Wall clock time and date at job start Fri Apr 10 2020 22:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00108 * 2 1 4 4 H 1.48507 * 109.47030 * 271.94339 * 3 2 1 5 5 H 1.48501 * 109.47008 * 31.94038 * 3 2 1 6 6 H 1.48494 * 109.47136 * 151.94424 * 3 2 1 7 7 C 1.38812 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99741 * 339.48080 * 7 2 1 9 9 N 1.36932 * 120.00364 * 159.48555 * 7 2 1 10 10 C 1.47087 * 120.87964 * 333.51908 * 9 7 2 11 11 C 1.53235 * 108.51780 * 231.16000 * 10 9 7 12 12 N 1.46894 * 109.34427 * 306.16671 * 11 10 9 13 13 C 1.38556 * 111.00152 * 187.25329 * 12 11 10 14 14 C 1.39562 * 120.52442 * 0.02562 * 13 12 11 15 15 C 1.38274 * 118.32320 * 180.02562 * 14 13 12 16 16 Cl 1.73598 * 120.41796 * 179.97438 * 15 14 13 17 17 N 1.32693 * 119.17037 * 0.02562 * 15 14 13 18 18 C 1.31760 * 120.98529 * 359.97438 * 17 15 14 19 19 C 1.50698 * 119.07547 * 179.97438 * 18 17 15 20 20 C 1.53004 * 117.49467 * 299.99670 * 19 18 17 21 21 C 1.53010 * 60.02731 * 107.48033 * 20 19 18 22 22 N 1.31767 * 121.84501 * 0.25708 * 18 17 15 23 23 C 1.46903 * 111.26557 * 63.10782 * 12 11 10 24 24 C 1.47077 * 120.88743 * 153.49160 * 9 7 2 25 25 H 0.97003 * 119.99879 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.63087 * 111.45435 * 10 9 7 27 27 H 1.08996 * 109.62840 * 350.87016 * 10 9 7 28 28 H 1.09002 * 109.49064 * 186.20811 * 11 10 9 29 29 H 1.09005 * 109.49488 * 66.13256 * 11 10 9 30 30 H 1.07997 * 120.84058 * 0.03910 * 14 13 12 31 31 H 1.08996 * 115.55126 * 154.33251 * 19 18 17 32 32 H 1.08996 * 117.49578 * 214.97943 * 20 19 18 33 33 H 1.08994 * 117.50276 * 359.97438 * 20 19 18 34 34 H 1.08998 * 117.49339 * 107.50324 * 21 20 19 35 35 H 1.08996 * 117.49515 * 252.51286 * 21 20 19 36 36 H 1.09000 * 109.49617 * 56.85657 * 23 12 11 37 37 H 1.09004 * 109.49564 * 176.93592 * 23 12 11 38 38 H 1.09001 * 109.63543 * 248.55241 * 24 9 7 39 39 H 1.09005 * 109.62531 * 9.13370 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4566 2.0702 -1.3993 5 1 1.4688 2.6405 0.7407 6 1 3.5677 1.4286 0.6585 7 6 2.0102 -1.2021 -0.0005 8 1 1.5216 -2.1079 0.3269 9 7 3.3144 -1.2396 -0.4161 10 6 3.8316 -0.2466 -1.3700 11 6 4.5288 -0.9887 -2.5151 12 7 5.5375 -1.9014 -1.9606 13 6 6.2999 -2.4701 -2.9681 14 6 6.0599 -2.1501 -4.3051 15 6 6.8477 -2.7447 -5.2736 16 17 6.5960 -2.3862 -6.9534 17 7 7.7979 -3.5935 -4.9030 18 6 7.9984 -3.8742 -3.6313 19 6 9.0892 -4.8449 -3.2588 20 6 8.9901 -6.2666 -3.8157 21 6 10.0395 -5.3002 -4.3691 22 7 7.2684 -3.3340 -2.6766 23 6 4.9167 -2.9358 -1.1224 24 6 4.2355 -2.2735 0.0798 25 1 -0.4850 0.8401 0.0004 26 1 4.5460 0.4059 -0.8680 27 1 3.0064 0.3452 -1.7659 28 1 5.0133 -0.2681 -3.1738 29 1 3.7923 -1.5604 -3.0798 30 1 5.2789 -1.4554 -4.5766 31 1 9.5045 -4.7242 -2.2583 32 1 9.3406 -7.0809 -3.1817 33 1 8.1358 -6.4998 -4.4511 34 1 11.0802 -5.4791 -4.0992 35 1 9.8753 -4.8976 -5.3686 36 1 4.1748 -3.4804 -1.7064 37 1 5.6826 -3.6273 -0.7710 38 1 4.9887 -1.8158 0.7212 39 1 3.6772 -3.0218 0.6424 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271043504.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:03:21 Heat of formation + Delta-G solvation = 101.913701 kcal Electronic energy + Delta-G solvation = -23035.483927 eV Core-core repulsion = 19619.807994 eV Total energy + Delta-G solvation = -3415.675933 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.110 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.57481 -40.23373 -38.25218 -37.83373 -36.59421 -34.39250 -33.76884 -32.44675 -31.80289 -28.76219 -26.72067 -25.57325 -24.45492 -24.21463 -23.20463 -22.18495 -21.18727 -19.33645 -18.96620 -18.54435 -17.23888 -16.81636 -16.64379 -16.41759 -16.11948 -15.96459 -15.83690 -15.46399 -15.18525 -14.88852 -14.55456 -14.08008 -13.70670 -13.48166 -13.24132 -12.90734 -12.66423 -12.49763 -12.37704 -12.33353 -12.19314 -12.09133 -11.85764 -11.76381 -11.55113 -11.52428 -11.36971 -10.78323 -10.65157 -10.49522 -9.66697 -9.03316 -8.18216 -5.52399 -0.39481 -0.25227 0.41147 1.29009 1.43613 1.51588 1.96291 2.29029 2.39683 2.74345 3.00889 3.05487 3.23394 3.25549 3.49624 3.80611 3.86995 3.92739 3.97739 4.02923 4.11006 4.22587 4.24658 4.36076 4.37622 4.52843 4.61499 4.74085 4.81179 4.84151 4.90220 5.01679 5.12112 5.16531 5.33043 5.33959 5.70288 5.81206 5.88422 6.10397 6.83078 6.88822 7.55065 7.95930 9.01165 Molecular weight = 308.11amu Principal moments of inertia in cm(-1) A = 0.020062 B = 0.003798 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.350500 B = 7371.428794 C = 8280.169030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.031 4.031 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.312 1.312 6 H -0.264 1.264 7 C -0.252 4.252 8 H 0.057 0.943 9 N -0.622 5.622 10 C 0.124 3.876 11 C 0.044 3.956 12 N -0.471 5.471 13 C 0.378 3.622 14 C -0.273 4.273 15 C 0.241 3.759 16 Cl -0.001 7.001 17 N -0.547 5.547 18 C 0.388 3.612 19 C -0.121 4.121 20 C -0.143 4.143 21 C -0.139 4.139 22 N -0.547 5.547 23 C 0.066 3.934 24 C 0.148 3.852 25 H 0.263 0.737 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.109 0.891 29 H 0.059 0.941 30 H 0.172 0.828 31 H 0.141 0.859 32 H 0.128 0.872 33 H 0.084 0.916 34 H 0.126 0.874 35 H 0.097 0.903 36 H 0.041 0.959 37 H 0.104 0.896 38 H 0.042 0.958 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.777 -8.589 -11.567 24.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.226 4.226 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.241 1.241 6 H -0.189 1.189 7 C -0.381 4.381 8 H 0.075 0.925 9 N -0.347 5.347 10 C -0.001 4.001 11 C -0.084 4.084 12 N -0.186 5.186 13 C 0.137 3.863 14 C -0.300 4.300 15 C 0.070 3.930 16 Cl 0.028 6.972 17 N -0.267 5.267 18 C 0.121 3.879 19 C -0.141 4.141 20 C -0.181 4.181 21 C -0.177 4.177 22 N -0.266 5.266 23 C -0.060 4.060 24 C 0.023 3.977 25 H 0.072 0.928 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.127 0.873 29 H 0.077 0.923 30 H 0.190 0.810 31 H 0.159 0.841 32 H 0.146 0.854 33 H 0.103 0.897 34 H 0.144 0.856 35 H 0.116 0.884 36 H 0.060 0.940 37 H 0.122 0.878 38 H 0.060 0.940 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 20.524 -8.782 -11.071 24.918 hybrid contribution -1.484 1.464 -0.538 2.153 sum 19.040 -7.318 -11.609 23.470 Atomic orbital electron populations 1.69953 1.07393 1.27355 1.55275 1.25859 0.95788 1.00843 1.00096 0.86002 0.78529 0.80258 0.78129 1.19182 1.24062 1.18888 1.18852 0.86183 0.93845 1.39236 0.92503 1.44567 1.07856 1.33202 1.49041 1.21523 0.96564 0.92014 0.90025 1.22917 0.92182 0.95647 0.97608 1.58066 1.23859 1.18439 1.18248 1.20126 0.90462 0.87202 0.88508 1.22749 1.06034 1.09273 0.91964 1.21881 0.90832 0.91700 0.88584 1.98429 1.94829 1.92256 1.11677 1.67561 1.20368 1.18135 1.20674 1.22471 0.92057 0.91356 0.82062 1.20838 0.97309 0.94665 1.01320 1.23071 1.01596 0.90753 1.02685 1.23109 0.96421 1.00879 0.97282 1.67809 1.07476 1.12947 1.38417 1.22620 0.97405 0.91511 0.94481 1.21202 0.91811 0.91192 0.93535 0.92812 0.94160 0.91250 0.87329 0.92311 0.81031 0.84096 0.85414 0.89720 0.85598 0.88403 0.94028 0.87762 0.93978 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.35 13.97 21.65 0.30 -58.04 16 2 C -0.03 -1.73 5.24 84.86 0.44 -1.29 16 3 Si 0.94 44.66 24.30 68.60 1.67 46.32 16 4 H -0.27 -11.54 6.58 99.48 0.65 -10.89 16 5 H -0.31 -15.21 7.11 99.48 0.71 -14.50 16 6 H -0.26 -12.18 6.61 99.48 0.66 -11.52 16 7 C -0.25 -13.76 10.08 84.03 0.85 -12.92 16 8 H 0.06 3.39 8.05 -2.91 -0.02 3.37 16 9 N -0.62 -28.04 2.82 -698.13 -1.97 -30.00 16 10 C 0.12 4.95 4.35 86.35 0.38 5.32 16 11 C 0.04 1.40 4.30 86.38 0.37 1.78 16 12 N -0.47 -14.88 4.69 -700.41 -3.29 -18.16 16 13 C 0.38 11.15 6.47 133.14 0.86 12.01 16 14 C -0.27 -7.12 8.70 22.60 0.20 -6.93 16 15 C 0.24 6.10 7.33 84.57 0.62 6.72 16 16 Cl 0.00 -0.01 29.15 -2.72 -0.08 -0.09 16 17 N -0.55 -14.19 9.34 -179.03 -1.67 -15.86 16 18 C 0.39 10.00 7.31 138.77 1.01 11.02 16 19 C -0.12 -2.26 6.24 -11.52 -0.07 -2.33 16 20 C -0.14 -2.06 10.23 30.60 0.31 -1.75 16 21 C -0.14 -1.97 10.01 30.62 0.31 -1.67 16 22 N -0.55 -15.89 9.63 -185.48 -1.79 -17.68 16 23 C 0.07 2.11 5.51 86.38 0.48 2.59 16 24 C 0.15 5.48 6.69 86.35 0.58 6.06 16 25 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 26 H 0.04 1.60 6.94 -2.39 -0.02 1.59 16 27 H 0.07 2.98 4.60 -2.39 -0.01 2.97 16 28 H 0.11 2.81 6.90 -2.39 -0.02 2.79 16 29 H 0.06 1.88 7.84 -2.38 -0.02 1.86 16 30 H 0.17 3.92 5.94 -2.91 -0.02 3.90 16 31 H 0.14 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.10 1.67 7.54 -2.39 -0.02 1.65 16 36 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 37 H 0.10 3.03 7.57 -2.39 -0.02 3.01 16 38 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.08 2.77 7.95 -2.38 -0.02 2.75 16 Total: -1.00 -64.90 327.15 0.49 -64.42 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.97 Total: 10.48 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 6.33 Total: 18.62 kcal Atomic # 7 Polarization: -131.34 SS G_CDS: -8.41 Total: -139.74 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.67 Total: 46.32 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -0.08 Total: -0.09 kcal Total: -64.90 0.49 -64.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271043504.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.329 kcal (2) G-P(sol) polarization free energy of solvation -64.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds