Wall clock time and date at job start Fri Apr 10 2020 22:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86798 * 120.00242 * 2 1 4 4 H 1.48499 * 109.47018 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47243 * 300.00161 * 3 2 1 6 6 H 1.48496 * 109.46891 * 60.00431 * 3 2 1 7 7 C 1.38656 * 119.99468 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99477 * 179.97438 * 7 2 1 9 9 O 1.34836 * 120.00084 * 359.97438 * 7 2 1 10 10 C 1.35749 * 116.99529 * 174.57387 * 9 7 2 11 11 C 1.38941 * 120.03525 * 174.00258 * 10 9 7 12 12 C 1.38105 * 120.03514 * 180.27326 * 11 10 9 13 13 C 1.38232 * 120.12513 * 359.97438 * 12 11 10 14 14 C 1.38772 * 120.08385 * 0.02562 * 13 12 11 15 15 O 1.35942 * 120.02109 * 180.02562 * 14 13 12 16 16 C 1.34576 * 116.99415 * 255.11480 * 15 14 13 17 17 O 1.21437 * 120.00252 * 5.08005 * 16 15 14 18 18 O 1.34547 * 119.99761 * 185.07408 * 16 15 14 19 19 C 1.45199 * 117.00063 * 180.02562 * 18 16 15 20 20 C 1.52998 * 109.47329 * 180.02562 * 19 18 16 21 21 H 1.09002 * 109.86812 * 53.99338 * 20 19 18 22 22 C 1.54094 * 109.88288 * 174.99977 * 20 19 18 23 23 C 1.54803 * 104.18878 * 121.45325 * 22 20 19 24 24 C 1.54998 * 102.09351 * 20.88188 * 23 22 20 25 25 O 1.43745 * 109.87847 * 292.83386 * 20 19 18 26 26 C 1.38598 * 119.95841 * 359.97438 * 14 13 12 27 27 H 0.97004 * 119.99622 * 359.97438 * 1 2 3 28 28 H 1.07993 * 119.98372 * 0.26970 * 11 10 9 29 29 H 1.08001 * 119.93697 * 179.97438 * 12 11 10 30 30 H 1.07999 * 119.95933 * 179.97438 * 13 12 11 31 31 H 1.09008 * 109.47068 * 300.00427 * 19 18 16 32 32 H 1.08994 * 109.47071 * 60.00498 * 19 18 16 33 33 H 1.09002 * 110.49344 * 240.13269 * 22 20 19 34 34 H 1.09006 * 110.48693 * 2.78112 * 22 20 19 35 35 H 1.09008 * 110.91156 * 139.08137 * 23 22 20 36 36 H 1.09000 * 110.91073 * 262.68250 * 23 22 20 37 37 H 1.09006 * 110.61322 * 81.47935 * 24 23 22 38 38 H 1.09004 * 110.61705 * 204.31613 * 24 23 22 39 39 H 1.08000 * 120.06128 * 179.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3462 -0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8910 2.3963 1.2125 7 6 2.0088 -1.2009 -0.0005 8 1 3.0887 -1.2009 -0.0010 9 8 1.3345 -2.3685 -0.0005 10 6 2.0691 -3.5043 -0.1155 11 6 1.4546 -4.7448 0.0024 12 6 2.2030 -5.9002 -0.1089 13 6 3.5641 -5.8259 -0.3382 14 6 4.1830 -4.5895 -0.4567 15 8 5.5216 -4.5178 -0.6827 16 6 6.2987 -4.1647 0.3578 17 8 5.8087 -4.0169 1.4590 18 8 7.6186 -3.9755 0.1778 19 6 8.3953 -3.5964 1.3446 20 6 9.8630 -3.4269 0.9472 21 1 9.9429 -2.7289 0.1138 22 6 10.6741 -2.9037 2.1484 23 6 11.7612 -3.9830 2.3711 24 6 11.8020 -4.6920 0.9934 25 8 10.4194 -4.6997 0.5776 26 6 3.4354 -3.4277 -0.3456 27 1 -0.4850 0.8401 0.0004 28 1 0.3913 -4.8057 0.1811 29 1 1.7238 -6.8637 -0.0167 30 1 4.1468 -6.7311 -0.4243 31 1 8.0161 -2.6554 1.7434 32 1 8.3117 -4.3731 2.1047 33 1 11.1325 -1.9439 1.9104 34 1 10.0378 -2.8157 3.0291 35 1 12.7231 -3.5247 2.6013 36 1 11.4648 -4.6774 3.1573 37 1 12.4117 -4.1266 0.2887 38 1 12.1801 -5.7092 1.0963 39 1 3.9154 -2.4646 -0.4372 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841567648.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:04:31 Heat of formation + Delta-G solvation = -183.465970 kcal Electronic energy + Delta-G solvation = -24656.861077 eV Core-core repulsion = 20723.515486 eV Total energy + Delta-G solvation = -3933.345591 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.118 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.64609 -41.05255 -40.47196 -39.62982 -37.80861 -37.29734 -34.36678 -33.30906 -32.10878 -31.39355 -30.69290 -27.58098 -27.07631 -25.03264 -23.51639 -23.11495 -22.58895 -22.09777 -20.42015 -20.17631 -19.55215 -18.42062 -18.37366 -17.37960 -17.19248 -16.93233 -16.71443 -16.38243 -16.19924 -15.95209 -15.60743 -15.03413 -14.83586 -14.65302 -14.57256 -14.32436 -13.74523 -13.37577 -13.24907 -13.07452 -12.83376 -12.70714 -12.67003 -12.54542 -12.33782 -12.33120 -12.18442 -12.06224 -11.92230 -11.62882 -11.58975 -10.88415 -10.77789 -9.91323 -9.21978 -8.55137 -6.24476 -0.28977 0.48600 0.76571 1.04729 1.30403 1.38635 1.48437 2.11789 2.62183 2.75428 2.90962 3.03606 3.34762 3.45661 3.68310 3.83350 3.92205 3.94052 4.04374 4.07838 4.14685 4.25484 4.34415 4.36915 4.47154 4.54557 4.77609 4.83074 4.86645 4.91359 4.94676 4.99729 5.03131 5.15395 5.29254 5.37793 5.44734 5.49787 5.85568 5.91052 5.94023 6.69840 6.88697 7.62456 8.67210 Molecular weight = 308.12amu Principal moments of inertia in cm(-1) A = 0.013875 B = 0.003416 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.471512 B = 8195.344043 C = 9904.054241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.014 4.014 3 Si 1.015 2.985 4 H -0.259 1.259 5 H -0.262 1.262 6 H -0.263 1.263 7 C -0.418 4.418 8 H 0.090 0.910 9 O -0.216 6.216 10 C 0.129 3.871 11 C -0.181 4.181 12 C -0.045 4.045 13 C -0.180 4.180 14 C 0.114 3.886 15 O -0.265 6.265 16 C 0.597 3.403 17 O -0.552 6.552 18 O -0.322 6.322 19 C 0.072 3.928 20 C 0.078 3.922 21 H 0.087 0.913 22 C -0.145 4.145 23 C -0.150 4.150 24 C 0.034 3.966 25 O -0.398 6.398 26 C -0.244 4.244 27 H 0.276 0.724 28 H 0.138 0.862 29 H 0.182 0.818 30 H 0.157 0.843 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.012 -7.915 3.432 24.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.213 4.213 3 Si 0.834 3.166 4 H -0.183 1.183 5 H -0.186 1.186 6 H -0.187 1.187 7 C -0.494 4.494 8 H 0.107 0.893 9 O -0.122 6.122 10 C 0.077 3.923 11 C -0.200 4.200 12 C -0.063 4.063 13 C -0.199 4.199 14 C 0.074 3.926 15 O -0.180 6.180 16 C 0.408 3.592 17 O -0.451 6.451 18 O -0.240 6.240 19 C 0.000 4.000 20 C 0.020 3.980 21 H 0.105 0.895 22 C -0.182 4.182 23 C -0.187 4.187 24 C -0.041 4.041 25 O -0.318 6.318 26 C -0.264 4.264 27 H 0.086 0.914 28 H 0.156 0.844 29 H 0.199 0.801 30 H 0.175 0.825 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.125 0.875 34 H 0.108 0.892 35 H 0.125 0.875 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.122 0.878 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 22.475 -7.890 3.473 24.072 hybrid contribution 0.097 1.148 0.074 1.154 sum 22.573 -6.742 3.547 23.824 Atomic orbital electron populations 1.70158 1.07761 1.29059 1.47809 1.26522 0.96899 1.02456 0.95430 0.84598 0.77898 0.75015 0.79115 1.18324 1.18635 1.18721 1.21707 0.92050 0.81585 1.54063 0.89250 1.83976 1.35122 1.12345 1.80801 1.19672 0.89953 0.88863 0.93785 1.20797 1.01530 0.89438 1.08221 1.21108 0.91909 0.98487 0.94802 1.21149 0.96377 0.95562 1.06779 1.18333 0.77417 0.94136 1.02747 1.84266 1.17444 1.80455 1.35864 1.20762 0.82590 0.74052 0.81808 1.91101 1.75175 1.53562 1.25307 1.86330 1.14554 1.81063 1.42021 1.23944 0.89050 1.02476 0.84556 1.22946 0.88953 0.86847 0.99220 0.89492 1.22977 0.97467 1.00849 0.96918 1.23164 1.00240 0.97674 0.97648 1.23852 0.82242 1.02896 0.95152 1.88972 1.25983 1.34693 1.82184 1.21193 0.95082 0.98337 1.11761 0.91443 0.84420 0.80090 0.82507 0.88272 0.89808 0.87529 0.89227 0.87473 0.90307 0.90745 0.87831 0.86864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.49 13.67 21.61 0.30 -55.19 16 2 C -0.01 -0.82 5.49 84.83 0.47 -0.35 16 3 Si 1.01 43.54 29.55 68.60 2.03 45.57 16 4 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 5 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.42 -25.03 9.44 67.92 0.64 -24.39 16 8 H 0.09 5.14 5.30 -2.91 -0.02 5.12 16 9 O -0.22 -13.10 9.76 -22.79 -0.22 -13.33 16 10 C 0.13 6.54 6.64 22.56 0.15 6.69 16 11 C -0.18 -7.38 9.99 22.41 0.22 -7.16 16 12 C -0.05 -1.45 10.03 22.24 0.22 -1.22 16 13 C -0.18 -6.13 9.98 22.40 0.22 -5.90 16 14 C 0.11 4.76 5.10 22.48 0.11 4.87 16 15 O -0.26 -10.45 10.07 8.82 0.09 -10.37 16 16 C 0.60 22.78 8.78 113.37 1.00 23.78 16 17 O -0.55 -23.50 15.76 27.87 0.44 -23.06 16 18 O -0.32 -10.35 10.26 -46.35 -0.48 -10.83 16 19 C 0.07 1.73 4.92 71.98 0.35 2.08 16 20 C 0.08 1.43 3.72 30.96 0.12 1.54 16 21 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 22 C -0.14 -1.56 6.64 31.58 0.21 -1.35 16 23 C -0.15 -1.33 7.15 31.89 0.23 -1.10 16 24 C 0.03 0.43 7.72 72.67 0.56 0.99 16 25 O -0.40 -8.64 11.18 -148.25 -1.66 -10.30 16 26 C -0.24 -11.83 8.74 22.48 0.20 -11.63 16 27 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 28 H 0.14 5.22 8.06 -2.91 -0.02 5.20 16 29 H 0.18 3.84 8.06 -2.91 -0.02 3.81 16 30 H 0.16 4.20 8.06 -2.91 -0.02 4.18 16 31 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 32 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.11 0.75 8.14 -2.39 -0.02 0.74 16 34 H 0.09 0.91 7.70 -2.38 -0.02 0.89 16 35 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 36 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.11 5.83 5.71 -2.91 -0.02 5.81 16 Total: -1.00 -77.86 342.26 6.27 -71.59 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 1.07 Total: 19.06 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 4.70 Total: -13.15 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.30 Total: -55.19 kcal Atomic # 8 Polarization: -66.05 SS G_CDS: -1.83 Total: -67.88 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -77.86 6.27 -71.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841567648.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.881 kcal (2) G-P(sol) polarization free energy of solvation -77.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds