Wall clock time and date at job start Fri Apr 10 2020 22:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27760 * 3 2 1 5 5 H 1.48505 * 109.47234 * 0.27769 * 3 2 1 6 6 H 1.48492 * 109.47124 * 120.27784 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46684 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.46684 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99873 * 179.97438 * 12 11 10 14 14 O 1.21284 * 119.99754 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00137 * 180.02562 * 13 12 11 16 16 H 1.09000 * 109.67851 * 54.47953 * 15 13 12 17 17 C 1.53406 * 109.68380 * 293.91998 * 15 13 12 18 18 C 1.53069 * 108.30323 * 175.56337 * 17 15 13 19 19 C 1.50775 * 109.68300 * 48.21576 * 18 17 15 20 20 C 1.38527 * 118.73405 * 162.39855 * 19 18 17 21 21 C 1.38064 * 120.35227 * 179.56931 * 20 19 18 22 22 C 1.38525 * 119.95434 * 0.03891 * 21 20 19 23 23 F 1.35093 * 120.04582 * 180.02562 * 22 21 20 24 24 C 1.38181 * 119.90224 * 0.07421 * 22 21 20 25 25 C 1.38399 * 121.39805 * 342.14810 * 19 18 17 26 26 O 1.35851 * 121.79664 * 0.53300 * 25 19 18 27 27 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 28 28 H 0.96999 * 120.00331 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.47212 * 300.00262 * 10 9 7 30 30 H 1.09001 * 109.46577 * 60.00336 * 10 9 7 31 31 H 1.09000 * 109.47486 * 300.00065 * 11 10 9 32 32 H 1.09001 * 109.47362 * 60.00788 * 11 10 9 33 33 H 0.96999 * 120.00080 * 0.02562 * 12 11 10 34 34 H 1.08998 * 109.70400 * 295.25821 * 17 15 13 35 35 H 1.08999 * 109.69713 * 55.86104 * 17 15 13 36 36 H 1.09003 * 109.43082 * 288.15353 * 18 17 15 37 37 H 1.08996 * 109.43168 * 168.28368 * 18 17 15 38 38 H 1.07997 * 119.82045 * 359.59496 * 20 19 18 39 39 H 1.08000 * 120.02199 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.90073 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.0989 1.6993 -1.2159 5 1 1.2853 2.7465 0.0068 6 1 3.1090 1.6934 1.2090 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 1.0636 -4.8197 -0.0109 12 7 1.7961 -6.0884 -0.0159 13 6 1.1222 -7.2556 -0.0158 14 8 -0.0906 -7.2555 -0.0120 15 6 1.8756 -8.5607 -0.0204 16 1 2.5782 -8.5819 0.8127 17 6 2.6370 -8.7132 -1.3434 18 6 3.4768 -9.9908 -1.2703 19 6 2.6246 -11.1309 -0.7729 20 6 3.0637 -12.4288 -0.9770 21 6 2.3141 -13.4976 -0.5274 22 6 1.1159 -13.2740 0.1308 23 9 0.3813 -14.3184 0.5718 24 6 0.6728 -11.9812 0.3346 25 6 1.4266 -10.9034 -0.1184 26 8 0.9562 -9.6474 0.0977 27 1 -0.4850 0.8400 0.0040 28 1 0.3555 -2.3880 -0.0021 29 1 2.6812 -3.7126 -0.9040 30 1 2.6880 -3.7165 0.8760 31 1 0.4400 -4.7641 0.8814 32 1 0.4339 -4.7598 -0.8986 33 1 2.7661 -6.0885 -0.0186 34 1 1.9287 -8.7860 -2.1687 35 1 3.2893 -7.8528 -1.4931 36 1 4.3119 -9.8372 -0.5869 37 1 3.8599 -10.2302 -2.2622 38 1 3.9974 -12.6055 -1.4900 39 1 2.6617 -14.5073 -0.6890 40 1 -0.2616 -11.8069 0.8474 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131337989.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:02:37 Heat of formation + Delta-G solvation = -84.898104 kcal Electronic energy + Delta-G solvation = -24016.111739 eV Core-core repulsion = 20131.705913 eV Total energy + Delta-G solvation = -3884.405827 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.25415 -41.33495 -39.50332 -37.56584 -35.75122 -34.83414 -33.87099 -31.56585 -30.92345 -30.62505 -28.08325 -26.35933 -24.28486 -23.62175 -23.19769 -21.62291 -21.23569 -20.24926 -18.72753 -17.94276 -17.22054 -17.18961 -16.28387 -16.24381 -15.94109 -15.60505 -15.41578 -15.09132 -14.71202 -14.60658 -14.35798 -14.06745 -13.84505 -13.50135 -13.39925 -13.24882 -13.21239 -12.91679 -12.26960 -11.84818 -11.59278 -11.58518 -11.45494 -11.16646 -11.02190 -10.87910 -10.82999 -10.19035 -9.91621 -9.73245 -9.17549 -9.09244 -8.91984 -8.61806 -7.04306 -5.83163 -3.14501 0.68271 0.85345 2.26162 2.46572 3.09439 3.34641 3.40105 3.44731 3.46061 3.98111 4.05906 4.20484 4.21610 4.37443 4.52344 4.55654 4.60578 4.71991 4.79142 5.00612 5.03836 5.28129 5.32600 5.42593 5.45324 5.52293 5.60570 5.65635 5.70109 5.76836 5.88069 5.93418 6.06122 6.28751 6.35430 6.62494 6.62880 6.94034 7.41620 7.61337 8.11433 8.34129 9.45369 9.99455 10.33942 11.39179 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.043782 B = 0.002069 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.382475 B =13532.622716 C =14047.144965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.911 3.089 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.247 4.247 8 H 0.071 0.929 9 N -0.729 5.729 10 C 0.145 3.855 11 C 0.112 3.888 12 N -0.716 5.716 13 C 0.518 3.482 14 O -0.515 6.515 15 C 0.076 3.924 16 H 0.102 0.898 17 C -0.151 4.151 18 C -0.075 4.075 19 C -0.174 4.174 20 C -0.054 4.054 21 C -0.187 4.187 22 C 0.132 3.868 23 F -0.135 7.135 24 C -0.184 4.184 25 C 0.167 3.833 26 O -0.283 6.283 27 H 0.258 0.742 28 H 0.387 0.613 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.401 0.599 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.739 -27.610 -2.057 29.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.017 3.983 11 C -0.011 4.011 12 N -0.369 5.369 13 C 0.301 3.699 14 O -0.389 6.389 15 C 0.016 3.984 16 H 0.119 0.881 17 C -0.189 4.189 18 C -0.111 4.111 19 C -0.175 4.175 20 C -0.072 4.072 21 C -0.206 4.206 22 C 0.113 3.887 23 F -0.113 7.113 24 C -0.203 4.203 25 C 0.121 3.879 26 O -0.195 6.195 27 H 0.067 0.933 28 H 0.220 0.780 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.235 0.765 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.720 -27.426 -1.988 28.847 hybrid contribution 0.628 0.730 0.064 0.965 sum 9.348 -26.696 -1.923 28.350 Atomic orbital electron populations 1.69657 1.05158 1.26044 1.56910 1.24797 0.95584 0.97874 1.02549 0.86212 0.78491 0.83245 0.77860 1.21172 1.21593 1.21168 1.19132 0.90993 0.83817 1.43800 0.91056 1.42178 1.06025 0.99510 1.89748 1.20751 0.93427 0.85629 0.98495 1.21648 0.95497 0.81064 1.02917 1.45759 1.10470 1.05520 1.75200 1.19787 0.88120 0.84386 0.77611 1.90777 1.13458 1.87090 1.47571 1.22319 0.90751 0.85387 0.99952 0.88052 1.22254 1.00224 0.99628 0.96824 1.20497 0.96953 0.91090 1.02607 1.19919 0.97014 0.96211 1.04323 1.20728 0.99018 0.90399 0.97074 1.21016 0.95156 1.00760 1.03635 1.17230 0.90752 0.83240 0.97525 1.91519 1.76452 1.56033 1.87325 1.20448 1.03670 0.89359 1.06832 1.18326 0.92095 0.84186 0.93338 1.86092 1.36726 1.11524 1.85203 0.93252 0.77956 0.95735 0.95723 0.90987 0.90979 0.76534 0.89377 0.88499 0.89687 0.89118 0.84564 0.84509 0.83666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.25 -6.75 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -18.07 5.60 -59.90 -0.34 -18.41 16 10 C 0.15 2.69 6.37 -4.04 -0.03 2.66 16 11 C 0.11 1.81 5.79 -4.04 -0.02 1.79 16 12 N -0.72 -8.79 5.52 -60.29 -0.33 -9.12 16 13 C 0.52 7.07 7.18 -10.99 -0.08 6.99 16 14 O -0.51 -9.62 16.52 -14.20 -0.23 -9.85 16 15 C 0.08 0.76 3.21 -27.67 -0.09 0.67 16 16 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 17 C -0.15 -1.10 5.46 -26.49 -0.14 -1.24 16 18 C -0.07 -0.42 5.86 -27.81 -0.16 -0.59 16 19 C -0.17 -1.40 5.75 -104.42 -0.60 -2.00 16 20 C -0.05 -0.36 9.66 -39.54 -0.38 -0.74 16 21 C -0.19 -1.39 10.03 -39.54 -0.40 -1.78 16 22 C 0.13 1.25 7.30 -39.50 -0.29 0.96 16 23 F -0.13 -1.36 17.27 2.25 0.04 -1.32 16 24 C -0.18 -1.91 9.91 -39.28 -0.39 -2.30 16 25 C 0.17 1.77 6.47 -39.20 -0.25 1.51 16 26 O -0.28 -3.57 9.47 -39.02 -0.37 -3.94 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.39 10.19 7.67 -40.82 -0.31 9.88 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.40 3.50 8.32 -40.82 -0.34 3.16 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.50 7.97 -51.93 -0.41 0.09 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.14 0.52 8.06 -52.49 -0.42 0.09 16 39 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 40 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 346.19 15.07 5.22 5.22 Total: -1.00 -34.24 346.19 -8.66 -42.90 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.26 Total: 6.16 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -3.08 Total: -1.38 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.06 Total: -54.73 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.60 Total: -13.80 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.24 -8.66 -42.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131337989.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.001 kcal (2) G-P(sol) polarization free energy of solvation -34.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds