Wall clock time and date at job start Fri Apr 10 2020 22:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 117.00010 * 2 1 4 4 O 1.20834 * 119.99822 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00034 * 179.72585 * 3 2 1 6 6 H 1.09003 * 110.59612 * 38.72431 * 5 3 2 7 7 C 1.54935 * 110.66449 * 275.53296 * 5 3 2 8 8 C 1.54594 * 102.92056 * 204.15187 * 7 5 3 9 9 H 1.08996 * 110.31228 * 140.87444 * 8 7 5 10 10 N 1.46505 * 110.39374 * 262.99926 * 8 7 5 11 11 C 1.39676 * 120.00066 * 202.21776 * 10 8 7 12 12 C 1.39295 * 119.94103 * 359.72527 * 11 10 8 13 13 C 1.38696 * 120.39914 * 179.76480 * 12 11 10 14 14 F 1.35101 * 119.86132 * 180.28155 * 13 12 11 15 15 C 1.37920 * 120.27398 * 0.50908 * 13 12 11 16 16 C 1.40702 * 119.87118 * 359.74996 * 15 13 12 17 17 C 1.41409 * 120.20102 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99568 * 24.44260 * 17 16 15 19 19 C 1.39918 * 120.00477 * 204.45039 * 17 16 15 20 20 N 1.30835 * 120.00140 * 17.88468 * 19 17 16 21 21 Si 1.86803 * 120.00215 * 197.88797 * 19 17 16 22 22 H 1.48501 * 109.47133 * 59.99886 * 21 19 17 23 23 H 1.48502 * 109.47015 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.47010 * 300.00007 * 21 19 17 25 25 C 1.38297 * 119.93565 * 179.97438 * 11 10 8 26 26 C 1.53996 * 105.14312 * 21.95573 * 8 7 5 27 27 N 1.47907 * 107.05353 * 1.23052 * 26 8 7 28 28 H 1.09000 * 109.46736 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47196 * 300.00268 * 1 2 3 30 30 H 1.08999 * 109.46968 * 59.99910 * 1 2 3 31 31 H 1.09004 * 110.72580 * 322.50861 * 7 5 3 32 32 H 1.09000 * 110.72333 * 85.79674 * 7 5 3 33 33 H 0.97002 * 119.99473 * 22.22235 * 10 8 7 34 34 H 1.08004 * 119.79840 * 0.02562 * 12 11 10 35 35 H 1.08003 * 120.06551 * 179.76879 * 15 13 12 36 36 H 0.96998 * 120.00036 * 179.97438 * 20 19 17 37 37 H 1.07990 * 120.14019 * 0.02562 * 25 11 10 38 38 H 1.08999 * 109.92317 * 241.87391 * 26 8 7 39 39 H 1.09001 * 110.08070 * 120.66319 * 26 8 7 40 40 H 1.00901 * 111.00478 * 95.18042 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0062 6 1 3.9936 0.4986 -0.6286 7 6 4.1135 1.1670 1.4517 8 6 5.4875 1.8689 1.3545 9 1 5.6720 2.4649 2.2482 10 7 6.5539 0.8807 1.1743 11 6 7.8690 1.2019 1.5183 12 6 8.1661 2.4640 2.0272 13 6 9.4679 2.7914 2.3764 14 9 9.7428 4.0168 2.8743 15 6 10.4835 1.8727 2.2131 16 6 10.1972 0.5963 1.6950 17 6 11.2331 -0.3512 1.5251 18 1 12.1305 -0.2830 2.1222 19 6 11.0957 -1.3770 0.5835 20 7 10.2039 -1.2759 -0.3685 21 14 12.1853 -2.8908 0.6856 22 1 11.9696 -3.5690 1.9889 23 1 11.8433 -3.8223 -0.4192 24 1 13.6089 -2.4848 0.5685 25 6 8.8746 0.2678 1.3481 26 6 5.3875 2.7791 0.1163 27 7 4.0226 2.6193 -0.4305 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.4615 1.6906 2.1511 32 1 4.2333 0.1232 1.7419 33 1 6.3467 0.0034 0.8160 34 1 7.3773 3.1907 2.1545 35 1 11.4966 2.1325 2.4826 36 1 10.1089 -1.9869 -1.0215 37 1 8.6453 -0.7093 0.9494 38 1 6.1237 2.4757 -0.6281 39 1 5.5540 3.8180 0.4011 40 1 3.4074 3.3401 -0.0840 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169136660.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:05:04 Heat of formation + Delta-G solvation = -103.953516 kcal Electronic energy + Delta-G solvation = -24829.233639 eV Core-core repulsion = 20944.001508 eV Total energy + Delta-G solvation = -3885.232131 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.72387 -40.94136 -39.01072 -37.42650 -36.59167 -34.42449 -33.02680 -30.22416 -29.63824 -29.22882 -27.74608 -26.51893 -25.45616 -23.47500 -21.51989 -20.90294 -20.76512 -19.95958 -18.33754 -17.61961 -17.31955 -16.62785 -16.11955 -15.66189 -15.12656 -15.03243 -14.81939 -14.44157 -14.38982 -14.20881 -14.05606 -13.84173 -13.43843 -13.14743 -12.92087 -12.47672 -12.28996 -12.00420 -11.87452 -11.73704 -11.58431 -11.20418 -11.10669 -11.08166 -10.99014 -10.68033 -10.58765 -10.48067 -10.12121 -9.69350 -9.44369 -8.99637 -8.63222 -7.40298 -6.88264 -6.38096 -4.49589 1.87896 2.35309 2.71926 2.92852 3.03261 3.05952 3.18898 3.87539 3.94901 4.10862 4.33057 4.52837 4.57412 4.76975 4.80193 4.87283 4.99069 5.17899 5.22234 5.37661 5.47180 5.57136 5.67483 5.75073 5.91233 6.04095 6.22834 6.31229 6.41997 6.61539 6.75201 6.96723 7.12565 7.16549 7.23889 7.44910 7.49009 7.66714 7.89939 7.99375 8.27781 8.49372 8.64173 8.82568 8.89326 10.09909 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.014718 B = 0.003467 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.946374 B = 8074.056919 C = 9621.326838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.470 3.530 4 O -0.504 6.504 5 C 0.080 3.920 6 H 0.126 0.874 7 C -0.151 4.151 8 C 0.136 3.864 9 H 0.088 0.912 10 N -0.745 5.745 11 C 0.239 3.761 12 C -0.334 4.334 13 C 0.143 3.857 14 F -0.169 7.169 15 C -0.289 4.289 16 C 0.158 3.842 17 C -0.457 4.457 18 H 0.080 0.920 19 C 0.079 3.921 20 N -0.783 5.783 21 Si 0.909 3.091 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.265 1.265 25 C -0.238 4.238 26 C 0.026 3.974 27 N -0.654 5.654 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.394 0.606 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.281 0.719 37 H 0.123 0.877 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.658 -0.706 0.205 14.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.271 6.271 3 C 0.313 3.687 4 O -0.391 6.391 5 C -0.031 4.031 6 H 0.144 0.856 7 C -0.191 4.191 8 C 0.027 3.973 9 H 0.106 0.894 10 N -0.379 5.379 11 C 0.140 3.860 12 C -0.357 4.357 13 C 0.123 3.877 14 F -0.148 7.148 15 C -0.310 4.310 16 C 0.154 3.846 17 C -0.486 4.486 18 H 0.098 0.902 19 C -0.140 4.140 20 N -0.408 5.408 21 Si 0.733 3.267 22 H -0.188 1.188 23 H -0.203 1.203 24 H -0.189 1.189 25 C -0.262 4.262 26 C -0.105 4.105 27 N -0.286 5.286 28 H 0.121 0.879 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.228 0.772 34 H 0.116 0.884 35 H 0.119 0.881 36 H 0.092 0.908 37 H 0.140 0.860 38 H 0.113 0.887 39 H 0.093 0.907 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -14.882 -0.481 -0.649 14.904 hybrid contribution 0.012 -0.549 0.783 0.957 sum -14.870 -1.030 0.134 14.906 Atomic orbital electron populations 1.23293 0.76144 1.03834 1.02590 1.86520 1.23552 1.33147 1.83875 1.23632 0.91788 0.81467 0.71847 1.90655 1.66901 1.36369 1.45180 1.22472 0.86426 0.96502 0.97723 0.85614 1.23335 0.97020 1.03610 0.95121 1.21834 0.86180 0.90860 0.98392 0.89421 1.44412 1.04040 1.15627 1.73773 1.17245 0.83312 0.92694 0.92780 1.19690 0.94690 0.98439 1.22893 1.17234 0.93963 0.79095 0.97406 1.91327 1.94803 1.42818 1.85823 1.20841 0.96769 0.95261 1.18121 1.17055 0.92014 0.89410 0.86080 1.19543 1.02975 1.08218 1.17849 0.90196 1.25912 0.95401 0.99118 0.93614 1.69841 1.29671 1.31845 1.09410 0.86357 0.80827 0.80598 0.78920 1.18756 1.20307 1.18944 1.20753 0.91169 0.99704 1.14555 1.23540 0.90094 1.00252 0.96617 1.62898 1.04397 1.01643 1.59619 0.87931 0.91883 0.91777 0.90045 0.88680 0.77156 0.88385 0.88103 0.90766 0.85963 0.88696 0.90717 0.83435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.74 10.57 -39.25 -0.41 -4.16 16 3 C 0.47 5.58 7.26 36.00 0.26 5.84 16 4 O -0.50 -6.99 15.62 -18.76 -0.29 -7.29 16 5 C 0.08 0.91 3.81 -66.94 -0.26 0.66 16 6 H 0.13 1.40 8.14 -51.93 -0.42 0.98 16 7 C -0.15 -1.66 6.11 -24.87 -0.15 -1.81 16 8 C 0.14 1.85 2.94 -66.57 -0.20 1.66 16 9 H 0.09 1.25 6.57 -51.93 -0.34 0.91 16 10 N -0.75 -12.38 5.16 -50.91 -0.26 -12.64 16 11 C 0.24 5.08 6.64 -83.87 -0.56 4.53 16 12 C -0.33 -7.25 9.20 -39.02 -0.36 -7.61 16 13 C 0.14 3.35 7.28 -39.53 -0.29 3.06 16 14 F -0.17 -3.78 17.26 2.25 0.04 -3.74 16 15 C -0.29 -7.16 9.76 -38.77 -0.38 -7.54 16 16 C 0.16 4.07 5.57 -106.86 -0.60 3.48 16 17 C -0.46 -11.65 9.05 -37.75 -0.34 -12.00 16 18 H 0.08 1.97 7.91 -52.48 -0.41 1.55 16 19 C 0.08 1.88 5.14 -17.35 -0.09 1.79 16 20 N -0.78 -19.10 10.96 55.55 0.61 -18.49 16 21 Si 0.91 17.84 29.60 -169.99 -5.03 12.81 16 22 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 25 C -0.24 -5.74 8.53 -38.66 -0.33 -6.07 16 26 C 0.03 0.35 7.31 -2.75 -0.02 0.33 16 27 N -0.65 -8.22 7.27 -104.37 -0.76 -8.98 16 28 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 30 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 31 H 0.08 0.83 8.05 -51.93 -0.42 0.42 16 32 H 0.09 0.98 7.97 -51.93 -0.41 0.57 16 33 H 0.39 6.14 8.55 -40.82 -0.35 5.80 16 34 H 0.10 1.92 6.25 -52.48 -0.33 1.60 16 35 H 0.10 2.41 8.06 -52.48 -0.42 1.99 16 36 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 37 H 0.12 3.01 6.15 -52.49 -0.32 2.69 16 38 H 0.09 1.51 7.92 -51.93 -0.41 1.09 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.35 4.26 7.76 -39.29 -0.30 3.95 16 LS Contribution 341.09 15.07 5.14 5.14 Total: -1.00 -27.81 341.09 -8.18 -35.99 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -4.97 Total: 13.72 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -2.23 Total: -12.37 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: -0.41 Total: -40.11 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -0.71 Total: -11.44 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.04 Total: -3.74 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.81 -8.18 -35.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169136660.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.966 kcal (2) G-P(sol) polarization free energy of solvation -27.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds