Wall clock time and date at job start Fri Apr 10 2020 22:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38174 * 119.97062 * 2 1 4 4 C 1.38711 * 119.94106 * 179.76717 * 3 2 1 5 5 O 1.35905 * 120.05104 * 180.25607 * 4 3 2 6 6 C 1.42904 * 116.99539 * 180.23057 * 5 4 3 7 7 C 1.50699 * 109.46811 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00356 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99602 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99693 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47104 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.47040 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00146 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99591 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99593 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 120.00439 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47111 * 89.99983 * 16 14 12 18 18 H 1.48501 * 109.47089 * 210.00095 * 16 14 12 19 19 H 1.48499 * 109.46631 * 329.99858 * 16 14 12 20 20 C 1.38753 * 119.89074 * 0.47993 * 4 3 2 21 21 C 1.38119 * 119.94003 * 359.77263 * 20 4 3 22 22 C 1.38237 * 119.97355 * 180.26964 * 2 1 3 23 23 N 1.48004 * 119.94647 * 359.97438 * 22 2 1 24 24 O 1.21792 * 120.00477 * 173.49195 * 23 22 2 25 25 O 1.21808 * 119.99444 * 353.48371 * 23 22 2 26 26 H 1.08996 * 109.47817 * 262.78984 * 1 2 3 27 27 H 1.09009 * 109.46984 * 142.78763 * 1 2 3 28 28 H 1.09008 * 109.47277 * 22.79219 * 1 2 3 29 29 H 1.07995 * 120.02529 * 359.97438 * 3 2 1 30 30 H 1.08993 * 109.46986 * 299.99813 * 6 5 4 31 31 H 1.09004 * 109.46956 * 59.99603 * 6 5 4 32 32 H 0.96998 * 120.00498 * 0.02562 * 9 7 6 33 33 H 1.09007 * 109.47313 * 300.00174 * 10 9 7 34 34 H 1.08997 * 109.47691 * 60.00092 * 10 9 7 35 35 H 1.09001 * 109.46752 * 299.99369 * 11 10 9 36 36 H 1.08992 * 109.47420 * 59.99690 * 11 10 9 37 37 H 0.97000 * 119.99910 * 180.02562 * 15 14 12 38 38 H 1.07998 * 120.02894 * 179.74871 * 20 4 3 39 39 H 1.08005 * 119.96722 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1970 0.0000 4 6 3.5843 1.1963 0.0049 5 8 4.2655 2.3723 0.0102 6 6 5.6924 2.2954 0.0099 7 6 6.2704 3.6871 0.0155 8 8 5.5330 4.6500 0.0198 9 7 7.6068 3.8617 0.0167 10 6 8.1687 5.2147 0.0227 11 6 9.6965 5.1324 0.0223 12 6 10.2745 6.5242 0.0291 13 1 9.6179 7.3816 0.0329 14 6 11.6417 6.7028 0.0305 15 7 12.1461 7.9174 0.0359 16 14 12.7775 5.2198 0.0246 17 1 13.0791 4.8328 -1.3770 18 1 14.0408 5.5610 0.7267 19 1 12.1154 4.0866 0.7196 20 6 4.2752 -0.0070 -0.0003 21 6 3.5805 -1.2008 -0.0056 22 6 2.1976 -1.1975 -0.0056 23 7 1.4558 -2.4782 -0.0111 24 8 2.0572 -3.5299 -0.1356 25 8 0.2436 -2.4803 0.1091 26 1 -0.3634 -0.1290 1.0195 27 1 -0.3633 -0.8185 -0.6216 28 1 -0.3634 0.9475 -0.3981 29 1 1.6572 2.1322 -0.0004 30 1 6.0275 1.7589 0.8974 31 1 6.0276 1.7666 -0.8825 32 1 8.1966 3.0917 0.0136 33 1 7.8338 5.7512 -0.8651 34 1 7.8333 5.7435 0.9148 35 1 10.0317 4.5959 0.9099 36 1 10.0317 4.6037 -0.8700 37 1 13.1079 8.0431 0.0365 38 1 5.3552 -0.0102 -0.0006 39 1 4.1178 -2.1377 -0.0101 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281251145.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:03:45 Heat of formation + Delta-G solvation = -76.483830 kcal Electronic energy + Delta-G solvation = -23653.257617 eV Core-core repulsion = 19756.843872 eV Total energy + Delta-G solvation = -3896.413746 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.125 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.27987 -41.73580 -40.57418 -38.88360 -37.70934 -36.67513 -34.83567 -33.88750 -32.74137 -32.15646 -29.96080 -28.56346 -26.76969 -26.43868 -23.85271 -23.16390 -22.60376 -21.69433 -20.06495 -19.71617 -19.37859 -18.94548 -18.63336 -18.28101 -17.62590 -17.12501 -16.52136 -16.25231 -16.20774 -15.82844 -15.18529 -15.09378 -14.75480 -14.62149 -14.56641 -14.52708 -13.92957 -13.61984 -13.37732 -13.34547 -13.03877 -12.49617 -12.39925 -12.38119 -12.22315 -12.19782 -12.15937 -11.75493 -11.71478 -11.52025 -10.99093 -10.78758 -10.27228 -10.14973 -9.90519 -8.29686 -6.37577 -1.16701 -0.14525 0.29257 0.44118 1.32414 1.40231 1.43274 1.47276 1.54119 2.16297 2.37412 2.49747 3.05722 3.25961 3.34013 3.47189 3.62034 3.82634 3.98664 4.02106 4.04441 4.28308 4.33898 4.41823 4.51037 4.61939 4.66353 4.74350 4.79984 4.90871 5.04007 5.08371 5.09601 5.38526 5.40991 5.46272 5.62460 5.91370 6.21476 6.51220 6.56663 6.71211 7.17368 7.27191 8.87063 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.034403 B = 0.002033 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.688041 B =13772.593537 C =14553.785392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.024 3.976 3 C -0.164 4.164 4 C 0.189 3.811 5 O -0.301 6.301 6 C 0.038 3.962 7 C 0.505 3.495 8 O -0.580 6.580 9 N -0.706 5.706 10 C 0.145 3.855 11 C -0.013 4.013 12 C -0.541 4.541 13 H 0.026 0.974 14 C 0.000 4.000 15 N -0.952 5.952 16 Si 0.961 3.039 17 H -0.265 1.265 18 H -0.291 1.291 19 H -0.231 1.231 20 C -0.206 4.206 21 C -0.005 4.005 22 C -0.110 4.110 23 N 0.041 4.959 24 O -0.200 6.200 25 O -0.176 6.176 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.163 0.837 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.420 0.580 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.041 0.959 36 H 0.040 0.960 37 H 0.267 0.733 38 H 0.189 0.811 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.413 -23.486 -0.040 29.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.022 3.978 3 C -0.183 4.183 4 C 0.141 3.859 5 O -0.212 6.212 6 C -0.039 4.039 7 C 0.291 3.709 8 O -0.459 6.459 9 N -0.360 5.360 10 C 0.021 3.979 11 C -0.051 4.051 12 C -0.579 4.579 13 H 0.045 0.955 14 C -0.197 4.197 15 N -0.592 5.592 16 Si 0.783 3.217 17 H -0.190 1.190 18 H -0.217 1.217 19 H -0.153 1.153 20 C -0.225 4.225 21 C -0.024 4.024 22 C -0.195 4.195 23 N 0.551 4.449 24 O -0.408 6.408 25 O -0.388 6.388 26 H 0.115 0.885 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.180 0.820 30 H 0.158 0.842 31 H 0.158 0.842 32 H 0.258 0.742 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.206 0.794 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -17.492 -21.928 -0.034 28.050 hybrid contribution 0.850 -0.325 -0.016 0.910 sum -16.642 -22.253 -0.050 27.787 Atomic orbital electron populations 1.21377 0.87274 1.05361 1.05015 1.19754 0.98700 0.89207 0.90136 1.20498 0.91260 0.98628 1.07938 1.19534 0.92109 0.85095 0.89189 1.86210 1.20384 1.27934 1.86622 1.22902 0.78207 0.94445 1.08308 1.20720 0.82596 0.91373 0.76191 1.90755 1.60261 1.44188 1.50685 1.45835 1.06038 1.10110 1.73995 1.21059 0.94366 0.82342 1.00151 1.19662 0.91106 0.95869 0.98434 1.21280 0.92366 0.92720 1.51574 0.95514 1.26144 1.00268 0.99529 0.93712 1.70087 1.13154 1.24004 1.51957 0.85511 0.77339 0.79526 0.79298 1.19036 1.21694 1.15329 1.21609 1.03117 0.89154 1.08580 1.21060 0.90112 1.01269 0.89951 1.21059 0.93211 0.82458 1.22773 1.43733 1.01047 1.03182 0.96925 1.94519 1.70208 1.21008 1.55037 1.94456 0.96897 1.93992 1.53491 0.88543 0.89053 0.88742 0.81974 0.84182 0.84173 0.74187 0.93705 0.93696 0.94073 0.94216 0.92402 0.79359 0.80980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 8.67 71.23 0.62 -0.97 16 2 C 0.02 0.34 5.88 -19.88 -0.12 0.23 16 3 C -0.16 -2.30 9.61 22.37 0.22 -2.08 16 4 C 0.19 2.57 6.69 22.51 0.15 2.72 16 5 O -0.30 -5.42 9.67 -73.45 -0.71 -6.13 16 6 C 0.04 0.47 5.22 71.24 0.37 0.85 16 7 C 0.50 12.63 7.91 87.66 0.69 13.32 16 8 O -0.58 -21.54 16.50 16.01 0.26 -21.27 16 9 N -0.71 -17.25 5.56 -463.06 -2.57 -19.82 16 10 C 0.14 5.25 5.61 86.38 0.48 5.74 16 11 C -0.01 -0.52 4.16 29.85 0.12 -0.40 16 12 C -0.54 -29.47 9.66 25.60 0.25 -29.22 16 13 H 0.03 1.65 7.99 -2.91 -0.02 1.63 16 14 C 0.00 0.02 5.47 84.65 0.46 0.49 16 15 N -0.95 -57.95 13.96 21.45 0.30 -57.65 16 16 Si 0.96 39.97 27.47 68.60 1.88 41.85 16 17 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 18 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.23 -8.20 6.54 99.48 0.65 -7.55 16 20 C -0.21 -1.77 9.04 22.36 0.20 -1.57 16 21 C 0.00 -0.06 9.55 22.25 0.21 0.16 16 22 C -0.11 -1.80 6.83 36.39 0.25 -1.55 16 23 N 0.04 0.87 4.45 -46.44 -0.21 0.66 16 24 O -0.20 -4.59 18.46 18.90 0.35 -4.24 16 25 O -0.18 -3.85 15.35 18.88 0.29 -3.56 16 26 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.09 1.28 5.87 -2.38 -0.01 1.26 16 28 H 0.09 0.76 8.03 -2.38 -0.02 0.74 16 29 H 0.16 2.00 8.05 -2.91 -0.02 1.97 16 30 H 0.14 0.65 7.66 -2.39 -0.02 0.64 16 31 H 0.14 0.65 7.66 -2.38 -0.02 0.63 16 32 H 0.42 6.54 8.47 -92.71 -0.79 5.75 16 33 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.04 1.53 7.20 -2.39 -0.02 1.51 16 36 H 0.04 1.45 7.57 -2.39 -0.02 1.44 16 37 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 38 H 0.19 0.19 6.30 -2.91 -0.02 0.17 16 39 H 0.17 1.37 7.62 -2.91 -0.02 1.35 16 Total: -1.00 -79.10 341.63 3.77 -75.33 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 0.26 Total: 7.12 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 3.91 Total: -12.29 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -2.48 Total: -76.81 kcal Atomic # 8 Polarization: -35.40 SS G_CDS: 0.19 Total: -35.21 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 1.88 Total: 41.85 kcal Total: -79.10 3.77 -75.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281251145.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.153 kcal (2) G-P(sol) polarization free energy of solvation -79.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds