Wall clock time and date at job start Fri Apr 10 2020 22:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36270 * 120.06280 * 2 1 4 4 C 1.39912 * 120.12429 * 180.02562 * 3 2 1 5 5 C 1.48004 * 119.88323 * 180.02562 * 4 3 2 6 6 C 1.39753 * 120.06078 * 359.97438 * 5 4 3 7 7 C 1.38083 * 120.20455 * 179.97438 * 6 5 4 8 8 C 1.38049 * 120.32867 * 359.97438 * 7 6 5 9 9 C 1.39953 * 120.11734 * 0.02562 * 8 7 6 10 10 C 1.47202 * 120.10341 * 179.97438 * 9 8 7 11 11 C 1.34906 * 119.99879 * 0.02562 * 10 9 8 12 12 C 1.46242 * 120.00143 * 179.97438 * 11 10 9 13 13 O 1.21622 * 119.99648 * 0.02562 * 12 11 10 14 14 O 1.34903 * 120.00102 * 179.97438 * 12 11 10 15 15 C 1.39271 * 120.06309 * 179.69774 * 5 4 3 16 16 C 1.39946 * 120.23368 * 0.02562 * 4 3 2 17 17 C 1.36242 * 120.12854 * 359.97438 * 16 4 3 18 18 C 1.40914 * 120.06024 * 180.02562 * 2 1 3 19 19 C 1.41031 * 120.11794 * 0.25233 * 18 2 1 20 20 H 1.08006 * 120.00111 * 329.33963 * 19 18 2 21 21 C 1.40013 * 120.00196 * 149.34240 * 19 18 2 22 22 N 1.30791 * 119.99746 * 162.15586 * 21 19 18 23 23 Si 1.86800 * 119.99768 * 342.15638 * 21 19 18 24 24 H 1.48497 * 109.47113 * 95.38766 * 23 21 19 25 25 H 1.48500 * 109.47128 * 215.38634 * 23 21 19 26 26 H 1.48502 * 109.47293 * 335.38929 * 23 21 19 27 27 H 1.09001 * 109.47207 * 269.97965 * 1 2 3 28 28 H 1.09004 * 109.47393 * 29.97736 * 1 2 3 29 29 H 1.09001 * 109.47697 * 149.97945 * 1 2 3 30 30 H 1.08002 * 119.94124 * 0.04436 * 3 2 1 31 31 H 1.08000 * 119.89686 * 359.97438 * 6 5 4 32 32 H 1.08002 * 119.83678 * 179.97438 * 7 6 5 33 33 H 1.08003 * 119.94144 * 179.97438 * 8 7 6 34 34 H 1.07992 * 119.99843 * 179.97438 * 10 9 8 35 35 H 1.08005 * 119.99976 * 359.97438 * 11 10 9 36 36 H 0.96701 * 113.99600 * 180.02562 * 14 12 11 37 37 H 1.07998 * 120.15827 * 0.02877 * 15 5 4 38 38 H 1.08004 * 119.93483 * 180.02562 * 16 4 3 39 39 H 1.07993 * 120.06126 * 179.97438 * 17 16 4 40 40 H 0.97004 * 119.99573 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1896 1.1794 0.0000 4 6 3.5887 1.1809 -0.0005 5 6 4.3247 2.4649 0.0000 6 6 3.6235 3.6738 0.0006 7 6 4.3072 4.8735 0.0017 8 6 5.6876 4.8892 0.0027 9 6 6.4035 3.6866 0.0022 10 6 7.8754 3.7037 0.0028 11 6 8.5363 4.8798 0.0043 12 6 9.9987 4.8968 0.0055 13 8 10.6189 3.8506 0.0046 14 8 10.6595 6.0729 0.0065 15 6 5.7174 2.4708 0.0059 16 6 4.2947 -0.0275 -0.0016 17 6 3.6222 -1.2124 -0.0016 18 6 2.2128 -1.2196 -0.0005 19 6 1.5115 -2.4432 -0.0065 20 1 0.5430 -2.5128 0.4666 21 6 2.0706 -3.5676 -0.6256 22 7 1.6163 -4.7618 -0.3458 23 14 3.4652 -3.3622 -1.8512 24 1 4.7651 -3.5477 -1.1576 25 1 3.3303 -4.3750 -2.9289 26 1 3.4090 -2.0007 -2.4415 27 1 -0.3634 -0.0004 1.0277 28 1 -0.3634 0.8902 -0.5135 29 1 -0.3634 -0.8898 -0.5141 30 1 1.6496 2.1147 0.0007 31 1 2.5435 3.6696 0.0002 32 1 3.7593 5.8042 0.0016 33 1 6.2160 5.8311 0.0031 34 1 8.4262 2.7748 0.0028 35 1 7.9855 5.8088 0.0048 36 1 11.6224 5.9829 0.0068 37 1 6.2639 1.5393 0.0095 38 1 5.3747 -0.0207 -0.0016 39 1 4.1681 -2.1442 -0.0029 40 1 2.0040 -5.5408 -0.7744 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240549708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:03:46 Heat of formation + Delta-G solvation = -47.010369 kcal Electronic energy + Delta-G solvation = -23052.381672 eV Core-core repulsion = 19568.095254 eV Total energy + Delta-G solvation = -3484.286418 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 308.120 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.30873 -39.33446 -37.93771 -36.33695 -34.57583 -33.71045 -32.37655 -31.18148 -30.29481 -29.01973 -26.54386 -25.21052 -24.67086 -22.46972 -22.21532 -20.98877 -19.76758 -18.77957 -18.41500 -17.61430 -17.18255 -16.43489 -15.72320 -15.63560 -15.11241 -14.87006 -14.17619 -14.06418 -13.75847 -13.52002 -13.26207 -13.11408 -12.84619 -12.66821 -12.52354 -12.32525 -11.90442 -11.83146 -11.59775 -11.44516 -11.12847 -10.99715 -10.92390 -10.79851 -10.74124 -10.43631 -10.22244 -9.93710 -9.66367 -9.32952 -8.83720 -8.33001 -7.78603 -7.27173 -7.18612 -4.63188 0.36565 1.36750 1.85769 2.54029 2.62084 2.91204 2.99893 3.02005 3.11851 3.20914 3.82256 4.01161 4.48679 4.69854 4.76771 5.03375 5.16366 5.20736 5.24639 5.36475 5.51424 5.59184 5.81148 5.84925 5.93812 6.01876 6.13687 6.16377 6.22856 6.25645 6.38929 6.49360 6.50844 6.63270 6.66820 6.72177 6.78109 6.88918 6.97902 7.14650 7.35387 7.52902 7.64650 7.65991 7.73975 7.93948 8.12722 8.46363 8.57304 9.80814 Molecular weight = 308.12amu Principal moments of inertia in cm(-1) A = 0.018069 B = 0.003028 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.240269 B = 9244.768966 C =10599.953410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.184 4.184 3 C -0.053 4.053 4 C -0.207 4.207 5 C 0.018 3.982 6 C -0.123 4.123 7 C -0.114 4.114 8 C -0.131 4.131 9 C -0.084 4.084 10 C 0.022 3.978 11 C -0.224 4.224 12 C 0.512 3.488 13 O -0.525 6.525 14 O -0.507 6.507 15 C -0.111 4.111 16 C -0.053 4.053 17 C -0.240 4.240 18 C 0.100 3.900 19 C -0.423 4.423 20 H 0.097 0.903 21 C 0.082 3.918 22 N -0.791 5.791 23 Si 0.913 3.087 24 H -0.268 1.268 25 H -0.288 1.288 26 H -0.241 1.241 27 H 0.046 0.954 28 H 0.042 0.958 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.407 0.593 37 H 0.126 0.874 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.108 15.219 -0.654 17.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.185 4.185 3 C -0.072 4.072 4 C -0.208 4.208 5 C 0.018 3.982 6 C -0.141 4.141 7 C -0.132 4.132 8 C -0.149 4.149 9 C -0.084 4.084 10 C 0.003 3.997 11 C -0.243 4.243 12 C 0.358 3.642 13 O -0.417 6.417 14 O -0.317 6.317 15 C -0.128 4.128 16 C -0.071 4.071 17 C -0.259 4.259 18 C 0.097 3.903 19 C -0.450 4.450 20 H 0.115 0.885 21 C -0.140 4.140 22 N -0.413 5.413 23 Si 0.739 3.261 24 H -0.194 1.194 25 H -0.216 1.216 26 H -0.164 1.164 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.153 0.847 35 H 0.159 0.841 36 H 0.264 0.736 37 H 0.144 0.856 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.761 14.676 -0.661 16.615 hybrid contribution 1.274 -0.200 -0.443 1.364 sum 9.036 14.476 -1.104 17.100 Atomic orbital electron populations 1.20463 0.92781 1.01091 1.00290 1.19444 0.94884 0.92562 1.11604 1.20338 0.92716 0.96387 0.97725 1.17977 0.92608 0.90316 1.19900 1.18899 0.92144 0.93167 0.93982 1.21417 1.00125 0.91667 1.00885 1.20913 0.93979 0.97782 1.00538 1.21197 0.94234 0.96749 1.02744 1.18749 0.91226 0.93964 1.04489 1.22612 0.93025 0.98113 0.85927 1.22032 0.89517 1.00292 1.12425 1.21046 0.89974 0.80983 0.72154 1.90942 1.70115 1.33566 1.47032 1.85056 1.26152 1.34348 1.86180 1.21459 0.93961 0.96690 1.00736 1.20439 0.97550 0.92239 0.96856 1.20714 0.94595 0.96500 1.14058 1.17695 0.91316 0.92785 0.88526 1.19641 1.05171 0.91398 1.28800 0.88466 1.26315 0.96961 0.94156 0.96573 1.69670 1.37786 0.99462 1.34428 0.86259 0.80064 0.80157 0.79623 1.19357 1.21574 1.16429 0.93486 0.93945 0.91563 0.88338 0.85859 0.86251 0.86205 0.84693 0.84148 0.73643 0.85596 0.88492 0.87978 0.89968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 9.41 36.00 0.34 -1.34 16 2 C -0.18 -3.97 5.90 -104.32 -0.62 -4.58 16 3 C -0.05 -1.06 8.99 -39.66 -0.36 -1.42 16 4 C -0.21 -4.09 5.90 -104.63 -0.62 -4.71 16 5 C 0.02 0.31 5.87 -104.94 -0.62 -0.31 16 6 C -0.12 -1.82 9.42 -39.07 -0.37 -2.19 16 7 C -0.11 -1.43 10.01 -39.71 -0.40 -1.83 16 8 C -0.13 -1.60 9.41 -39.01 -0.37 -1.97 16 9 C -0.08 -1.13 5.86 -105.10 -0.62 -1.75 16 10 C 0.02 0.26 9.46 -37.13 -0.35 -0.09 16 11 C -0.22 -2.41 9.53 -37.55 -0.36 -2.77 16 12 C 0.51 5.79 8.23 33.95 0.28 6.07 16 13 O -0.53 -7.51 16.96 -19.36 -0.33 -7.84 16 14 O -0.51 -4.30 13.56 -41.05 -0.56 -4.85 16 15 C -0.11 -1.71 9.17 -38.69 -0.35 -2.06 16 16 C -0.05 -1.09 9.35 -39.66 -0.37 -1.46 16 17 C -0.24 -5.47 7.08 -39.28 -0.28 -5.75 16 18 C 0.10 2.38 5.10 -106.80 -0.54 1.84 16 19 C -0.42 -10.58 8.50 -37.86 -0.32 -10.90 16 20 H 0.10 2.52 7.22 -52.48 -0.38 2.14 16 21 C 0.08 2.00 5.40 -17.33 -0.09 1.90 16 22 N -0.79 -19.71 13.93 55.55 0.77 -18.94 16 23 Si 0.91 19.73 24.51 -169.99 -4.17 15.56 16 24 H -0.27 -5.64 6.71 56.52 0.38 -5.26 16 25 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.24 -5.39 6.86 56.52 0.39 -5.01 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.04 0.68 8.08 -51.93 -0.42 0.27 16 29 H 0.07 1.29 6.84 -51.93 -0.36 0.94 16 30 H 0.10 1.68 6.16 -52.49 -0.32 1.36 16 31 H 0.12 1.69 6.16 -52.49 -0.32 1.37 16 32 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 33 H 0.12 1.15 6.15 -52.48 -0.32 0.82 16 34 H 0.14 1.62 7.52 -52.49 -0.39 1.22 16 35 H 0.14 1.26 6.07 -52.48 -0.32 0.94 16 36 H 0.41 1.70 8.98 45.56 0.41 2.11 16 37 H 0.13 1.85 6.17 -52.49 -0.32 1.53 16 38 H 0.10 1.76 6.17 -52.48 -0.32 1.44 16 39 H 0.10 2.32 4.78 -52.49 -0.25 2.07 16 40 H 0.29 6.52 8.30 -40.82 -0.34 6.18 16 LS Contribution 337.07 15.07 5.08 5.08 Total: -1.00 -28.08 337.07 -8.55 -36.63 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -3.34 Total: 7.66 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: -6.01 Total: -33.31 kcal Atomic # 7 Polarization: -19.71 SS G_CDS: 0.77 Total: -18.94 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -0.88 Total: -12.69 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.17 Total: 15.56 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.08 -8.55 -36.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240549708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.377 kcal (2) G-P(sol) polarization free energy of solvation -28.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds