Wall clock time and date at job start Fri Apr 10 2020 22:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34640 * 116.99519 * 2 1 4 4 O 1.21509 * 120.00750 * 0.02562 * 3 2 1 5 5 N 1.34779 * 119.99732 * 179.97438 * 3 2 1 6 6 C 1.46500 * 120.00066 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47195 * 180.02562 * 6 5 3 8 8 C 1.50691 * 109.47304 * 180.02562 * 7 6 5 9 9 O 1.21290 * 119.99983 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00340 * 180.02562 * 8 7 6 11 11 C 1.39924 * 120.00457 * 175.49244 * 10 8 7 12 12 C 1.38968 * 120.03773 * 214.84643 * 11 10 8 13 13 C 1.38155 * 120.06606 * 179.71324 * 12 11 10 14 14 C 1.38164 * 120.13851 * 0.56061 * 13 12 11 15 15 C 1.38908 * 120.07372 * 359.71168 * 14 13 12 16 16 O 1.35749 * 120.03567 * 179.97438 * 15 14 13 17 17 C 1.34836 * 117.00019 * 5.37193 * 16 15 14 18 18 H 1.07996 * 119.99803 * 354.96312 * 17 16 15 19 19 C 1.38652 * 120.00259 * 174.95934 * 17 16 15 20 20 N 1.31551 * 120.00068 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99598 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.46944 * 90.00257 * 21 19 17 23 23 H 1.48509 * 109.46959 * 209.99784 * 21 19 17 24 24 H 1.48500 * 109.47452 * 329.99808 * 21 19 17 25 25 C 1.38714 * 120.03440 * 35.11293 * 11 10 8 26 26 H 1.09004 * 109.47272 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47550 * 299.99476 * 1 2 3 28 28 H 1.09006 * 109.47613 * 59.99341 * 1 2 3 29 29 H 0.96999 * 119.99939 * 0.02562 * 5 3 2 30 30 H 1.09005 * 109.46997 * 60.00453 * 6 5 3 31 31 H 1.08999 * 109.47278 * 300.00347 * 6 5 3 32 32 H 1.08999 * 109.47142 * 300.00248 * 7 6 5 33 33 H 1.09005 * 109.46927 * 60.00228 * 7 6 5 34 34 H 0.97001 * 120.00157 * 355.48319 * 10 8 7 35 35 H 1.08000 * 119.95941 * 359.97438 * 12 11 10 36 36 H 1.07997 * 119.92938 * 180.25204 * 13 12 11 37 37 H 1.07999 * 119.96303 * 179.74652 * 14 13 12 38 38 H 0.97003 * 120.00091 * 179.97438 * 20 19 17 39 39 H 1.07999 * 120.07090 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0631 1.1997 0.0000 4 8 1.4014 2.2188 0.0005 5 7 3.4091 1.2703 0.0005 6 6 4.0741 2.5756 0.0011 7 6 5.5909 2.3752 0.0010 8 6 6.2751 3.7179 0.0022 9 8 5.6145 4.7351 0.0026 10 7 7.6210 3.7885 0.0018 11 6 8.2564 5.0316 -0.0923 12 6 9.4545 5.1496 -0.7864 13 6 10.0794 6.3779 -0.8848 14 6 9.5216 7.4900 -0.2839 15 6 8.3271 7.3775 0.4161 16 8 7.7800 8.4707 1.0065 17 6 8.3855 9.6545 0.7831 18 1 9.3100 9.6916 0.2261 19 6 7.8212 10.8244 1.2684 20 7 8.4116 11.9794 1.0500 21 14 6.2224 10.7601 2.2324 22 1 6.5221 10.5984 3.6779 23 1 5.4663 12.0208 2.0217 24 1 5.4077 9.6102 1.7641 25 6 7.6939 6.1464 0.5118 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 3.9374 0.4568 0.0005 30 1 3.7809 3.1324 0.8912 31 1 3.7815 3.1329 -0.8888 32 1 5.8839 1.8178 0.8907 33 1 5.8838 1.8186 -0.8893 34 1 8.1492 2.9776 0.0668 35 1 9.8953 4.2811 -1.2530 36 1 11.0083 6.4679 -1.4282 37 1 10.0146 8.4480 -0.3591 38 1 8.0166 12.7979 1.3891 39 1 6.7648 6.0565 1.0551 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490983607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:03:45 Heat of formation + Delta-G solvation = -109.193397 kcal Electronic energy + Delta-G solvation = -23973.292890 eV Core-core repulsion = 20075.460751 eV Total energy + Delta-G solvation = -3897.832139 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.125 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.76145 -40.32068 -38.85116 -37.25173 -36.68977 -35.44464 -34.24570 -32.35828 -31.62488 -29.64564 -28.69130 -27.76480 -25.26016 -24.53827 -22.38676 -21.64509 -21.27738 -20.36420 -19.08663 -18.09110 -17.74845 -17.35943 -16.96589 -16.69748 -16.01212 -15.65395 -15.23077 -14.99090 -14.66066 -14.45131 -14.26142 -13.85916 -13.72790 -13.64349 -13.30767 -12.84918 -12.43688 -12.39346 -12.30139 -12.26128 -11.94812 -11.63029 -11.23655 -11.09352 -11.00268 -10.92660 -10.83771 -10.21692 -9.94028 -9.73768 -9.56181 -9.29486 -8.84571 -7.85181 -7.33569 -6.39170 -4.05899 1.77890 1.87468 2.20838 2.52735 2.66635 3.06791 3.28373 3.30460 3.49155 3.91987 4.28793 4.29183 4.45584 4.59776 4.66728 4.80541 4.88578 4.91653 5.03897 5.13940 5.15421 5.49814 5.54285 5.58589 5.68781 5.88850 6.00320 6.03514 6.09287 6.24911 6.46905 6.74323 6.89971 7.01328 7.09658 7.31102 7.51593 7.56514 7.81635 8.00243 8.04216 8.16932 8.96271 9.58819 10.68062 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.015237 B = 0.002803 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.168332 B = 9987.477576 C =11689.163757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.375 6.375 3 C 0.644 3.356 4 O -0.565 6.565 5 N -0.710 5.710 6 C 0.149 3.851 7 C -0.151 4.151 8 C 0.510 3.490 9 O -0.506 6.506 10 N -0.667 5.667 11 C 0.171 3.829 12 C -0.227 4.227 13 C -0.060 4.060 14 C -0.231 4.231 15 C 0.172 3.828 16 O -0.213 6.213 17 C -0.389 4.389 18 H 0.108 0.892 19 C 0.065 3.935 20 N -0.879 5.879 21 Si 0.902 3.098 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.257 1.257 25 C -0.187 4.187 26 H 0.102 0.898 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.406 0.594 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.407 0.593 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.134 0.866 38 H 0.279 0.721 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.986 -26.714 -2.510 27.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.289 6.289 3 C 0.397 3.603 4 O -0.452 6.452 5 N -0.370 5.370 6 C 0.026 3.974 7 C -0.191 4.191 8 C 0.296 3.704 9 O -0.379 6.379 10 N -0.313 5.313 11 C 0.078 3.922 12 C -0.248 4.248 13 C -0.079 4.079 14 C -0.251 4.251 15 C 0.119 3.881 16 O -0.117 6.117 17 C -0.464 4.464 18 H 0.125 0.875 19 C -0.139 4.139 20 N -0.516 5.516 21 Si 0.728 3.272 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.180 1.180 25 C -0.208 4.208 26 H 0.121 0.879 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.241 0.759 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.242 0.758 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.152 0.848 38 H 0.090 0.910 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.140 -25.229 -2.336 26.324 hybrid contribution -0.036 -0.580 0.327 0.667 sum -7.177 -25.809 -2.008 26.863 Atomic orbital electron populations 1.23211 0.74192 1.03465 1.02949 1.86221 1.24386 1.31096 1.87193 1.18107 0.83385 0.82244 0.76598 1.91060 1.64505 1.34833 1.54836 1.44582 1.03156 1.10569 1.78696 1.21080 0.89082 0.82157 1.05068 1.21771 0.95339 0.96436 1.05589 1.20331 0.82248 0.91057 0.76748 1.90844 1.64153 1.36439 1.46487 1.43328 1.06408 1.08352 1.73182 1.17148 0.93217 0.84304 0.97569 1.20335 0.98468 0.98181 1.07802 1.20563 0.98318 0.91735 0.97282 1.21314 0.98373 1.00101 1.05312 1.18881 0.91138 0.87409 0.90666 1.83586 1.51566 1.14264 1.62295 1.20781 1.08290 0.80377 1.36991 0.87514 1.24457 0.98988 0.93481 0.96962 1.69642 1.39800 0.97757 1.44445 0.86214 0.82573 0.78264 0.80169 1.19872 1.20763 1.18040 1.20171 1.03194 0.90258 1.07199 0.87931 0.91734 0.91746 0.75923 0.89758 0.89782 0.87726 0.87695 0.75761 0.87158 0.86717 0.84802 0.91041 0.84812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.37 10.56 101.05 1.07 1.44 16 2 O -0.38 -3.41 10.62 -40.32 -0.43 -3.84 16 3 C 0.64 7.27 8.75 54.06 0.47 7.75 16 4 O -0.56 -8.67 16.13 -19.28 -0.31 -8.98 16 5 N -0.71 -5.84 5.56 -65.28 -0.36 -6.20 16 6 C 0.15 1.46 4.96 -4.04 -0.02 1.44 16 7 C -0.15 -1.04 5.82 -27.89 -0.16 -1.20 16 8 C 0.51 6.41 7.67 -10.99 -0.08 6.33 16 9 O -0.51 -9.15 13.42 5.55 0.07 -9.08 16 10 N -0.67 -7.99 5.34 -9.88 -0.05 -8.04 16 11 C 0.17 2.89 6.30 -83.72 -0.53 2.36 16 12 C -0.23 -3.57 9.96 -39.34 -0.39 -3.96 16 13 C -0.06 -1.05 10.03 -39.64 -0.40 -1.45 16 14 C -0.23 -4.99 9.17 -39.36 -0.36 -5.35 16 15 C 0.17 4.12 6.64 -39.13 -0.26 3.86 16 16 O -0.21 -5.83 8.58 0.04 0.00 -5.83 16 17 C -0.39 -11.17 9.95 30.89 0.31 -10.87 16 18 H 0.11 3.09 5.43 -52.49 -0.29 2.81 16 19 C 0.06 1.85 5.49 -17.52 -0.10 1.76 16 20 N -0.88 -25.73 13.96 55.48 0.77 -24.96 16 21 Si 0.90 22.50 28.62 -169.99 -4.86 17.63 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.26 -6.58 7.11 56.52 0.40 -6.18 16 25 C -0.19 -3.98 8.64 -39.21 -0.34 -4.32 16 26 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.41 1.92 8.58 -40.82 -0.35 1.57 16 30 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 31 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 32 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.41 3.02 8.82 -40.82 -0.36 2.66 16 35 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.13 3.01 5.63 -52.49 -0.30 2.72 16 38 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.13 3.00 6.23 -52.49 -0.33 2.67 16 LS Contribution 343.51 15.07 5.18 5.18 Total: -1.00 -36.83 343.51 -5.34 -42.16 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -4.55 Total: 4.17 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -0.79 Total: -2.22 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.36 Total: -39.20 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.66 Total: -27.73 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.86 Total: 17.63 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.83 -5.34 -42.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490983607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.031 kcal (2) G-P(sol) polarization free energy of solvation -36.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds