Wall clock time and date at job start Fri Apr 10 2020 22:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47141 * 2 1 4 4 N 1.46898 * 109.46976 * 120.00023 * 2 1 3 5 5 C 1.50702 * 109.47070 * 239.99753 * 2 1 3 6 6 N 1.29435 * 124.80367 * 285.02559 * 5 2 1 7 7 C 1.30939 * 117.36229 * 180.02562 * 6 5 2 8 8 C 1.35663 * 114.19229 * 359.97438 * 7 6 5 9 9 C 1.46685 * 126.13122 * 180.02562 * 8 7 6 10 10 O 1.21688 * 119.99710 * 325.47658 * 9 8 7 11 11 N 1.34772 * 119.99987 * 145.47810 * 9 8 7 12 12 C 1.46502 * 119.99687 * 183.80640 * 11 9 8 13 13 C 1.50702 * 109.47295 * 89.99911 * 12 11 9 14 14 H 1.08003 * 119.99662 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00020 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99894 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00086 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46979 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47080 * 120.00110 * 17 15 13 20 20 H 1.48499 * 109.47345 * 240.00551 * 17 15 13 21 21 C 1.46501 * 120.00304 * 3.80307 * 11 9 8 22 22 C 1.53003 * 109.47133 * 94.42457 * 21 11 9 23 23 C 1.47194 * 109.46843 * 180.02562 * 22 21 11 24 24 N 5.96881 * 96.41481 * 308.79295 * 2 1 3 25 25 S 1.70951 * 124.80291 * 105.02688 * 5 2 1 26 26 H 1.09004 * 109.47792 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47388 * 300.00470 * 1 2 3 28 28 H 1.09002 * 109.47421 * 59.99835 * 1 2 3 29 29 H 1.00898 * 111.00344 * 59.99988 * 4 2 1 30 30 H 1.00906 * 111.00231 * 183.95586 * 4 2 1 31 31 H 1.07995 * 122.90230 * 179.97438 * 7 6 5 32 32 H 1.09004 * 109.46925 * 209.99773 * 12 11 9 33 33 H 1.08998 * 109.47142 * 329.99597 * 12 11 9 34 34 H 0.96997 * 119.99559 * 179.97438 * 16 15 13 35 35 H 1.08992 * 109.47149 * 214.42788 * 21 11 9 36 36 H 1.09008 * 109.46876 * 334.42822 * 21 11 9 37 37 H 1.09000 * 109.47041 * 300.00293 * 22 21 11 38 38 H 1.09001 * 109.46364 * 60.00113 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0323 -0.7105 -1.2304 6 7 2.0187 -1.9936 -1.3999 7 6 2.4934 -2.4566 -2.5290 8 6 2.9412 -1.4982 -3.3784 9 6 3.5214 -1.7224 -4.7069 10 8 4.2018 -2.7097 -4.9149 11 7 3.3009 -0.8351 -5.6970 12 6 3.8100 -1.1002 -7.0449 13 6 2.7726 -1.8568 -7.8339 14 1 1.8287 -2.1148 -7.3768 15 6 3.0285 -2.2196 -9.1392 16 7 4.1781 -1.9059 -9.6956 17 14 1.7429 -3.1581 -10.1169 18 1 0.5457 -3.3869 -9.2687 19 1 1.3574 -2.3682 -11.3139 20 1 2.3034 -4.4648 -10.5455 21 6 2.5522 0.3945 -5.4254 22 6 3.5301 1.5272 -5.1064 23 6 2.7778 2.7624 -4.8329 24 7 2.1968 3.7161 -4.6231 25 16 2.7006 0.0643 -2.6000 26 1 -0.3635 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.6961 -1.6479 1.2228 30 1 3.0261 -0.6501 1.2559 31 1 2.5257 -3.5102 -2.7637 32 1 4.0278 -0.1555 -7.5433 33 1 4.7211 -1.6947 -6.9788 34 1 4.3583 -2.1615 -10.6137 35 1 1.9610 0.6609 -6.3014 36 1 1.8897 0.2360 -4.5744 37 1 4.1214 1.2607 -4.2303 38 1 4.1926 1.6856 -5.9573 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160751391.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:02:18 Heat of formation + Delta-G solvation = 37.974740 kcal Electronic energy + Delta-G solvation = -22741.643264 eV Core-core repulsion = 19325.238437 eV Total energy + Delta-G solvation = -3416.404828 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.105 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.16279 -39.14132 -36.97323 -36.04379 -35.41230 -33.02037 -31.05379 -30.41954 -29.29394 -27.54108 -25.96007 -24.24953 -23.56810 -22.35161 -20.47580 -18.70091 -18.31115 -17.67063 -16.68447 -16.59602 -16.31281 -15.96658 -15.09434 -15.05459 -14.90516 -14.57635 -14.27308 -14.03192 -13.89194 -13.67878 -13.05563 -12.63657 -12.58602 -12.30916 -12.29498 -12.24384 -11.91293 -11.71438 -11.58552 -11.39811 -11.21261 -11.00692 -10.75782 -10.30018 -10.10212 -9.83385 -9.54345 -9.32702 -9.12567 -8.90997 -8.56024 -8.04668 -6.17942 -4.23310 0.26292 1.07678 1.49090 2.51497 2.66244 2.73005 3.23107 3.26293 3.31943 3.37875 3.52704 3.77777 4.08732 4.34100 4.35566 4.60408 4.75496 4.84452 4.93253 4.96290 5.06128 5.17765 5.25758 5.33386 5.48292 5.61223 5.65734 5.87283 5.92114 6.04769 6.67657 6.74761 7.06824 7.16616 7.26567 7.48231 7.51709 7.77538 7.99489 8.05171 8.58013 8.82175 9.42837 10.90268 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.016048 B = 0.004284 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.399502 B = 6534.978706 C = 7436.431354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.168 3.832 3 H 0.099 0.901 4 N -0.825 5.825 5 C -0.011 4.011 6 N -0.472 5.472 7 C 0.101 3.899 8 C -0.267 4.267 9 C 0.584 3.416 10 O -0.513 6.513 11 N -0.585 5.585 12 C 0.245 3.755 13 C -0.533 4.533 14 H 0.060 0.940 15 C 0.065 3.935 16 N -0.891 5.891 17 Si 0.898 3.102 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.103 3.897 22 C -0.052 4.052 23 C 0.216 3.784 24 N -0.435 5.435 25 S 0.173 5.827 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.353 0.647 30 H 0.343 0.657 31 H 0.186 0.814 32 H 0.040 0.960 33 H 0.051 0.949 34 H 0.265 0.735 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.080 6.017 16.350 17.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.052 3.948 3 H 0.117 0.883 4 N -0.354 5.354 5 C -0.288 4.288 6 N -0.186 5.186 7 C -0.054 4.054 8 C -0.391 4.391 9 C 0.368 3.632 10 O -0.390 6.390 11 N -0.315 5.315 12 C 0.126 3.874 13 C -0.572 4.572 14 H 0.078 0.922 15 C -0.138 4.138 16 N -0.530 5.530 17 Si 0.726 3.274 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.208 1.208 21 C -0.025 4.025 22 C -0.094 4.094 23 C -0.102 4.102 24 N -0.112 5.112 25 S 0.429 5.571 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.167 0.833 30 H 0.156 0.844 31 H 0.202 0.798 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.121 0.879 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.908 8.170 16.956 19.223 hybrid contribution 0.115 -2.493 -1.748 3.047 sum -3.793 5.676 15.208 16.670 Atomic orbital electron populations 1.21810 0.92172 1.03262 1.02667 1.20215 0.96543 0.96388 0.81626 0.88274 1.59115 1.16570 1.22871 1.36797 1.29051 1.03028 0.94009 1.02694 1.66064 1.18508 1.12049 1.21989 1.22078 0.95168 1.01368 0.86829 1.26156 1.13913 0.95936 1.03094 1.16750 0.80980 0.83848 0.81620 1.90849 1.38305 1.28101 1.81753 1.48124 1.53565 1.17913 1.11943 1.19474 0.96015 0.97575 0.74294 1.21425 1.01971 1.36791 0.97017 0.92189 1.24907 0.95656 0.95727 0.97528 1.69924 1.22467 1.46404 1.14188 0.86439 0.81464 0.79738 0.79796 1.19755 1.20878 1.20776 1.21645 0.93400 0.83892 1.03535 1.19905 0.97955 0.86478 1.05018 1.28879 0.93884 0.94332 0.93091 1.81221 1.09196 1.11523 1.09265 1.84200 1.55344 1.09044 1.08484 0.91702 0.90703 0.91819 0.83270 0.84418 0.79763 0.94204 0.93059 0.92577 0.87859 0.90298 0.87905 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.47 37.15 0.35 -0.79 16 2 C 0.17 1.45 3.86 -68.87 -0.27 1.19 16 3 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 4 N -0.82 -6.77 9.21 -5.66 -0.05 -6.82 16 5 C -0.01 -0.12 6.23 -13.29 -0.08 -0.20 16 6 N -0.47 -6.04 10.28 -11.50 -0.12 -6.16 16 7 C 0.10 1.45 11.24 -18.85 -0.21 1.24 16 8 C -0.27 -4.00 5.70 -37.09 -0.21 -4.21 16 9 C 0.58 11.08 7.57 -12.85 -0.10 10.99 16 10 O -0.51 -11.88 16.59 5.20 0.09 -11.79 16 11 N -0.58 -10.75 2.46 -176.60 -0.43 -11.18 16 12 C 0.24 5.63 5.21 -5.19 -0.03 5.61 16 13 C -0.53 -13.90 9.39 -34.44 -0.32 -14.22 16 14 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -24.79 13.29 55.43 0.74 -24.06 16 17 Si 0.90 20.81 29.54 -169.99 -5.02 15.78 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C 0.10 1.42 4.87 -4.04 -0.02 1.40 16 22 C -0.05 -0.56 5.22 -29.52 -0.15 -0.72 16 23 C 0.22 2.56 15.43 -20.75 -0.32 2.24 16 24 N -0.43 -6.08 18.54 42.16 0.78 -5.30 16 25 S 0.17 1.92 17.26 -107.50 -1.86 0.06 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.35 3.04 8.80 -39.29 -0.35 2.69 16 30 H 0.34 2.56 9.06 -39.29 -0.36 2.21 16 31 H 0.19 2.57 8.06 -52.49 -0.42 2.15 16 32 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.05 1.35 7.37 -51.93 -0.38 0.96 16 34 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.10 1.46 8.10 -51.93 -0.42 1.04 16 36 H 0.08 1.01 4.70 -32.14 -0.15 0.86 16 37 H 0.10 1.00 6.45 -51.93 -0.33 0.67 16 38 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 345.57 15.07 5.21 5.21 Total: -1.00 -31.17 345.57 -6.62 -37.79 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -4.49 Total: 2.34 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -1.46 Total: 4.14 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.91 Total: -53.52 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -1.86 Total: 0.06 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.17 -6.62 -37.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160751391.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.762 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds