:02:24 Heat of formation + Delta-G solvation = -64.918102 kcal Electronic energy + Delta-G solvation = -21544.764664 eV Core-core repulsion = 18091.605317 eV Total energy + Delta-G solvation = -3453.159347 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.59454 -40.69963 -39.03623 -37.69965 -36.73741 -35.06375 -32.72886 -31.41574 -30.71748 -28.72741 -26.99633 -25.38636 -24.78783 -22.99160 -22.52278 -21.73589 -19.61589 -19.23367 -18.94243 -18.46433 -17.81066 -17.50808 -17.09862 -16.62484 -16.37087 -15.97872 -15.69542 -15.43451 -14.61650 -14.52421 -14.34896 -13.93960 -13.91180 -13.63501 -13.36362 -13.16399 -12.91322 -12.83838 -12.78675 -12.46561 -12.20096 -12.13249 -11.82309 -11.67103 -11.65119 -11.37448 -11.03838 -10.51885 -9.56079 -9.19635 -8.82379 -8.65156 -8.09621 -6.28865 0.18571 0.89020 1.10283 1.11826 1.26856 1.36026 1.39734 1.53255 1.56585 1.96768 2.21140 2.74529 2.75661 3.40647 3.78108 3.91880 3.96016 4.30595 4.33057 4.39812 4.42455 4.54238 4.70801 4.72089 4.73113 4.83347 5.08549 5.13658 5.17516 5.33932 5.36415 5.44539 5.72978 5.82701 6.01632 6.13580 6.23213 6.37473 6.60443 6.65809 6.72182 6.93638 7.05767 8.31237 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.034298 B = 0.002447 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.172089 B =11441.477908 C =11956.119330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.466 3.534 4 O -0.540 6.540 5 C -0.112 4.112 6 C 0.142 3.858 7 N -0.659 5.659 8 C 0.576 3.424 9 S -0.747 6.747 10 N -0.576 5.576 11 C -0.021 4.021 12 C -0.043 4.043 13 C -0.191 4.191 14 C 0.088 3.912 15 C -0.487 4.487 16 H 0.082 0.918 17 C 0.032 3.968 18 N -0.817 5.817 19 Si 0.982 3.018 20 H -0.269 1.269 21 H -0.266 1.266 22 H -0.253 1.253 23 C -0.238 4.238 24 C -0.073 4.073 25 H 0.134 0.866 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.150 0.850 29 H 0.148 0.852 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.423 0.577 33 H 0.420 0.580 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.289 0.711 37 H 0.110 0.890 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.063 -22.350 -3.575 24.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.309 3.691 4 O -0.430 6.430 5 C -0.149 4.149 6 C 0.018 3.982 7 N -0.292 5.292 8 C 0.212 3.788 9 S -0.620 6.620 10 N -0.199 5.199 11 C -0.115 4.115 12 C -0.065 4.065 13 C -0.212 4.212 14 C 0.086 3.914 15 C -0.516 4.516 16 H 0.100 0.900 17 C -0.184 4.184 18 N -0.442 5.442 19 Si 0.803 3.197 20 H -0.194 1.194 21 H -0.190 1.190 22 H -0.176 1.176 23 C -0.258 4.258 24 C -0.093 4.093 25 H 0.152 0.848 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.167 0.833 29 H 0.165 0.835 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.264 0.736 33 H 0.261 0.739 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.099 0.901 37 H 0.128 0.872 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.038 -21.106 -3.311 23.197 hybrid contribution 0.488 -0.021 0.266 0.556 sum -8.550 -21.127 -3.045 22.994 Atomic orbital electron populations 1.23547 0.74816 1.05762 1.02417 1.86475 1.24878 1.32366 1.83757 1.23787 0.92550 0.81213 0.71515 1.90774 1.68215 1.37625 1.46379 1.21452 0.87098 0.96383 1.10003 1.21209 0.76448 0.96296 1.04296 1.44380 1.08459 1.04513 1.71836 1.21586 0.85704 0.90742 0.80758 1.93769 1.63526 1.26789 1.77921 1.41547 1.02114 1.09757 1.66433 1.16791 1.01019 0.88080 1.05627 1.20465 0.96185 0.93942 0.95911 1.20726 0.98068 0.97246 1.05130 1.18056 0.89960 0.92879 0.90541 1.19890 1.29096 1.02907 0.99719 0.90021 1.26824 0.92416 1.04982 0.94132 1.69907 1.34343 1.39443 1.00492 0.85193 0.79294 0.76092 0.79168 1.19362 1.19017 1.17647 1.20721 1.03735 0.94721 1.06636 1.20326 0.95273 0.96933 0.96803 0.84773 0.92255 0.92164 0.83252 0.83464 0.91283 0.91038 0.73563 0.73887 0.88360 0.88970 0.90086 0.87232 0.84860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.36 -4.93 10.57 -51.50 -0.54 -5.47 16 3 C 0.47 7.87 7.96 71.24 0.57 8.44 16 4 O -0.54 -14.28 15.73 21.96 0.35 -13.94 16 5 C -0.11 -1.04 5.93 29.85 0.18 -0.86 16 6 C 0.14 2.82 4.42 86.38 0.38 3.20 16 7 N -0.66 -12.12 5.56 -350.16 -1.95 -14.07 16 8 C 0.58 17.98 7.73 179.06 1.38 19.36 16 9 S -0.75 -34.30 25.05 -56.49 -1.42 -35.72 16 10 N -0.58 -17.10 5.29 -189.61 -1.00 -18.11 16 11 C -0.02 -0.89 5.91 38.60 0.23 -0.66 16 12 C -0.04 -2.18 7.77 22.14 0.17 -2.01 16 13 C -0.19 -10.69 8.63 22.48 0.19 -10.49 16 14 C 0.09 4.85 5.57 -21.27 -0.12 4.73 16 15 C -0.49 -26.51 9.03 23.38 0.21 -26.30 16 16 H 0.08 4.23 7.90 -2.91 -0.02 4.21 16 17 C 0.03 1.67 5.13 85.24 0.44 2.10 16 18 N -0.82 -43.83 10.98 21.82 0.24 -43.59 16 19 Si 0.98 39.15 29.59 68.60 2.03 41.18 16 20 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 21 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 22 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 23 C -0.24 -11.26 9.74 22.48 0.22 -11.04 16 24 C -0.07 -2.96 9.90 22.14 0.22 -2.74 16 25 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.06 0.69 8.13 -2.38 -0.02 0.68 16 27 H 0.06 0.69 8.13 -2.39 -0.02 0.67 16 28 H 0.15 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.15 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 1.82 7.95 -2.38 -0.02 1.80 16 31 H 0.07 1.85 7.95 -2.39 -0.02 1.83 16 32 H 0.42 3.27 8.49 -92.71 -0.79 2.48 16 33 H 0.42 7.95 8.84 -92.71 -0.82 7.13 16 34 H 0.10 5.09 6.27 -4.55 -0.03 5.06 16 35 H 0.09 5.55 6.19 -2.91 -0.02 5.53 16 36 H 0.29 14.03 8.30 -92.71 -0.77 13.26 16 37 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 38 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -82.28 341.08 2.47 -79.82 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -0.51 Total: 24.66 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: 5.27 Total: -14.77 kcal Atomic # 7 Polarization: -73.05 SS G_CDS: -2.71 Total: -75.76 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.20 Total: -19.41 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Atomic # 16 Polarization: -34.30 SS G_CDS: -1.42 Total: -35.72 kcal Total: -82.28 2.47 -79.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199996483.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.898 kcal (2) G-P(sol) polarization free energy of solvation -82.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds