Wall clock time and date at job start Fri Apr 10 2020 22:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86797 * 119.99803 * 2 1 4 4 H 1.48507 * 109.46986 * 264.72944 * 3 2 1 5 5 H 1.48496 * 109.47827 * 24.73224 * 3 2 1 6 6 H 1.48501 * 109.47246 * 144.73432 * 3 2 1 7 7 C 1.40048 * 120.00033 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99939 * 351.28491 * 7 2 1 9 9 C 1.46375 * 120.00097 * 171.29087 * 7 2 1 10 10 O 1.21686 * 119.99565 * 345.13516 * 9 7 2 11 11 N 1.34767 * 120.00256 * 165.14519 * 9 7 2 12 12 C 1.46927 * 120.63346 * 174.73957 * 11 9 7 13 13 C 1.53189 * 108.89540 * 233.55614 * 12 11 9 14 14 C 1.53076 * 109.29392 * 305.57809 * 13 12 11 15 15 C 1.50703 * 109.43826 * 181.23701 * 14 13 12 16 16 O 1.21284 * 119.99835 * 239.79538 * 15 14 13 17 17 N 1.34774 * 120.00200 * 59.79532 * 15 14 13 18 18 C 1.46498 * 119.99942 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.47413 * 180.02562 * 18 17 15 20 20 F 1.39899 * 109.47089 * 59.99613 * 19 18 17 21 21 F 1.39889 * 109.47521 * 180.02562 * 19 18 17 22 22 F 1.39902 * 109.46519 * 299.99941 * 19 18 17 23 23 C 1.53037 * 109.65821 * 61.15332 * 14 13 12 24 24 C 1.46933 * 120.63188 * 354.76116 * 11 9 7 25 25 H 0.96993 * 119.99762 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.58619 * 353.41900 * 12 11 9 27 27 H 1.09006 * 109.58641 * 113.69570 * 12 11 9 28 28 H 1.09005 * 109.49635 * 65.38772 * 13 12 11 29 29 H 1.09004 * 109.49867 * 185.48478 * 13 12 11 30 30 H 1.08993 * 109.34601 * 301.12544 * 14 13 12 31 31 H 0.96994 * 120.00215 * 359.97438 * 17 15 14 32 32 H 1.09000 * 109.47361 * 299.99698 * 18 17 15 33 33 H 1.09003 * 109.47726 * 59.99677 * 18 17 15 34 34 H 1.09005 * 109.49386 * 178.74493 * 23 14 13 35 35 H 1.09004 * 109.52497 * 58.66704 * 23 14 13 36 36 H 1.09006 * 109.58332 * 246.16002 * 24 11 9 37 37 H 1.08996 * 109.58280 * 6.43767 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.5996 1.9821 -1.3942 5 1 1.3870 2.6823 0.5857 6 1 3.4782 1.4749 0.8084 7 6 2.0070 -1.2128 0.0005 8 1 1.4764 -2.1427 0.1427 9 6 3.4581 -1.2203 -0.1914 10 8 4.0207 -0.2283 -0.6160 11 7 4.1710 -2.3257 0.1019 12 6 5.6091 -2.3890 -0.1925 13 6 5.8896 -3.6414 -1.0289 14 6 5.3394 -4.8700 -0.3001 15 6 5.6404 -6.1075 -1.1057 16 8 4.7335 -6.8087 -1.5018 17 7 6.9173 -6.4351 -1.3860 18 6 7.2099 -7.6379 -2.1697 19 6 8.7236 -7.7781 -2.3429 20 9 9.3292 -7.8817 -1.0861 21 9 9.0029 -8.9263 -3.0917 22 9 9.2226 -6.6541 -3.0099 23 6 3.8254 -4.7304 -0.1264 24 6 3.5249 -3.4907 0.7217 25 1 -0.4849 0.8400 -0.0004 26 1 5.9071 -1.5020 -0.7514 27 1 6.1712 -2.4391 0.7402 28 1 5.4018 -3.5476 -1.9992 29 1 6.9648 -3.7509 -1.1707 30 1 5.8114 -4.9504 0.6790 31 1 7.6426 -5.8742 -1.0696 32 1 6.8214 -8.5136 -1.6498 33 1 6.7376 -7.5575 -3.1488 34 1 3.4333 -5.6166 0.3728 35 1 3.3547 -4.6254 -1.1039 36 1 3.9168 -3.6331 1.7288 37 1 2.4479 -3.3293 0.7682 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649758276.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:02:46 Heat of formation + Delta-G solvation = -242.416161 kcal Electronic energy + Delta-G solvation = -25700.280785 eV Core-core repulsion = 21254.814933 eV Total energy + Delta-G solvation = -4445.465852 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.113 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.63423 -48.14837 -48.10712 -40.38138 -38.55698 -36.17738 -35.40290 -32.86263 -32.42256 -30.76987 -29.74477 -26.89327 -25.33274 -23.67029 -22.76915 -21.65787 -20.46268 -19.11615 -19.05507 -18.88569 -18.43153 -16.89771 -16.80159 -16.14730 -15.81788 -15.59031 -15.01749 -14.96013 -14.85343 -14.53481 -14.31112 -14.25500 -14.21335 -14.17942 -14.04513 -13.67466 -13.36270 -12.95083 -12.46286 -12.40517 -12.08973 -12.06908 -11.77571 -11.54522 -11.05110 -10.78233 -10.57886 -10.55324 -10.31314 -9.92767 -9.70115 -9.41068 -9.03586 -7.95094 -7.60841 -6.63240 -4.85086 2.03823 2.36656 2.53489 3.18303 3.44147 3.48122 3.49980 3.70906 3.73637 4.16007 4.16989 4.44842 4.54158 4.64575 4.77845 4.85511 4.86667 5.28097 5.39978 5.43834 5.61570 5.70200 5.74944 5.83641 6.01675 6.11740 6.22939 6.31996 6.43761 6.62066 6.95170 7.05325 7.60436 7.85353 7.86045 8.29150 8.69230 9.10768 10.00657 10.37549 Molecular weight = 308.11amu Principal moments of inertia in cm(-1) A = 0.033039 B = 0.002917 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.287972 B = 9597.978623 C =10034.951480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.101 3.899 3 Si 0.967 3.033 4 H -0.278 1.278 5 H -0.322 1.322 6 H -0.266 1.266 7 C -0.533 4.533 8 H 0.092 0.908 9 C 0.554 3.446 10 O -0.617 6.617 11 N -0.633 5.633 12 C 0.120 3.880 13 C -0.125 4.125 14 C -0.100 4.100 15 C 0.528 3.472 16 O -0.527 6.527 17 N -0.735 5.735 18 C 0.078 3.922 19 C 0.448 3.552 20 F -0.178 7.178 21 F -0.174 7.174 22 F -0.177 7.177 23 C -0.114 4.114 24 C 0.120 3.880 25 H 0.282 0.718 26 H 0.090 0.910 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.408 0.592 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.153 -16.168 -1.138 22.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.117 4.117 3 Si 0.799 3.201 4 H -0.204 1.204 5 H -0.253 1.253 6 H -0.191 1.191 7 C -0.569 4.569 8 H 0.110 0.890 9 C 0.364 3.636 10 O -0.509 6.509 11 N -0.367 5.367 12 C -0.004 4.004 13 C -0.164 4.164 14 C -0.122 4.122 15 C 0.316 3.684 16 O -0.401 6.401 17 N -0.391 5.391 18 C -0.048 4.048 19 C 0.393 3.607 20 F -0.160 7.160 21 F -0.156 7.156 22 F -0.159 7.159 23 C -0.153 4.153 24 C -0.004 4.004 25 H 0.092 0.908 26 H 0.108 0.892 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.244 0.756 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 15.591 -16.154 -1.647 22.511 hybrid contribution 1.021 0.590 0.029 1.180 sum 16.613 -15.564 -1.617 22.822 Atomic orbital electron populations 1.69561 1.07941 1.30010 1.38239 1.25767 0.94733 1.02044 0.89119 0.85232 0.77673 0.77459 0.79712 1.20432 1.25306 1.19093 1.20783 0.88896 0.95768 1.51420 0.89043 1.18331 0.88197 0.80230 0.76843 1.90200 1.72666 1.33636 1.54423 1.47727 1.07069 1.16281 1.65637 1.21190 0.83973 0.97211 0.98011 1.21984 0.99991 0.94150 1.00226 1.21381 1.00072 0.91488 0.99217 1.21023 0.81039 0.86828 0.79517 1.90728 1.44754 1.52645 1.52015 1.45809 1.09656 1.26662 1.57018 1.22429 0.88201 0.92708 1.01474 1.20577 0.91701 0.74195 0.74181 1.93230 1.85853 1.95781 1.41128 1.93225 1.94813 1.50628 1.76899 1.93243 1.89644 1.52089 1.80884 1.21814 0.92048 0.98893 1.02556 1.21549 1.00743 0.84051 0.94086 0.90786 0.89201 0.93137 0.90920 0.91380 0.88224 0.75603 0.86832 0.86794 0.90740 0.90674 0.93258 0.87768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.30 13.92 55.55 0.77 -22.53 16 2 C 0.10 2.86 5.52 -17.36 -0.10 2.76 16 3 Si 0.97 25.23 25.85 -169.99 -4.39 20.84 16 4 H -0.28 -7.49 7.11 56.52 0.40 -7.09 16 5 H -0.32 -7.96 7.11 56.52 0.40 -7.56 16 6 H -0.27 -7.22 6.68 56.52 0.38 -6.84 16 7 C -0.53 -14.69 9.27 -35.63 -0.33 -15.02 16 8 H 0.09 2.50 6.11 -52.48 -0.32 2.18 16 9 C 0.55 14.35 7.28 -12.99 -0.09 14.26 16 10 O -0.62 -17.47 11.88 5.20 0.06 -17.41 16 11 N -0.63 -12.88 2.97 -174.43 -0.52 -13.40 16 12 C 0.12 1.96 6.41 -3.71 -0.02 1.94 16 13 C -0.12 -1.57 5.27 -26.59 -0.14 -1.71 16 14 C -0.10 -1.19 2.48 -91.71 -0.23 -1.41 16 15 C 0.53 6.18 7.16 -10.99 -0.08 6.11 16 16 O -0.53 -8.00 15.98 5.55 0.09 -7.91 16 17 N -0.74 -6.17 5.30 -60.29 -0.32 -6.49 16 18 C 0.08 0.55 5.64 -4.04 -0.02 0.53 16 19 C 0.45 3.15 3.11 37.16 0.12 3.27 16 20 F -0.18 -1.36 17.18 2.25 0.04 -1.32 16 21 F -0.17 -1.32 17.32 2.25 0.04 -1.29 16 22 F -0.18 -1.43 17.18 2.25 0.04 -1.39 16 23 C -0.11 -1.66 4.66 -26.62 -0.12 -1.79 16 24 C 0.12 2.03 6.35 -3.71 -0.02 2.01 16 25 H 0.28 7.32 8.29 -40.82 -0.34 6.98 16 26 H 0.09 1.66 7.04 -51.93 -0.37 1.29 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 0.63 7.53 -51.93 -0.39 0.24 16 30 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.41 2.68 7.75 -40.82 -0.32 2.37 16 32 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 1.00 8.07 -51.93 -0.42 0.58 16 35 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 1.98 5.38 -51.93 -0.28 1.70 16 LS Contribution 318.76 15.07 4.80 4.80 Total: -1.00 -33.35 318.76 -4.64 -38.00 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -4.21 Total: -2.82 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: -1.05 Total: 10.92 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: -0.07 Total: -42.42 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: 0.15 Total: -25.32 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.12 Total: -3.99 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -4.39 Total: 20.84 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.35 -4.64 -38.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649758276.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -204.418 kcal (2) G-P(sol) polarization free energy of solvation -33.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -242.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds