Wall clock time and date at job start Fri Apr 10 2020 22:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35910 * 116.99962 * 2 1 4 4 C 1.38726 * 120.04514 * 359.97438 * 3 2 1 5 5 C 1.38244 * 119.92780 * 179.72153 * 4 3 2 6 6 Cl 1.73603 * 119.98208 * 179.97438 * 5 4 3 7 7 C 1.38403 * 120.03205 * 0.02562 * 5 4 3 8 8 C 1.38227 * 120.09728 * 359.97340 * 7 5 4 9 9 C 1.38173 * 120.06575 * 0.04769 * 8 7 5 10 10 C 1.50701 * 120.01348 * 180.02562 * 9 8 7 11 11 N 1.46899 * 109.47037 * 254.82217 * 10 9 8 12 12 C 1.46903 * 111.00235 * 75.50520 * 11 10 9 13 13 C 1.50696 * 109.47401 * 190.00349 * 12 11 10 14 14 H 1.08005 * 120.00279 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00044 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00052 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00053 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47157 * 59.99425 * 17 15 13 19 19 H 1.48495 * 109.47511 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47097 * 299.99640 * 17 15 13 21 21 C 1.46898 * 111.00272 * 199.46390 * 11 10 9 22 22 C 1.52993 * 109.47639 * 75.82205 * 21 11 10 23 23 C 1.47197 * 109.47515 * 174.87270 * 22 21 11 24 24 N 6.00739 * 115.52908 * 188.77292 * 2 1 3 25 25 H 1.08995 * 109.47209 * 300.00224 * 1 2 3 26 26 H 1.09004 * 109.46943 * 60.00354 * 1 2 3 27 27 H 1.08996 * 109.46839 * 179.97438 * 1 2 3 28 28 H 1.08007 * 120.03941 * 359.70402 * 4 3 2 29 29 H 1.07993 * 119.94903 * 179.97438 * 7 5 4 30 30 H 1.07995 * 119.96452 * 180.02562 * 8 7 5 31 31 H 1.08996 * 109.47266 * 14.81794 * 10 9 8 32 32 H 1.08998 * 109.47499 * 134.81960 * 10 9 8 33 33 H 1.09000 * 109.46739 * 310.00293 * 12 11 10 34 34 H 1.09003 * 109.47042 * 69.99868 * 12 11 10 35 35 H 0.97003 * 119.99668 * 180.02562 * 16 15 13 36 36 H 1.09006 * 109.47101 * 195.82800 * 21 11 10 37 37 H 1.09006 * 109.47040 * 315.82158 * 21 11 10 38 38 H 1.09001 * 109.46948 * 294.87435 * 22 21 11 39 39 H 1.08998 * 109.47165 * 54.86980 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2913 2.3750 -0.0005 5 6 1.9215 3.6055 0.0053 6 17 0.9785 5.0631 0.0040 7 6 3.3037 3.6759 0.0111 8 6 4.0568 2.5168 0.0117 9 6 3.4312 1.2848 0.0054 10 6 4.2534 0.0218 0.0066 11 7 4.2236 -0.5831 -1.3317 12 6 5.0875 0.1552 -2.2626 13 6 4.8467 -0.3344 -3.6673 14 1 4.1243 -1.1162 -3.8503 15 6 5.5492 0.2150 -4.7188 16 7 6.4291 1.1666 -4.4959 17 14 5.2511 -0.3924 -6.4599 18 1 3.8286 -0.1717 -6.8245 19 1 6.1243 0.3539 -7.4009 20 1 5.5630 -1.8422 -6.5387 21 6 4.6002 -2.0019 -1.2767 22 6 3.4322 -2.8185 -0.7202 23 6 3.7630 -4.2516 -0.7796 24 7 4.0180 -5.3574 -0.8268 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2127 2.3201 -0.0058 29 1 3.7945 4.6378 0.0152 30 1 5.1352 2.5742 0.0166 31 1 5.2828 0.2587 0.2754 32 1 3.8408 -0.6797 0.7317 33 1 4.8585 1.2193 -2.2044 34 1 6.1318 -0.0068 -1.9953 35 1 6.9231 1.5533 -5.2358 36 1 4.8434 -2.3525 -2.2798 37 1 5.4688 -2.1224 -0.6292 38 1 3.2482 -2.5307 0.3149 39 1 2.5390 -2.6269 -1.3148 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280316217.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:03:34 Heat of formation + Delta-G solvation = -7.678026 kcal Electronic energy + Delta-G solvation = -22972.407385 eV Core-core repulsion = 19519.686448 eV Total energy + Delta-G solvation = -3452.720938 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 308.103 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.16667 -38.86025 -38.37489 -37.47792 -37.01142 -34.70034 -33.08745 -31.60843 -31.11182 -28.91680 -27.97871 -26.29088 -24.78572 -23.17919 -22.81571 -21.39213 -18.95320 -18.56769 -18.26441 -17.30759 -16.84888 -16.58306 -16.51783 -16.11592 -15.91335 -15.51028 -15.10131 -14.82937 -14.67224 -14.32186 -14.10810 -14.00267 -13.78407 -13.40879 -13.37061 -13.10881 -12.76533 -12.72485 -12.65663 -12.48852 -12.29194 -12.18500 -11.97739 -11.87536 -11.67100 -11.64432 -11.43357 -11.14573 -10.52328 -9.70477 -9.00264 -8.87826 -8.12169 -6.18653 0.21691 0.49259 1.15405 1.44433 1.45187 1.52371 1.81487 1.89150 2.44458 2.52253 2.69472 3.09227 3.22068 3.71851 3.88161 3.98080 4.17295 4.25318 4.27511 4.45003 4.53116 4.57228 4.57760 4.70608 4.75855 4.78799 4.91083 4.96736 5.11743 5.18899 5.19570 5.31810 5.41452 5.44246 5.55518 5.75161 5.78395 6.17285 6.43391 6.56140 6.65757 6.75548 6.98120 7.49788 8.98020 Molecular weight = 308.10amu Principal moments of inertia in cm(-1) A = 0.009565 B = 0.005268 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2926.514224 B = 5314.210939 C = 7220.592673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.302 6.302 3 C 0.163 3.837 4 C -0.210 4.210 5 C -0.006 4.006 6 Cl -0.069 7.069 7 C -0.158 4.158 8 C -0.070 4.070 9 C -0.109 4.109 10 C 0.099 3.901 11 N -0.522 5.522 12 C 0.211 3.789 13 C -0.514 4.514 14 H 0.064 0.936 15 C 0.006 3.994 16 N -0.931 5.931 17 Si 0.952 3.048 18 H -0.270 1.270 19 H -0.288 1.288 20 H -0.272 1.272 21 C 0.067 3.933 22 C -0.007 4.007 23 C 0.243 3.757 24 N -0.502 5.502 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.122 0.878 28 H 0.154 0.846 29 H 0.141 0.859 30 H 0.134 0.866 31 H 0.035 0.965 32 H 0.105 0.895 33 H 0.015 0.985 34 H -0.037 1.037 35 H 0.261 0.739 36 H 0.064 0.936 37 H 0.036 0.964 38 H 0.134 0.866 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.324 3.326 13.028 18.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.215 6.215 3 C 0.115 3.885 4 C -0.230 4.230 5 C -0.033 4.033 6 Cl -0.041 7.041 7 C -0.177 4.177 8 C -0.089 4.089 9 C -0.110 4.110 10 C -0.029 4.029 11 N -0.245 5.245 12 C 0.085 3.915 13 C -0.553 4.553 14 H 0.083 0.917 15 C -0.192 4.192 16 N -0.572 5.572 17 Si 0.778 3.222 18 H -0.196 1.196 19 H -0.214 1.214 20 H -0.197 1.197 21 C -0.063 4.063 22 C -0.047 4.047 23 C -0.074 4.074 24 N -0.181 5.181 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.141 0.859 28 H 0.172 0.828 29 H 0.159 0.841 30 H 0.152 0.848 31 H 0.053 0.947 32 H 0.123 0.877 33 H 0.033 0.967 34 H -0.020 1.020 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.054 0.946 38 H 0.152 0.848 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.315 1.726 12.693 17.769 hybrid contribution 0.792 0.794 -1.002 1.504 sum -11.523 2.520 11.691 16.607 Atomic orbital electron populations 1.23351 0.77115 1.05682 1.01715 1.86145 1.22530 1.25072 1.87710 1.18570 0.91186 0.84567 0.94130 1.21195 1.01369 0.90292 1.10100 1.20682 0.91828 0.87372 1.03413 1.98348 1.72674 1.36134 1.96898 1.21024 0.91795 0.99738 1.05098 1.21006 1.00376 0.90940 0.96580 1.19371 0.91432 0.95765 1.04452 1.20959 0.96704 0.93565 0.91631 1.61890 1.54267 1.01190 1.07192 1.19357 0.88238 0.93432 0.90450 1.21476 1.21325 1.20061 0.92402 0.91749 1.25718 0.95191 0.95403 1.02882 1.70054 1.26650 1.27693 1.32829 0.85694 0.78158 0.78382 0.79930 1.19554 1.21382 1.19722 1.21813 0.94908 0.88575 1.01020 1.19341 1.00606 0.78533 1.06196 1.29658 0.91442 0.95314 0.90958 1.81183 1.10699 1.14793 1.11407 0.91532 0.92856 0.85937 0.82817 0.84082 0.84778 0.94725 0.87723 0.96720 1.01950 0.93051 0.91705 0.94604 0.84832 0.85457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.35 16 2 O -0.30 -6.93 9.83 -92.54 -0.91 -7.84 16 3 C 0.16 4.37 6.66 22.50 0.15 4.52 16 4 C -0.21 -5.20 8.82 22.39 0.20 -5.00 16 5 C -0.01 -0.16 6.32 22.31 0.14 -0.02 16 6 Cl -0.07 -1.59 28.95 -2.72 -0.08 -1.67 16 7 C -0.16 -4.30 9.83 22.31 0.22 -4.09 16 8 C -0.07 -2.08 8.99 22.25 0.20 -1.88 16 9 C -0.11 -3.24 4.82 -19.77 -0.10 -3.34 16 10 C 0.10 2.90 4.55 85.56 0.39 3.29 16 11 N -0.52 -18.72 4.35 -905.38 -3.94 -22.65 16 12 C 0.21 10.12 4.55 85.56 0.39 10.51 16 13 C -0.51 -27.18 8.23 25.60 0.21 -26.97 16 14 H 0.06 3.32 7.31 -2.91 -0.02 3.30 16 15 C 0.01 0.33 5.46 84.65 0.46 0.80 16 16 N -0.93 -54.23 13.29 21.45 0.28 -53.94 16 17 Si 0.95 43.50 29.54 68.60 2.03 45.52 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 C 0.07 2.10 4.75 86.30 0.41 2.51 16 22 C -0.01 -0.15 5.75 28.79 0.17 0.02 16 23 C 0.24 6.59 15.43 89.44 1.38 7.97 16 24 N -0.50 -16.48 18.54 20.00 0.37 -16.11 16 25 H 0.07 0.77 7.67 -2.39 -0.02 0.75 16 26 H 0.05 0.82 7.66 -2.39 -0.02 0.80 16 27 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.15 3.03 6.30 -2.91 -0.02 3.01 16 29 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 30 H 0.13 3.87 8.00 -2.91 -0.02 3.84 16 31 H 0.03 1.04 7.81 -2.39 -0.02 1.03 16 32 H 0.10 2.42 6.43 -2.39 -0.02 2.41 16 33 H 0.01 0.77 6.87 -2.39 -0.02 0.75 16 34 H -0.04 -1.96 8.12 -2.39 -0.02 -1.98 16 35 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 36 H 0.06 2.45 6.57 -2.38 -0.02 2.43 16 37 H 0.04 1.08 8.00 -2.38 -0.02 1.06 16 38 H 0.13 2.22 6.90 -2.39 -0.02 2.20 16 39 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -65.57 350.06 4.16 -61.41 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: 1.07 Total: 5.61 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 5.33 Total: -10.34 kcal Atomic # 7 Polarization: -89.43 SS G_CDS: -3.28 Total: -92.71 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.91 Total: -7.84 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.08 Total: -1.67 kcal Total: -65.57 4.16 -61.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280316217.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.734 kcal (2) G-P(sol) polarization free energy of solvation -65.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds