Wall clock time and date at job start Fri Apr 10 2020 22:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86798 * 120.00242 * 2 1 4 4 H 1.48499 * 109.47018 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47243 * 300.00161 * 3 2 1 6 6 H 1.48496 * 109.46891 * 60.00431 * 3 2 1 7 7 C 1.38656 * 119.99468 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99477 * 179.97438 * 7 2 1 9 9 O 1.34836 * 120.00084 * 359.97438 * 7 2 1 10 10 C 1.35749 * 116.99529 * 174.57387 * 9 7 2 11 11 C 1.38941 * 120.03525 * 174.00258 * 10 9 7 12 12 C 1.38105 * 120.03514 * 180.27326 * 11 10 9 13 13 C 1.38232 * 120.12513 * 359.97438 * 12 11 10 14 14 C 1.38772 * 120.08385 * 0.02562 * 13 12 11 15 15 O 1.35942 * 120.02109 * 180.02562 * 14 13 12 16 16 C 1.34576 * 116.99415 * 255.11480 * 15 14 13 17 17 O 1.21437 * 120.00252 * 5.08005 * 16 15 14 18 18 O 1.34547 * 119.99761 * 185.07408 * 16 15 14 19 19 C 1.45199 * 117.00063 * 180.02562 * 18 16 15 20 20 C 1.52998 * 109.47329 * 180.02562 * 19 18 16 21 21 H 1.09002 * 109.86812 * 53.99338 * 20 19 18 22 22 C 1.54094 * 109.88288 * 174.99977 * 20 19 18 23 23 C 1.54803 * 104.18878 * 121.45325 * 22 20 19 24 24 C 1.54998 * 102.09351 * 20.88188 * 23 22 20 25 25 O 1.43745 * 109.87847 * 292.83386 * 20 19 18 26 26 C 1.38598 * 119.95841 * 359.97438 * 14 13 12 27 27 H 0.97004 * 119.99622 * 359.97438 * 1 2 3 28 28 H 1.07993 * 119.98372 * 0.26970 * 11 10 9 29 29 H 1.08001 * 119.93697 * 179.97438 * 12 11 10 30 30 H 1.07999 * 119.95933 * 179.97438 * 13 12 11 31 31 H 1.09008 * 109.47068 * 300.00427 * 19 18 16 32 32 H 1.08994 * 109.47071 * 60.00498 * 19 18 16 33 33 H 1.09002 * 110.49344 * 240.13269 * 22 20 19 34 34 H 1.09006 * 110.48693 * 2.78112 * 22 20 19 35 35 H 1.09008 * 110.91156 * 139.08137 * 23 22 20 36 36 H 1.09000 * 110.91073 * 262.68250 * 23 22 20 37 37 H 1.09006 * 110.61322 * 81.47935 * 24 23 22 38 38 H 1.09004 * 110.61705 * 204.31613 * 24 23 22 39 39 H 1.08000 * 120.06128 * 179.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3462 -0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8910 2.3963 1.2125 7 6 2.0088 -1.2009 -0.0005 8 1 3.0887 -1.2009 -0.0010 9 8 1.3345 -2.3685 -0.0005 10 6 2.0691 -3.5043 -0.1155 11 6 1.4546 -4.7448 0.0024 12 6 2.2030 -5.9002 -0.1089 13 6 3.5641 -5.8259 -0.3382 14 6 4.1830 -4.5895 -0.4567 15 8 5.5216 -4.5178 -0.6827 16 6 6.2987 -4.1647 0.3578 17 8 5.8087 -4.0169 1.4590 18 8 7.6186 -3.9755 0.1778 19 6 8.3953 -3.5964 1.3446 20 6 9.8630 -3.4269 0.9472 21 1 9.9429 -2.7289 0.1138 22 6 10.6741 -2.9037 2.1484 23 6 11.7612 -3.9830 2.3711 24 6 11.8020 -4.6920 0.9934 25 8 10.4194 -4.6997 0.5776 26 6 3.4354 -3.4277 -0.3456 27 1 -0.4850 0.8401 0.0004 28 1 0.3913 -4.8057 0.1811 29 1 1.7238 -6.8637 -0.0167 30 1 4.1468 -6.7311 -0.4243 31 1 8.0161 -2.6554 1.7434 32 1 8.3117 -4.3731 2.1047 33 1 11.1325 -1.9439 1.9104 34 1 10.0378 -2.8157 3.0291 35 1 12.7231 -3.5247 2.6013 36 1 11.4648 -4.6774 3.1573 37 1 12.4117 -4.1266 0.2887 38 1 12.1801 -5.7092 1.0963 39 1 3.9154 -2.4646 -0.4372 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841567648.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:04:32 Heat of formation + Delta-G solvation = -162.498735 kcal Electronic energy + Delta-G solvation = -24655.951870 eV Core-core repulsion = 20723.515486 eV Total energy + Delta-G solvation = -3932.436383 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.118 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.11207 -39.95279 -39.11182 -38.11518 -36.18505 -35.69236 -32.64805 -32.34496 -31.29270 -29.77615 -28.97170 -26.30081 -25.44866 -23.62997 -22.43238 -21.77612 -21.44435 -20.99601 -18.94961 -18.34860 -17.87787 -17.16267 -16.92922 -16.42704 -16.07274 -15.73264 -15.22035 -14.99837 -14.74508 -14.25210 -14.05786 -13.81022 -13.56575 -13.47863 -13.16912 -12.67649 -12.41739 -12.15269 -11.97298 -11.95279 -11.67617 -11.56553 -11.36113 -11.18287 -11.13022 -10.91547 -10.81234 -10.77674 -10.51482 -10.39195 -10.06604 -9.62224 -8.91306 -8.25994 -7.41001 -6.51925 -4.11260 1.24835 2.13022 2.30820 2.57834 3.09503 3.10919 3.16838 3.41872 3.91601 4.03150 4.07792 4.38963 4.44360 4.53624 4.68627 4.77055 4.89552 5.01883 5.07198 5.09787 5.14306 5.26022 5.35224 5.42846 5.51109 5.55099 5.61096 5.72572 5.83748 5.95130 6.10618 6.42605 6.49725 6.52522 6.87820 6.96440 7.04590 7.06940 7.28066 7.56106 7.91715 8.23310 8.93232 9.58620 10.65526 Molecular weight = 308.12amu Principal moments of inertia in cm(-1) A = 0.013875 B = 0.003416 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.471512 B = 8195.344043 C = 9904.054241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.042 3.958 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.393 4.393 8 H 0.091 0.909 9 O -0.169 6.169 10 C 0.163 3.837 11 C -0.178 4.178 12 C -0.065 4.065 13 C -0.201 4.201 14 C 0.127 3.873 15 O -0.262 6.262 16 C 0.595 3.405 17 O -0.527 6.527 18 O -0.323 6.323 19 C 0.082 3.918 20 C 0.078 3.922 21 H 0.085 0.915 22 C -0.149 4.149 23 C -0.156 4.156 24 C 0.043 3.957 25 O -0.364 6.364 26 C -0.227 4.227 27 H 0.271 0.729 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.118 0.882 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.095 0.905 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.693 -6.604 3.041 21.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.163 4.163 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.469 4.469 8 H 0.109 0.891 9 O -0.072 6.072 10 C 0.108 3.892 11 C -0.198 4.198 12 C -0.084 4.084 13 C -0.220 4.220 14 C 0.086 3.914 15 O -0.178 6.178 16 C 0.404 3.596 17 O -0.425 6.425 18 O -0.241 6.241 19 C 0.009 3.991 20 C 0.020 3.980 21 H 0.103 0.897 22 C -0.187 4.187 23 C -0.193 4.193 24 C -0.034 4.034 25 O -0.283 6.283 26 C -0.247 4.247 27 H 0.081 0.919 28 H 0.144 0.856 29 H 0.143 0.857 30 H 0.136 0.864 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 20.106 -6.528 3.088 21.364 hybrid contribution 0.641 1.082 0.203 1.274 sum 20.747 -5.446 3.291 21.701 Atomic orbital electron populations 1.70045 1.05952 1.27776 1.45492 1.25299 0.95875 0.98865 0.96276 0.85639 0.79197 0.80208 0.78384 1.19084 1.19950 1.19961 1.21369 0.91794 0.80724 1.53002 0.89123 1.84019 1.33876 1.11411 1.77852 1.19103 0.89234 0.88444 0.92404 1.20383 1.00430 0.89833 1.09131 1.20502 0.92516 0.97423 0.97936 1.20555 0.95652 0.95341 1.10478 1.18124 0.76868 0.93883 1.02514 1.84289 1.17849 1.80336 1.35336 1.20676 0.81834 0.74619 0.82435 1.91123 1.74516 1.52348 1.24477 1.86275 1.16161 1.81614 1.40015 1.23478 0.87995 1.02178 0.85458 1.22826 0.90512 0.87025 0.97627 0.89680 1.22927 0.97622 0.99818 0.98292 1.23157 0.99428 0.98086 0.98667 1.23602 0.83982 1.01763 0.94025 1.89016 1.23750 1.33947 1.81584 1.21235 0.95063 0.98021 1.10390 0.91895 0.85618 0.85658 0.86389 0.89079 0.89812 0.89505 0.89633 0.89824 0.90171 0.91901 0.88703 0.84831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.03 13.67 55.48 0.76 -24.27 16 2 C 0.04 1.15 5.49 -17.51 -0.10 1.06 16 3 Si 0.94 20.67 29.55 -169.99 -5.02 15.65 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.39 -11.13 9.44 30.89 0.29 -10.83 16 8 H 0.09 2.44 5.30 -52.49 -0.28 2.16 16 9 O -0.17 -4.82 9.76 0.04 0.00 -4.82 16 10 C 0.16 4.01 6.64 -39.13 -0.26 3.75 16 11 C -0.18 -3.73 9.99 -39.37 -0.39 -4.12 16 12 C -0.07 -1.17 10.03 -39.63 -0.40 -1.57 16 13 C -0.20 -3.77 9.98 -39.39 -0.39 -4.16 16 14 C 0.13 2.68 5.10 -39.25 -0.20 2.48 16 15 O -0.26 -5.25 10.07 -32.40 -0.33 -5.58 16 16 C 0.59 11.38 8.78 101.05 0.89 12.26 16 17 O -0.53 -11.17 15.76 -27.41 -0.43 -11.61 16 18 O -0.32 -5.23 10.26 -48.65 -0.50 -5.73 16 19 C 0.08 1.01 4.92 37.16 0.18 1.19 16 20 C 0.08 0.76 3.72 -26.16 -0.10 0.66 16 21 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 22 C -0.15 -0.97 6.64 -25.21 -0.17 -1.14 16 23 C -0.16 -0.89 7.15 -24.73 -0.18 -1.07 16 24 C 0.04 0.31 7.72 38.21 0.29 0.60 16 25 O -0.36 -4.14 11.18 -35.99 -0.40 -4.54 16 26 C -0.23 -5.34 8.74 -39.25 -0.34 -5.68 16 27 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 28 H 0.13 2.44 8.06 -52.49 -0.42 2.01 16 29 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 30 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 31 H 0.09 1.02 8.14 -51.92 -0.42 0.59 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.52 7.70 -51.93 -0.40 0.12 16 35 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.13 3.22 5.71 -52.49 -0.30 2.92 16 LS Contribution 342.26 15.07 5.16 5.16 Total: -1.00 -33.60 342.26 -6.40 -40.00 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -4.76 Total: 2.31 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -0.87 Total: -6.57 kcal Atomic # 7 Polarization: -25.03 SS G_CDS: 0.76 Total: -24.27 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -1.66 Total: -32.27 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.60 -6.40 -40.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841567648.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.499 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds