Wall clock time and date at job start Fri Apr 10 2020 22:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27760 * 3 2 1 5 5 H 1.48505 * 109.47234 * 0.27769 * 3 2 1 6 6 H 1.48492 * 109.47124 * 120.27784 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.46506 * 119.99589 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46684 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.46684 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99873 * 179.97438 * 12 11 10 14 14 O 1.21284 * 119.99754 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00137 * 180.02562 * 13 12 11 16 16 H 1.09000 * 109.67851 * 54.47953 * 15 13 12 17 17 C 1.53406 * 109.68380 * 293.91998 * 15 13 12 18 18 C 1.53069 * 108.30323 * 175.56337 * 17 15 13 19 19 C 1.50775 * 109.68300 * 48.21576 * 18 17 15 20 20 C 1.38527 * 118.73405 * 162.39855 * 19 18 17 21 21 C 1.38064 * 120.35227 * 179.56931 * 20 19 18 22 22 C 1.38525 * 119.95434 * 0.03891 * 21 20 19 23 23 F 1.35093 * 120.04582 * 180.02562 * 22 21 20 24 24 C 1.38181 * 119.90224 * 0.07421 * 22 21 20 25 25 C 1.38399 * 121.39805 * 342.14810 * 19 18 17 26 26 O 1.35851 * 121.79664 * 0.53300 * 25 19 18 27 27 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 28 28 H 0.96999 * 120.00331 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.47212 * 300.00262 * 10 9 7 30 30 H 1.09001 * 109.46577 * 60.00336 * 10 9 7 31 31 H 1.09000 * 109.47486 * 300.00065 * 11 10 9 32 32 H 1.09001 * 109.47362 * 60.00788 * 11 10 9 33 33 H 0.96999 * 120.00080 * 0.02562 * 12 11 10 34 34 H 1.08998 * 109.70400 * 295.25821 * 17 15 13 35 35 H 1.08999 * 109.69713 * 55.86104 * 17 15 13 36 36 H 1.09003 * 109.43082 * 288.15353 * 18 17 15 37 37 H 1.08996 * 109.43168 * 168.28368 * 18 17 15 38 38 H 1.07997 * 119.82045 * 359.59496 * 20 19 18 39 39 H 1.08000 * 120.02199 * 180.02562 * 21 20 19 40 40 H 1.08000 * 119.90073 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.0989 1.6993 -1.2159 5 1 1.2853 2.7465 0.0068 6 1 3.1090 1.6934 1.2090 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 2.0579 -3.6568 -0.0115 11 6 1.0636 -4.8197 -0.0109 12 7 1.7961 -6.0884 -0.0159 13 6 1.1222 -7.2556 -0.0158 14 8 -0.0906 -7.2555 -0.0120 15 6 1.8756 -8.5607 -0.0204 16 1 2.5782 -8.5819 0.8127 17 6 2.6370 -8.7132 -1.3434 18 6 3.4768 -9.9908 -1.2703 19 6 2.6246 -11.1309 -0.7729 20 6 3.0637 -12.4288 -0.9770 21 6 2.3141 -13.4976 -0.5274 22 6 1.1159 -13.2740 0.1308 23 9 0.3813 -14.3184 0.5718 24 6 0.6728 -11.9812 0.3346 25 6 1.4266 -10.9034 -0.1184 26 8 0.9562 -9.6474 0.0977 27 1 -0.4850 0.8400 0.0040 28 1 0.3555 -2.3880 -0.0021 29 1 2.6812 -3.7126 -0.9040 30 1 2.6880 -3.7165 0.8760 31 1 0.4400 -4.7641 0.8814 32 1 0.4339 -4.7598 -0.8986 33 1 2.7661 -6.0885 -0.0186 34 1 1.9287 -8.7860 -2.1687 35 1 3.2893 -7.8528 -1.4931 36 1 4.3119 -9.8372 -0.5869 37 1 3.8599 -10.2302 -2.2622 38 1 3.9974 -12.6055 -1.4900 39 1 2.6617 -14.5073 -0.6890 40 1 -0.2616 -11.8069 0.8474 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131337989.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:02:35 Heat of formation + Delta-G solvation = -108.214094 kcal Electronic energy + Delta-G solvation = -24017.122796 eV Core-core repulsion = 20131.705913 eV Total energy + Delta-G solvation = -3885.416884 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -49.98379 -42.09839 -40.54844 -38.32662 -37.29513 -35.74480 -35.19959 -33.22016 -31.80343 -31.36895 -29.50804 -27.32028 -25.43398 -24.90546 -23.81832 -23.15691 -22.19383 -21.05199 -19.51272 -19.32370 -18.70404 -17.94019 -17.16513 -17.07049 -16.78610 -16.70586 -16.48860 -16.36868 -15.83636 -15.58431 -15.38113 -15.12256 -14.98802 -14.75684 -14.55107 -14.29233 -14.03971 -13.90204 -13.10824 -13.03870 -12.93844 -12.63093 -12.54950 -12.39894 -12.24530 -12.11886 -12.05137 -11.86166 -11.67016 -10.97066 -10.93245 -10.26112 -9.81653 -9.26751 -9.05878 -7.95988 -5.27477 0.05001 0.21592 1.34760 1.41706 1.49979 1.53033 1.59272 2.36277 2.52129 2.60553 3.33176 3.38331 3.42657 3.45900 3.64159 3.76269 3.86352 3.98590 4.00664 4.11077 4.15971 4.20814 4.22164 4.43892 4.51497 4.58528 4.80637 4.93783 4.98684 5.00291 5.05517 5.12019 5.13816 5.17710 5.28217 5.36181 5.49550 5.67859 6.21352 6.24485 6.44217 7.08183 7.30726 8.03132 8.25050 9.27451 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.043782 B = 0.002069 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.382475 B =13532.622716 C =14047.144965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.980 3.020 4 H -0.274 1.274 5 H -0.299 1.299 6 H -0.275 1.275 7 C -0.247 4.247 8 H 0.086 0.914 9 N -0.749 5.749 10 C 0.149 3.851 11 C 0.128 3.872 12 N -0.697 5.697 13 C 0.516 3.484 14 O -0.575 6.575 15 C 0.079 3.921 16 H 0.133 0.867 17 C -0.147 4.147 18 C -0.070 4.070 19 C -0.170 4.170 20 C -0.045 4.045 21 C -0.180 4.180 22 C 0.113 3.887 23 F -0.145 7.145 24 C -0.207 4.207 25 C 0.141 3.859 26 O -0.320 6.320 27 H 0.252 0.748 28 H 0.373 0.627 29 H 0.043 0.957 30 H 0.041 0.959 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.422 0.578 34 H 0.068 0.932 35 H 0.124 0.876 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.177 0.823 39 H 0.161 0.839 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.998 -28.686 -2.952 32.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.272 4.272 3 Si 0.808 3.192 4 H -0.200 1.200 5 H -0.226 1.226 6 H -0.201 1.201 7 C -0.378 4.378 8 H 0.104 0.896 9 N -0.392 5.392 10 C 0.023 3.977 11 C 0.003 3.997 12 N -0.351 5.351 13 C 0.302 3.698 14 O -0.453 6.453 15 C 0.019 3.981 16 H 0.150 0.850 17 C -0.185 4.185 18 C -0.106 4.106 19 C -0.171 4.171 20 C -0.063 4.063 21 C -0.199 4.199 22 C 0.094 3.906 23 F -0.123 7.123 24 C -0.226 4.226 25 C 0.096 3.904 26 O -0.233 6.233 27 H 0.060 0.940 28 H 0.205 0.795 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.261 0.739 34 H 0.087 0.913 35 H 0.142 0.858 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.194 0.806 39 H 0.179 0.821 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 13.076 -28.548 -2.885 31.533 hybrid contribution -0.672 0.948 0.341 1.211 sum 12.404 -27.600 -2.544 30.366 Atomic orbital electron populations 1.69836 1.06876 1.26328 1.59159 1.25700 0.96437 1.01580 1.03465 0.85118 0.77070 0.78586 0.78394 1.20006 1.22560 1.20072 1.19624 0.91794 0.84766 1.41652 0.89641 1.42443 1.05775 1.01180 1.89825 1.20864 0.93451 0.83730 0.99676 1.21200 0.94946 0.82275 1.01269 1.45462 1.11372 1.03903 1.74397 1.20561 0.87615 0.85795 0.75864 1.90752 1.16288 1.87989 1.50286 1.22435 0.90080 0.82624 1.02916 0.85011 1.22306 1.00085 1.01976 0.94152 1.20632 0.96617 0.88794 1.04587 1.20295 0.95961 0.97986 1.02859 1.21178 0.99928 0.89214 0.95987 1.21376 0.93909 1.02474 1.02097 1.17451 0.91823 0.82579 0.98761 1.91488 1.76932 1.56261 1.87644 1.20504 1.03729 0.90433 1.07948 1.18528 0.93621 0.83178 0.95096 1.86024 1.38541 1.12760 1.86014 0.93970 0.79549 0.93863 0.94115 0.92919 0.92684 0.73935 0.91304 0.85774 0.86916 0.86594 0.80591 0.82131 0.85275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.56 13.06 21.65 0.28 -59.28 16 2 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 3 Si 0.98 45.01 29.55 68.60 2.03 47.04 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 5 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.25 -13.31 9.99 84.03 0.84 -12.47 16 8 H 0.09 4.27 7.83 -2.91 -0.02 4.25 16 9 N -0.75 -37.03 5.60 -343.44 -1.92 -38.96 16 10 C 0.15 5.31 6.37 86.38 0.55 5.86 16 11 C 0.13 4.14 5.79 86.38 0.50 4.64 16 12 N -0.70 -16.13 5.52 -463.05 -2.56 -18.68 16 13 C 0.52 14.01 7.18 87.66 0.63 14.64 16 14 O -0.57 -22.55 16.52 15.85 0.26 -22.29 16 15 C 0.08 1.47 3.21 29.98 0.10 1.56 16 16 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 17 C -0.15 -1.70 5.46 30.75 0.17 -1.53 16 18 C -0.07 -0.47 5.86 29.89 0.18 -0.30 16 19 C -0.17 -2.25 5.75 -19.73 -0.11 -2.36 16 20 C -0.05 -0.42 9.66 22.30 0.22 -0.21 16 21 C -0.18 -2.24 10.03 22.30 0.22 -2.01 16 22 C 0.11 2.13 7.30 22.32 0.16 2.30 16 23 F -0.14 -3.00 17.27 44.97 0.78 -2.23 16 24 C -0.21 -4.57 9.91 22.46 0.22 -4.34 16 25 C 0.14 2.97 6.47 22.52 0.15 3.11 16 26 O -0.32 -8.27 9.47 -72.99 -0.69 -8.96 16 27 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 28 H 0.37 20.19 7.67 -92.71 -0.71 19.47 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.42 6.02 8.32 -92.71 -0.77 5.25 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.12 0.73 7.97 -2.39 -0.02 0.71 16 36 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.18 0.26 8.06 -2.91 -0.02 0.24 16 39 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 40 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -78.37 346.19 2.06 -76.31 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -0.40 Total: 22.20 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 4.28 Total: 4.84 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -4.20 Total: -116.92 kcal Atomic # 8 Polarization: -30.82 SS G_CDS: -0.43 Total: -31.25 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.78 Total: -2.23 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -78.37 2.06 -76.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131337989.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.899 kcal (2) G-P(sol) polarization free energy of solvation -78.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds