Wall clock time and date at job start Fri Apr 10 2020 22:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47141 * 2 1 4 4 N 1.46898 * 109.46976 * 120.00023 * 2 1 3 5 5 C 1.50702 * 109.47070 * 239.99753 * 2 1 3 6 6 N 1.29435 * 124.80367 * 285.02559 * 5 2 1 7 7 C 1.30939 * 117.36229 * 180.02562 * 6 5 2 8 8 C 1.35663 * 114.19229 * 359.97438 * 7 6 5 9 9 C 1.46685 * 126.13122 * 180.02562 * 8 7 6 10 10 O 1.21688 * 119.99710 * 325.47658 * 9 8 7 11 11 N 1.34772 * 119.99987 * 145.47810 * 9 8 7 12 12 C 1.46502 * 119.99687 * 183.80640 * 11 9 8 13 13 C 1.50702 * 109.47295 * 89.99911 * 12 11 9 14 14 H 1.08003 * 119.99662 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00020 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99894 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00086 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46979 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47080 * 120.00110 * 17 15 13 20 20 H 1.48499 * 109.47345 * 240.00551 * 17 15 13 21 21 C 1.46501 * 120.00304 * 3.80307 * 11 9 8 22 22 C 1.53003 * 109.47133 * 94.42457 * 21 11 9 23 23 C 1.47194 * 109.46843 * 180.02562 * 22 21 11 24 24 N 5.96881 * 96.41481 * 308.79295 * 2 1 3 25 25 S 1.70951 * 124.80291 * 105.02688 * 5 2 1 26 26 H 1.09004 * 109.47792 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47388 * 300.00470 * 1 2 3 28 28 H 1.09002 * 109.47421 * 59.99835 * 1 2 3 29 29 H 1.00898 * 111.00344 * 59.99988 * 4 2 1 30 30 H 1.00906 * 111.00231 * 183.95586 * 4 2 1 31 31 H 1.07995 * 122.90230 * 179.97438 * 7 6 5 32 32 H 1.09004 * 109.46925 * 209.99773 * 12 11 9 33 33 H 1.08998 * 109.47142 * 329.99597 * 12 11 9 34 34 H 0.96997 * 119.99559 * 179.97438 * 16 15 13 35 35 H 1.08992 * 109.47149 * 214.42788 * 21 11 9 36 36 H 1.09008 * 109.46876 * 334.42822 * 21 11 9 37 37 H 1.09000 * 109.47041 * 300.00293 * 22 21 11 38 38 H 1.09001 * 109.46364 * 60.00113 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0323 -0.7105 -1.2304 6 7 2.0187 -1.9936 -1.3999 7 6 2.4934 -2.4566 -2.5290 8 6 2.9412 -1.4982 -3.3784 9 6 3.5214 -1.7224 -4.7069 10 8 4.2018 -2.7097 -4.9149 11 7 3.3009 -0.8351 -5.6970 12 6 3.8100 -1.1002 -7.0449 13 6 2.7726 -1.8568 -7.8339 14 1 1.8287 -2.1148 -7.3768 15 6 3.0285 -2.2196 -9.1392 16 7 4.1781 -1.9059 -9.6956 17 14 1.7429 -3.1581 -10.1169 18 1 0.5457 -3.3869 -9.2687 19 1 1.3574 -2.3682 -11.3139 20 1 2.3034 -4.4648 -10.5455 21 6 2.5522 0.3945 -5.4254 22 6 3.5301 1.5272 -5.1064 23 6 2.7778 2.7624 -4.8329 24 7 2.1968 3.7161 -4.6231 25 16 2.7006 0.0643 -2.6000 26 1 -0.3635 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.6961 -1.6479 1.2228 30 1 3.0261 -0.6501 1.2559 31 1 2.5257 -3.5102 -2.7637 32 1 4.0278 -0.1555 -7.5433 33 1 4.7211 -1.6947 -6.9788 34 1 4.3583 -2.1615 -10.6137 35 1 1.9610 0.6609 -6.3014 36 1 1.8897 0.2360 -4.5744 37 1 4.1214 1.2607 -4.2303 38 1 4.1926 1.6856 -5.9573 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160751391.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:02:18 Heat of formation + Delta-G solvation = 15.811673 kcal Electronic energy + Delta-G solvation = -22742.604327 eV Core-core repulsion = 19325.238437 eV Total energy + Delta-G solvation = -3417.365890 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.105 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.34146 -40.44095 -38.11486 -36.87775 -36.76572 -34.92850 -32.39802 -31.57247 -30.03650 -29.15486 -27.05919 -25.53685 -25.13035 -23.37479 -21.73135 -19.71979 -19.53442 -18.84960 -18.40826 -17.79531 -17.58165 -16.85029 -16.59404 -16.19596 -16.01930 -15.77449 -15.58966 -15.20854 -14.95806 -14.66600 -14.37845 -14.24354 -13.72336 -13.68909 -13.29730 -13.12217 -13.03547 -12.89701 -12.85947 -12.66450 -12.58140 -12.30753 -12.25281 -12.19028 -11.71081 -11.22733 -10.85116 -10.61320 -10.43568 -10.02668 -9.82437 -9.62933 -8.21521 -6.33690 -0.79321 0.04586 0.47861 1.38669 1.39303 1.42315 1.51695 1.63581 1.75981 1.89573 2.22567 2.41289 2.86985 3.00846 3.11150 3.54910 3.67689 3.81194 3.81587 3.88845 4.12103 4.23206 4.27093 4.32008 4.64106 4.81196 4.85361 4.95173 4.98751 5.04643 5.26996 5.27727 5.48108 5.77785 6.01831 6.06519 6.41194 6.43450 6.51385 6.54952 6.73963 7.11907 7.37501 8.85845 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.016048 B = 0.004284 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.399502 B = 6534.978706 C = 7436.431354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.166 3.834 3 H 0.120 0.880 4 N -0.821 5.821 5 C 0.002 3.998 6 N -0.484 5.484 7 C 0.106 3.894 8 C -0.303 4.303 9 C 0.584 3.416 10 O -0.569 6.569 11 N -0.586 5.586 12 C 0.259 3.741 13 C -0.545 4.545 14 H 0.053 0.947 15 C 0.017 3.983 16 N -0.922 5.922 17 Si 0.958 3.042 18 H -0.270 1.270 19 H -0.272 1.272 20 H -0.284 1.284 21 C 0.099 3.901 22 C -0.042 4.042 23 C 0.241 3.759 24 N -0.464 5.464 25 S 0.233 5.767 26 H 0.053 0.947 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.352 0.648 30 H 0.349 0.651 31 H 0.179 0.821 32 H 0.046 0.954 33 H 0.012 0.988 34 H 0.267 0.733 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.120 0.880 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.314 7.549 17.827 19.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.050 3.950 3 H 0.138 0.862 4 N -0.350 5.350 5 C -0.274 4.274 6 N -0.198 5.198 7 C -0.051 4.051 8 C -0.427 4.427 9 C 0.370 3.630 10 O -0.450 6.450 11 N -0.315 5.315 12 C 0.139 3.861 13 C -0.584 4.584 14 H 0.071 0.929 15 C -0.183 4.183 16 N -0.561 5.561 17 Si 0.783 3.217 18 H -0.194 1.194 19 H -0.197 1.197 20 H -0.210 1.210 21 C -0.027 4.027 22 C -0.084 4.084 23 C -0.077 4.077 24 N -0.142 5.142 25 S 0.491 5.509 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.165 0.835 30 H 0.162 0.838 31 H 0.196 0.804 32 H 0.064 0.936 33 H 0.030 0.970 34 H 0.076 0.924 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.138 0.862 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.164 9.761 18.460 21.511 hybrid contribution 0.477 -2.931 -2.080 3.626 sum -4.687 6.829 16.381 18.356 Atomic orbital electron populations 1.21820 0.91565 1.02863 1.03549 1.20501 0.96998 0.97022 0.80455 0.86239 1.59138 1.17078 1.22796 1.36032 1.29720 1.00859 0.93699 1.03166 1.66138 1.19407 1.12981 1.21323 1.22127 0.94508 1.01355 0.87123 1.25685 1.16257 0.98961 1.01826 1.17175 0.80041 0.82835 0.82916 1.90804 1.40766 1.30298 1.83105 1.47960 1.53718 1.19512 1.10297 1.18978 0.93957 0.96744 0.76433 1.21722 1.02202 1.36933 0.97498 0.92909 1.25669 0.97430 0.96594 0.98641 1.70015 1.23986 1.47521 1.14595 0.85514 0.79168 0.78365 0.78655 1.19444 1.19715 1.20975 1.21835 0.93834 0.82811 1.04173 1.19814 0.97256 0.84963 1.06321 1.28733 0.93031 0.93847 0.92059 1.81264 1.10011 1.12441 1.10475 1.83849 1.54188 1.05663 1.07201 0.92762 0.89394 0.91419 0.83452 0.83798 0.80402 0.93601 0.96953 0.92399 0.88027 0.88895 0.86192 0.84660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.47 71.98 0.68 -1.18 16 2 C 0.17 2.34 3.86 44.17 0.17 2.51 16 3 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 4 N -0.82 -11.26 9.21 -171.81 -1.58 -12.85 16 5 C 0.00 0.05 6.23 88.46 0.55 0.60 16 6 N -0.48 -11.68 10.28 -190.30 -1.96 -13.64 16 7 C 0.11 3.01 11.24 84.23 0.95 3.96 16 8 C -0.30 -8.95 5.70 23.88 0.14 -8.81 16 9 C 0.58 22.66 7.57 86.45 0.65 23.32 16 10 O -0.57 -27.67 16.59 -4.31 -0.07 -27.74 16 11 N -0.59 -21.71 2.46 -830.85 -2.04 -23.75 16 12 C 0.26 12.27 5.21 85.63 0.45 12.71 16 13 C -0.54 -28.92 9.39 25.60 0.24 -28.68 16 14 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 15 C 0.02 0.89 5.46 84.65 0.46 1.35 16 16 N -0.92 -52.05 13.29 21.45 0.28 -51.77 16 17 Si 0.96 42.87 29.54 68.60 2.03 44.89 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 21 C 0.10 2.61 4.87 86.38 0.42 3.03 16 22 C -0.04 -0.83 5.22 28.79 0.15 -0.68 16 23 C 0.24 5.10 15.43 89.44 1.38 6.48 16 24 N -0.46 -11.92 18.54 20.01 0.37 -11.55 16 25 S 0.23 4.58 17.26 -56.49 -0.98 3.60 16 26 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 27 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.35 5.28 8.80 -89.70 -0.79 4.49 16 30 H 0.35 4.25 9.06 -89.69 -0.81 3.44 16 31 H 0.18 5.13 8.06 -2.91 -0.02 5.11 16 32 H 0.05 2.10 8.07 -2.38 -0.02 2.08 16 33 H 0.01 0.68 7.37 -2.39 -0.02 0.66 16 34 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 35 H 0.10 2.75 8.10 -2.39 -0.02 2.74 16 36 H 0.09 2.19 4.70 -14.97 -0.07 2.12 16 37 H 0.12 2.01 6.45 -2.39 -0.02 1.99 16 38 H 0.14 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -68.75 345.57 1.76 -66.99 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -0.54 Total: 11.20 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 6.24 Total: 14.61 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -4.92 Total: -113.56 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.07 Total: -27.74 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 4.58 SS G_CDS: -0.98 Total: 3.60 kcal Total: -68.75 1.76 -66.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160751391.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.800 kcal (2) G-P(sol) polarization free energy of solvation -68.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds