Wall clock time and date at job start Fri Apr 10 2020 22:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86797 * 120.00291 * 2 1 4 4 H 1.48497 * 109.47506 * 264.99499 * 3 2 1 5 5 H 1.48505 * 109.47163 * 24.99700 * 3 2 1 6 6 H 1.48496 * 109.47191 * 144.99440 * 3 2 1 7 7 C 1.40049 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00114 * 186.58476 * 7 2 1 9 9 C 1.46383 * 119.99897 * 6.59402 * 7 2 1 10 10 O 1.21686 * 119.99886 * 6.52846 * 9 7 2 11 11 N 1.34774 * 119.99665 * 186.53171 * 9 7 2 12 12 C 1.46506 * 119.99720 * 179.97438 * 11 9 7 13 13 C 1.52995 * 109.47102 * 180.02562 * 12 11 9 14 14 H 1.09003 * 110.27628 * 307.09048 * 13 12 11 15 15 C 1.54596 * 110.39434 * 69.23218 * 13 12 11 16 16 C 1.54935 * 102.92148 * 140.91444 * 15 13 12 17 17 N 1.48532 * 103.22897 * 322.59032 * 16 15 13 18 18 C 1.39754 * 111.00256 * 159.71675 * 17 16 15 19 19 C 1.38886 * 120.07802 * 359.58100 * 18 17 16 20 20 C 1.38109 * 119.93559 * 180.26882 * 19 18 17 21 21 C 1.38288 * 120.09952 * 359.45784 * 20 19 18 22 22 C 1.38277 * 120.15196 * 0.26783 * 21 20 19 23 23 C 1.38211 * 120.06250 * 0.02562 * 22 21 20 24 24 Cl 1.73597 * 120.04335 * 180.02562 * 23 22 21 25 25 C 1.47899 * 105.82002 * 39.20467 * 17 16 15 26 26 H 0.97007 * 119.99815 * 359.97438 * 1 2 3 27 27 H 0.97003 * 120.00521 * 0.02562 * 11 9 7 28 28 H 1.08997 * 109.46777 * 60.00197 * 12 11 9 29 29 H 1.09002 * 109.47274 * 300.00324 * 12 11 9 30 30 H 1.09001 * 110.72702 * 259.27335 * 15 13 12 31 31 H 1.09004 * 110.72132 * 22.38374 * 15 13 12 32 32 H 1.08999 * 110.67320 * 204.15654 * 16 15 13 33 33 H 1.09002 * 110.66850 * 81.02319 * 16 15 13 34 34 H 1.07997 * 120.02763 * 0.02562 * 19 18 17 35 35 H 1.08004 * 119.94917 * 179.72652 * 20 19 18 36 36 H 1.07993 * 119.92589 * 180.25096 * 21 20 19 37 37 H 1.08004 * 119.96584 * 179.97438 * 22 21 20 38 38 H 1.09005 * 109.91808 * 94.02701 * 25 17 16 39 39 H 1.09005 * 109.91788 * 215.31465 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.5941 1.9853 -1.3947 5 1 1.3894 2.6809 0.5916 6 1 3.4814 1.4729 0.8031 7 6 2.0069 -1.2129 -0.0005 8 1 3.0816 -1.2161 0.1067 9 6 1.2822 -2.4763 -0.1467 10 8 0.0892 -2.4692 -0.3863 11 7 1.9363 -3.6474 -0.0157 12 6 1.2109 -4.9118 -0.1614 13 6 2.1790 -6.0805 0.0331 14 1 3.0404 -5.9711 -0.6257 15 6 2.6377 -6.1603 1.5073 16 6 2.6693 -7.6855 1.7782 17 7 1.4941 -8.1894 1.0224 18 6 1.6113 -9.5587 0.7686 19 6 2.7311 -10.2543 1.2059 20 6 2.8465 -11.6063 0.9487 21 6 1.8437 -12.2705 0.2663 22 6 0.7246 -11.5829 -0.1659 23 6 0.6052 -10.2286 0.0826 24 17 -0.8003 -9.3660 -0.4596 25 6 1.4646 -7.4173 -0.2388 26 1 -0.4850 0.8401 0.0004 27 1 2.8873 -3.6530 0.1757 28 1 0.7712 -4.9657 -1.1573 29 1 0.4211 -4.9661 0.5878 30 1 3.6307 -5.7268 1.6263 31 1 1.9208 -5.6644 2.1617 32 1 2.5581 -7.8896 2.8431 33 1 3.5903 -8.1253 1.3953 34 1 3.5126 -9.7376 1.7432 35 1 3.7192 -12.1465 1.2848 36 1 1.9350 -13.3285 0.0702 37 1 -0.0566 -12.1046 -0.6990 38 1 1.9880 -7.9655 -1.0222 39 1 0.4325 -7.2328 -0.5371 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597877628.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:03:02 Heat of formation + Delta-G solvation = -34.747691 kcal Electronic energy + Delta-G solvation = -22382.549267 eV Core-core repulsion = 18928.654500 eV Total energy + Delta-G solvation = -3453.894766 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.103 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.48781 -39.63584 -38.72848 -37.33946 -35.73865 -34.57744 -33.15187 -31.90216 -30.53938 -29.62387 -28.43730 -25.84848 -24.38217 -23.19508 -21.89971 -21.60541 -21.14020 -19.17313 -18.73232 -17.43371 -17.17008 -16.97842 -16.49004 -15.93146 -15.79311 -15.67076 -15.41724 -14.91156 -14.53702 -14.48738 -14.21297 -14.07471 -13.60733 -13.40980 -13.11257 -12.98413 -12.78374 -12.63141 -12.57629 -12.43689 -12.32776 -12.21180 -12.01701 -11.82508 -11.61951 -11.46533 -10.92711 -10.58028 -9.87907 -9.78332 -9.48855 -8.93182 -8.31786 -6.84605 0.20841 0.29943 1.27452 1.40352 1.42968 1.57246 2.24886 2.47222 2.57576 2.87845 3.04918 3.53476 3.58006 3.64793 3.85119 3.86150 4.10118 4.20342 4.26914 4.37589 4.40158 4.42281 4.54871 4.58039 4.72776 4.83027 4.85955 4.87607 4.99856 5.02831 5.12743 5.27933 5.31649 5.32378 5.49614 5.72483 5.81337 5.87869 6.19019 6.24150 6.27152 6.86845 7.56809 8.49531 8.67165 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.031658 B = 0.002764 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.228469 B =10129.371203 C =10823.118791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.027 3.973 3 Si 1.000 3.000 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.246 1.246 7 C -0.574 4.574 8 H 0.091 0.909 9 C 0.538 3.462 10 O -0.638 6.638 11 N -0.750 5.750 12 C 0.150 3.850 13 C -0.095 4.095 14 H 0.100 0.900 15 C -0.114 4.114 16 C 0.037 3.963 17 N -0.484 5.484 18 C 0.093 3.907 19 C -0.164 4.164 20 C -0.088 4.088 21 C -0.132 4.132 22 C -0.098 4.098 23 C -0.076 4.076 24 Cl -0.081 7.081 25 C 0.056 3.944 26 H 0.275 0.725 27 H 0.397 0.603 28 H 0.027 0.973 29 H 0.024 0.976 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.144 0.856 38 H 0.061 0.939 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.028 -24.559 2.580 27.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.188 4.188 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.169 1.169 7 C -0.610 4.610 8 H 0.109 0.891 9 C 0.342 3.658 10 O -0.526 6.526 11 N -0.404 5.404 12 C 0.025 3.975 13 C -0.114 4.114 14 H 0.118 0.882 15 C -0.152 4.152 16 C -0.089 4.089 17 N -0.200 5.200 18 C -0.005 4.005 19 C -0.185 4.185 20 C -0.107 4.107 21 C -0.151 4.151 22 C -0.117 4.117 23 C -0.105 4.105 24 Cl -0.052 7.052 25 C -0.070 4.070 26 H 0.084 0.916 27 H 0.231 0.769 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.103 0.897 34 H 0.172 0.828 35 H 0.176 0.824 36 H 0.176 0.824 37 H 0.161 0.839 38 H 0.080 0.920 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.372 -24.267 2.661 26.150 hybrid contribution 0.272 0.855 -0.494 1.024 sum 9.644 -23.412 2.167 25.413 Atomic orbital electron populations 1.70171 1.09736 1.29072 1.36579 1.27020 0.95483 1.05152 0.91104 0.85002 0.78699 0.74802 0.79573 1.18734 1.19926 1.16869 1.21422 0.95375 0.90153 1.54089 0.89111 1.18660 0.86356 0.84466 0.76354 1.90548 1.18194 1.88098 1.55785 1.45730 1.12082 1.04454 1.78168 1.20913 0.94274 0.83960 0.98333 1.22152 0.97933 0.92241 0.99062 0.88175 1.22565 1.02686 0.95810 0.94183 1.23541 0.91519 0.94143 0.99683 1.61789 1.40364 1.00819 1.17001 1.19121 0.93608 0.90613 0.97186 1.21648 0.96368 0.96173 1.04273 1.21514 0.99567 0.93515 0.96078 1.21430 0.93068 1.01522 0.99037 1.21228 0.99807 0.91041 0.99661 1.20931 0.90229 0.93745 1.05604 1.98372 1.40621 1.77415 1.88812 1.22838 1.01614 0.92557 0.89970 0.91552 0.76908 0.95456 0.95714 0.88224 0.92429 0.88432 0.89732 0.82763 0.82361 0.82408 0.83850 0.92014 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -51.70 11.90 21.84 0.26 -51.44 16 2 C 0.03 1.54 5.49 85.31 0.47 2.01 16 3 Si 1.00 41.24 29.56 68.60 2.03 43.27 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 7 C -0.57 -32.81 9.53 24.83 0.24 -32.58 16 8 H 0.09 4.58 7.86 -2.91 -0.02 4.56 16 9 C 0.54 31.92 7.72 86.36 0.67 32.59 16 10 O -0.64 -44.40 15.11 -4.30 -0.07 -44.46 16 11 N -0.75 -33.99 5.43 -467.40 -2.54 -36.53 16 12 C 0.15 6.06 4.77 86.38 0.41 6.47 16 13 C -0.09 -2.61 3.02 -9.92 -0.03 -2.64 16 14 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 15 C -0.11 -2.70 6.42 31.80 0.20 -2.50 16 16 C 0.04 0.71 5.45 86.65 0.47 1.18 16 17 N -0.48 -11.94 5.02 -682.65 -3.43 -15.36 16 18 C 0.09 2.06 5.29 38.21 0.20 2.26 16 19 C -0.16 -2.60 8.87 22.39 0.20 -2.40 16 20 C -0.09 -1.05 10.04 22.25 0.22 -0.83 16 21 C -0.13 -1.64 10.04 22.29 0.22 -1.41 16 22 C -0.10 -1.69 9.82 22.27 0.22 -1.47 16 23 C -0.08 -1.74 6.16 22.44 0.14 -1.60 16 24 Cl -0.08 -2.14 26.10 -2.72 -0.07 -2.21 16 25 C 0.06 1.49 5.13 86.45 0.44 1.94 16 26 H 0.27 15.56 8.29 -92.70 -0.77 14.79 16 27 H 0.40 15.00 8.39 -92.71 -0.78 14.23 16 28 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.02 1.13 8.00 -2.39 -0.02 1.11 16 30 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.06 1.68 7.77 -2.38 -0.02 1.66 16 32 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 1.21 6.12 -2.39 -0.01 1.20 16 34 H 0.15 1.83 5.66 -2.91 -0.02 1.81 16 35 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 36 H 0.16 1.01 8.06 -2.91 -0.02 0.98 16 37 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 38 H 0.06 1.51 7.76 -2.38 -0.02 1.49 16 39 H 0.07 2.29 6.16 -2.38 -0.01 2.27 16 Total: -1.00 -80.63 334.93 0.57 -80.06 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 0.30 Total: 25.66 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: 4.08 Total: 1.02 kcal Atomic # 7 Polarization: -97.63 SS G_CDS: -5.71 Total: -103.33 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: -0.07 Total: -44.46 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Atomic # 17 Polarization: -2.14 SS G_CDS: -0.07 Total: -2.21 kcal Total: -80.63 0.57 -80.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597877628.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.314 kcal (2) G-P(sol) polarization free energy of solvation -80.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds