Wall clock time and date at job start Fri Apr 10 2020 22:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86803 * 119.99678 * 2 1 4 4 H 1.48498 * 109.47177 * 274.98488 * 3 2 1 5 5 H 1.48502 * 109.47127 * 34.97954 * 3 2 1 6 6 H 1.48493 * 109.47253 * 154.98126 * 3 2 1 7 7 C 1.40042 * 120.00455 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00096 * 186.15113 * 7 2 1 9 9 C 1.46375 * 120.00170 * 6.15206 * 7 2 1 10 10 O 1.21695 * 119.99693 * 353.93877 * 9 7 2 11 11 N 1.34772 * 120.00131 * 173.94085 * 9 7 2 12 12 C 1.46501 * 119.99823 * 180.27515 * 11 9 7 13 13 C 1.53003 * 109.47352 * 179.72306 * 12 11 9 14 14 H 1.08999 * 110.27332 * 54.29894 * 13 12 11 15 15 C 1.54599 * 110.30777 * 292.21128 * 13 12 11 16 16 C 1.55097 * 102.84584 * 219.18346 * 15 13 12 17 17 N 1.48535 * 103.28326 * 37.30690 * 16 15 13 18 18 C 1.39748 * 110.99925 * 200.33385 * 17 16 15 19 19 C 1.38887 * 120.08046 * 57.12180 * 18 17 16 20 20 C 1.38119 * 119.94022 * 179.72227 * 19 18 17 21 21 C 1.38294 * 120.09123 * 0.55453 * 20 19 18 22 22 C 1.38272 * 120.15949 * 359.71960 * 21 20 19 23 23 C 1.38211 * 120.06097 * 0.02562 * 22 21 20 24 24 Cl 1.73602 * 120.05119 * 180.02562 * 23 22 21 25 25 C 1.47899 * 105.81943 * 320.84290 * 17 16 15 26 26 H 0.97000 * 120.00488 * 0.02562 * 1 2 3 27 27 H 0.96992 * 120.00439 * 359.97438 * 11 9 7 28 28 H 1.09002 * 109.47294 * 299.72437 * 12 11 9 29 29 H 1.09008 * 109.47412 * 59.72371 * 12 11 9 30 30 H 1.09002 * 110.72507 * 337.48531 * 15 13 12 31 31 H 1.09000 * 110.72440 * 100.76506 * 15 13 12 32 32 H 1.09000 * 110.59359 * 278.87132 * 16 15 13 33 33 H 1.08999 * 110.83112 * 155.84945 * 16 15 13 34 34 H 1.07998 * 120.02590 * 359.97438 * 19 18 17 35 35 H 1.07997 * 119.95392 * 180.27075 * 20 19 18 36 36 H 1.08002 * 119.91913 * 179.74521 * 21 20 19 37 37 H 1.07990 * 119.97089 * 180.02562 * 22 21 20 38 38 H 1.08993 * 109.92012 * 265.97640 * 25 17 16 39 39 H 1.09002 * 109.91335 * 144.68305 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.3827 2.1073 -1.3948 5 1 1.4946 2.6200 0.8026 6 1 3.5868 1.4123 0.5921 7 6 2.0070 -1.2127 0.0005 8 1 3.0824 -1.2153 0.1008 9 6 1.2816 -2.4769 -0.1347 10 8 0.0646 -2.4828 -0.1367 11 7 1.9613 -3.6342 -0.2571 12 6 1.2353 -4.8987 -0.3985 13 6 2.2353 -6.0497 -0.5255 14 1 2.9329 -6.0380 0.3120 15 6 3.0023 -5.9489 -1.8640 16 6 3.1061 -7.4294 -2.3143 17 7 1.8016 -8.0050 -1.8979 18 6 1.8766 -9.3971 -1.8008 19 6 2.8140 -9.9870 -0.9627 20 6 2.8817 -11.3630 -0.8646 21 6 2.0254 -12.1542 -1.6083 22 6 1.0945 -11.5712 -2.4483 23 6 1.0175 -10.1948 -2.5474 24 17 -0.1518 -9.4632 -3.6016 25 6 1.4939 -7.3980 -0.5848 26 1 -0.4851 0.8400 -0.0004 27 1 2.9313 -3.6294 -0.2558 28 1 0.6079 -5.0576 0.4786 29 1 0.6098 -4.8608 -1.2905 30 1 2.4368 -5.3640 -2.5895 31 1 3.9927 -5.5207 -1.7098 32 1 3.9282 -7.9292 -1.8021 33 1 3.2294 -7.4981 -3.3951 34 1 3.4865 -9.3701 -0.3851 35 1 3.6076 -11.8218 -0.2096 36 1 2.0835 -13.2300 -1.5326 37 1 0.4269 -12.1919 -3.0273 38 1 1.8430 -8.0493 0.2164 39 1 0.4199 -7.2355 -0.4934 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597877629.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:03:04 Heat of formation + Delta-G solvation = -37.980455 kcal Electronic energy + Delta-G solvation = -22289.659497 eV Core-core repulsion = 18835.624548 eV Total energy + Delta-G solvation = -3454.034950 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.103 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.37273 -39.63025 -38.73216 -37.24307 -35.68864 -34.55989 -33.10251 -31.69595 -30.62354 -29.53548 -28.44366 -25.80661 -24.11384 -23.29820 -22.01943 -21.52068 -21.24924 -19.14401 -18.61663 -17.43469 -17.12267 -17.10333 -16.36818 -15.91585 -15.70329 -15.49786 -15.34349 -14.88756 -14.70641 -14.44775 -14.14429 -14.08802 -13.40187 -13.37198 -13.08567 -12.92199 -12.77520 -12.62250 -12.57562 -12.45381 -12.39494 -12.17364 -11.99413 -11.82809 -11.65251 -11.58211 -10.92939 -9.89223 -9.83792 -9.57656 -9.55171 -9.46355 -8.29234 -6.84300 0.15834 0.23654 1.32079 1.40660 1.42215 1.58178 2.25300 2.48251 2.60874 2.80825 3.09128 3.58479 3.61874 3.76124 3.86377 3.90653 4.09470 4.25979 4.27974 4.37834 4.41350 4.46733 4.51870 4.60944 4.77022 4.81555 4.86420 4.90288 5.03080 5.12838 5.22116 5.25035 5.33077 5.34074 5.44540 5.73725 5.75241 5.88874 6.25783 6.28380 6.31280 6.87577 7.58225 8.50728 8.68558 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.030162 B = 0.002665 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.112614 B =10504.370390 C =10938.414413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.026 3.974 3 Si 1.000 3.000 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.246 1.246 7 C -0.573 4.573 8 H 0.090 0.910 9 C 0.536 3.464 10 O -0.637 6.637 11 N -0.750 5.750 12 C 0.150 3.850 13 C -0.092 4.092 14 H 0.101 0.899 15 C -0.112 4.112 16 C 0.049 3.951 17 N -0.495 5.495 18 C 0.073 3.927 19 C -0.144 4.144 20 C -0.104 4.104 21 C -0.108 4.108 22 C -0.114 4.114 23 C -0.036 4.036 24 Cl -0.074 7.074 25 C 0.056 3.944 26 H 0.274 0.726 27 H 0.396 0.604 28 H 0.028 0.972 29 H 0.024 0.976 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.141 0.859 35 H 0.156 0.844 36 H 0.162 0.838 37 H 0.148 0.852 38 H 0.070 0.930 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.043 -24.763 -3.214 27.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.189 4.189 3 Si 0.819 3.181 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.169 1.169 7 C -0.609 4.609 8 H 0.108 0.892 9 C 0.340 3.660 10 O -0.525 6.525 11 N -0.405 5.405 12 C 0.025 3.975 13 C -0.111 4.111 14 H 0.119 0.881 15 C -0.150 4.150 16 C -0.077 4.077 17 N -0.217 5.217 18 C -0.022 4.022 19 C -0.164 4.164 20 C -0.123 4.123 21 C -0.126 4.126 22 C -0.133 4.133 23 C -0.064 4.064 24 Cl -0.045 7.045 25 C -0.071 4.071 26 H 0.084 0.916 27 H 0.230 0.770 28 H 0.047 0.953 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.158 0.842 35 H 0.174 0.826 36 H 0.179 0.821 37 H 0.165 0.835 38 H 0.088 0.912 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.475 -24.511 -3.687 26.536 hybrid contribution 0.414 0.820 0.333 0.977 sum 9.889 -23.691 -3.355 25.890 Atomic orbital electron populations 1.70206 1.09684 1.28925 1.36599 1.27026 0.95497 1.05140 0.91206 0.84980 0.78974 0.75021 0.79125 1.18870 1.19864 1.16860 1.21436 0.95261 0.90185 1.54052 0.89192 1.18663 0.86753 0.84455 0.76145 1.90557 1.16493 1.87670 1.57734 1.45729 1.09261 1.05433 1.80061 1.20934 0.94254 0.84028 0.98328 1.22121 0.96696 0.92466 0.99817 0.88111 1.22556 1.00996 0.96044 0.95420 1.23352 0.88968 0.93875 1.01472 1.62348 1.30897 1.01883 1.26534 1.18960 0.96191 0.89741 0.97293 1.21824 0.98730 0.96760 0.99055 1.21505 0.99201 0.92695 0.98888 1.21524 0.94189 1.01824 0.95036 1.21316 1.00232 0.91604 1.00159 1.21194 0.94645 0.93480 0.97053 1.98372 1.57389 1.84035 1.64726 1.22850 1.00696 0.94074 0.89467 0.91623 0.76972 0.95321 0.95790 0.92638 0.88591 0.91101 0.89913 0.84158 0.82623 0.82059 0.83471 0.91192 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.65 11.85 21.83 0.26 -51.40 16 2 C 0.03 1.47 5.49 85.30 0.47 1.94 16 3 Si 1.00 41.31 29.56 68.60 2.03 43.34 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 6 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 7 C -0.57 -32.79 9.53 24.83 0.24 -32.55 16 8 H 0.09 4.56 7.85 -2.91 -0.02 4.54 16 9 C 0.54 31.79 7.74 86.36 0.67 32.46 16 10 O -0.64 -44.23 15.05 -4.33 -0.07 -44.30 16 11 N -0.75 -33.91 5.40 -467.39 -2.53 -36.43 16 12 C 0.15 5.96 4.76 86.38 0.41 6.37 16 13 C -0.09 -2.46 3.04 -9.91 -0.03 -2.49 16 14 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 15 C -0.11 -2.72 6.36 31.86 0.20 -2.52 16 16 C 0.05 1.02 6.41 86.71 0.56 1.58 16 17 N -0.49 -12.13 4.68 -682.34 -3.19 -15.32 16 18 C 0.07 1.58 4.84 38.22 0.19 1.76 16 19 C -0.14 -2.30 7.90 22.40 0.18 -2.13 16 20 C -0.10 -1.23 10.04 22.25 0.22 -1.00 16 21 C -0.11 -1.23 10.04 22.29 0.22 -1.01 16 22 C -0.11 -1.81 9.82 22.27 0.22 -1.60 16 23 C -0.04 -0.79 6.34 22.45 0.14 -0.65 16 24 Cl -0.07 -1.87 28.44 -2.72 -0.08 -1.94 16 25 C 0.06 1.41 6.18 86.45 0.53 1.94 16 26 H 0.27 15.52 8.29 -92.71 -0.77 14.75 16 27 H 0.40 14.98 8.34 -92.71 -0.77 14.21 16 28 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.02 1.09 8.03 -2.38 -0.02 1.07 16 30 H 0.05 1.68 7.79 -2.39 -0.02 1.66 16 31 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.07 1.17 6.63 -2.39 -0.02 1.16 16 33 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.14 1.88 7.05 -2.91 -0.02 1.86 16 35 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 36 H 0.16 0.83 8.06 -2.91 -0.02 0.80 16 37 H 0.15 1.84 8.06 -2.92 -0.02 1.81 16 38 H 0.07 1.48 6.71 -2.39 -0.02 1.46 16 39 H 0.06 1.93 7.68 -2.39 -0.02 1.92 16 Total: -1.00 -80.15 339.93 0.94 -79.21 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.30 Total: 24.74 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 4.22 Total: 2.11 kcal Atomic # 7 Polarization: -97.69 SS G_CDS: -5.46 Total: -103.15 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -0.07 Total: -44.30 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -0.08 Total: -1.94 kcal Total: -80.15 0.94 -79.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597877629.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.230 kcal (2) G-P(sol) polarization free energy of solvation -80.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds