Wall clock time and date at job start Fri Apr 10 2020 22:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34229 * 117.00010 * 2 1 4 4 O 1.20834 * 119.99822 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00034 * 179.72585 * 3 2 1 6 6 H 1.09003 * 110.59612 * 38.72431 * 5 3 2 7 7 C 1.54935 * 110.66449 * 275.53296 * 5 3 2 8 8 C 1.54594 * 102.92056 * 204.15187 * 7 5 3 9 9 H 1.08996 * 110.31228 * 140.87444 * 8 7 5 10 10 N 1.46505 * 110.39374 * 262.99926 * 8 7 5 11 11 C 1.39676 * 120.00066 * 202.21776 * 10 8 7 12 12 C 1.39295 * 119.94103 * 359.72527 * 11 10 8 13 13 C 1.38696 * 120.39914 * 179.76480 * 12 11 10 14 14 F 1.35101 * 119.86132 * 180.28155 * 13 12 11 15 15 C 1.37920 * 120.27398 * 0.50908 * 13 12 11 16 16 C 1.40702 * 119.87118 * 359.74996 * 15 13 12 17 17 C 1.41409 * 120.20102 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99568 * 24.44260 * 17 16 15 19 19 C 1.39918 * 120.00477 * 204.45039 * 17 16 15 20 20 N 1.30835 * 120.00140 * 17.88468 * 19 17 16 21 21 Si 1.86803 * 120.00215 * 197.88797 * 19 17 16 22 22 H 1.48501 * 109.47133 * 59.99886 * 21 19 17 23 23 H 1.48502 * 109.47015 * 179.97438 * 21 19 17 24 24 H 1.48491 * 109.47010 * 300.00007 * 21 19 17 25 25 C 1.38297 * 119.93565 * 179.97438 * 11 10 8 26 26 C 1.53996 * 105.14312 * 21.95573 * 8 7 5 27 27 N 1.47907 * 107.05353 * 1.23052 * 26 8 7 28 28 H 1.09000 * 109.46736 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47196 * 300.00268 * 1 2 3 30 30 H 1.08999 * 109.46968 * 59.99910 * 1 2 3 31 31 H 1.09004 * 110.72580 * 322.50861 * 7 5 3 32 32 H 1.09000 * 110.72333 * 85.79674 * 7 5 3 33 33 H 0.97002 * 119.99473 * 22.22235 * 10 8 7 34 34 H 1.08004 * 119.79840 * 0.02562 * 12 11 10 35 35 H 1.08003 * 120.06551 * 179.76879 * 15 13 12 36 36 H 0.96998 * 120.00036 * 179.97438 * 20 19 17 37 37 H 1.07990 * 120.14019 * 0.02562 * 25 11 10 38 38 H 1.08999 * 109.92317 * 241.87391 * 26 8 7 39 39 H 1.09001 * 110.08070 * 120.66319 * 26 8 7 40 40 H 1.00901 * 111.00478 * 95.18042 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0062 6 1 3.9936 0.4986 -0.6286 7 6 4.1135 1.1670 1.4517 8 6 5.4875 1.8689 1.3545 9 1 5.6720 2.4649 2.2482 10 7 6.5539 0.8807 1.1743 11 6 7.8690 1.2019 1.5183 12 6 8.1661 2.4640 2.0272 13 6 9.4679 2.7914 2.3764 14 9 9.7428 4.0168 2.8743 15 6 10.4835 1.8727 2.2131 16 6 10.1972 0.5963 1.6950 17 6 11.2331 -0.3512 1.5251 18 1 12.1305 -0.2830 2.1222 19 6 11.0957 -1.3770 0.5835 20 7 10.2039 -1.2759 -0.3685 21 14 12.1853 -2.8908 0.6856 22 1 11.9696 -3.5690 1.9889 23 1 11.8433 -3.8223 -0.4192 24 1 13.6089 -2.4848 0.5685 25 6 8.8746 0.2678 1.3481 26 6 5.3875 2.7791 0.1163 27 7 4.0226 2.6193 -0.4305 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.4615 1.6906 2.1511 32 1 4.2333 0.1232 1.7419 33 1 6.3467 0.0034 0.8160 34 1 7.3773 3.1907 2.1545 35 1 11.4966 2.1325 2.4826 36 1 10.1089 -1.9869 -1.0215 37 1 8.6453 -0.7093 0.9494 38 1 6.1237 2.4757 -0.6281 39 1 5.5540 3.8180 0.4011 40 1 3.4074 3.3401 -0.0840 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169136660.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:05:03 Heat of formation + Delta-G solvation = -121.078570 kcal Electronic energy + Delta-G solvation = -24829.976237 eV Core-core repulsion = 20944.001508 eV Total energy + Delta-G solvation = -3885.974729 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 308.132 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.55286 -41.86130 -40.22055 -38.94719 -37.55307 -36.01759 -34.68252 -31.35636 -31.05332 -30.81346 -28.54896 -27.94937 -27.26054 -24.42918 -23.14878 -22.55971 -21.71604 -21.32078 -19.56906 -19.06772 -18.27362 -17.77765 -17.44636 -17.14193 -16.82815 -16.48174 -16.22176 -15.96633 -15.84383 -15.64008 -15.42878 -14.91397 -14.62477 -14.32467 -14.05250 -13.79505 -13.59988 -13.37592 -13.20050 -12.88292 -12.75638 -12.69130 -12.62123 -12.36407 -12.31917 -11.97513 -11.93527 -11.86156 -11.56042 -11.44812 -11.13605 -10.54553 -9.82844 -9.25443 -8.66639 -8.02922 -6.40258 0.93998 0.96396 1.10852 1.43205 1.53143 1.54953 1.58522 2.23873 2.62470 2.73289 3.07302 3.39087 3.67147 3.68309 3.79528 3.87657 4.06757 4.15649 4.26346 4.28102 4.31417 4.52004 4.59148 4.69031 4.73108 4.78926 4.85068 4.97234 5.09154 5.15578 5.22400 5.29275 5.41382 5.49760 5.72849 5.85096 6.11532 6.12270 6.19219 6.47165 6.57500 6.83933 6.94059 6.96315 7.14851 8.33057 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.014718 B = 0.003467 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.946374 B = 8074.056919 C = 9621.326838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.475 3.525 4 O -0.527 6.527 5 C 0.081 3.919 6 H 0.130 0.870 7 C -0.138 4.138 8 C 0.133 3.867 9 H 0.088 0.912 10 N -0.734 5.734 11 C 0.253 3.747 12 C -0.331 4.331 13 C 0.137 3.863 14 F -0.163 7.163 15 C -0.317 4.317 16 C 0.133 3.867 17 C -0.494 4.494 18 H 0.075 0.925 19 C 0.043 3.957 20 N -0.808 5.808 21 Si 0.981 3.019 22 H -0.260 1.260 23 H -0.265 1.265 24 H -0.263 1.263 25 C -0.259 4.259 26 C 0.033 3.967 27 N -0.658 5.658 28 H 0.132 0.868 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.400 0.600 34 H 0.123 0.877 35 H 0.096 0.904 36 H 0.290 0.710 37 H 0.113 0.887 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.338 -1.618 0.197 16.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.319 3.681 4 O -0.416 6.416 5 C -0.030 4.030 6 H 0.147 0.853 7 C -0.177 4.177 8 C 0.026 3.974 9 H 0.106 0.894 10 N -0.365 5.365 11 C 0.151 3.849 12 C -0.354 4.354 13 C 0.118 3.882 14 F -0.142 7.142 15 C -0.339 4.339 16 C 0.130 3.870 17 C -0.522 4.522 18 H 0.093 0.907 19 C -0.174 4.174 20 N -0.433 5.433 21 Si 0.801 3.199 22 H -0.185 1.185 23 H -0.190 1.190 24 H -0.188 1.188 25 C -0.284 4.284 26 C -0.098 4.098 27 N -0.290 5.290 28 H 0.150 0.850 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.124 0.876 33 H 0.236 0.764 34 H 0.141 0.859 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.131 0.869 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -16.614 -1.390 -0.665 16.686 hybrid contribution 0.378 -0.206 0.757 0.871 sum -16.236 -1.596 0.091 16.314 Atomic orbital electron populations 1.23600 0.74372 1.05886 1.02698 1.86508 1.25287 1.32261 1.83364 1.23591 0.91760 0.81533 0.71252 1.90650 1.67385 1.37161 1.46412 1.22473 0.86549 0.95911 0.98046 0.85253 1.23244 0.95203 1.04146 0.95120 1.22002 0.86499 0.90517 0.98427 0.89367 1.44457 1.03003 1.16579 1.72499 1.17231 0.84750 0.91858 0.91049 1.19929 0.94573 0.99003 1.21931 1.17384 0.94467 0.79079 0.97312 1.91331 1.94865 1.42332 1.85718 1.20906 0.97143 0.95843 1.19971 1.17384 0.93057 0.89883 0.86695 1.19783 1.03300 1.09954 1.19211 0.90692 1.26678 0.96771 1.01354 0.92618 1.69874 1.30730 1.32889 1.09760 0.85276 0.78716 0.76701 0.79172 1.18477 1.18960 1.18794 1.20708 0.91477 1.00108 1.16061 1.23353 0.90177 1.00574 0.95693 1.62835 1.03982 1.02400 1.59796 0.84982 0.91621 0.91880 0.88651 0.87567 0.76418 0.85893 0.88600 0.89919 0.86882 0.91079 0.89889 0.83035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.54 16 2 O -0.36 -6.73 10.57 -51.40 -0.54 -7.28 16 3 C 0.48 10.31 7.26 71.24 0.52 10.83 16 4 O -0.53 -13.73 15.62 21.94 0.34 -13.39 16 5 C 0.08 1.68 3.81 44.51 0.17 1.85 16 6 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 7 C -0.14 -2.64 6.11 31.80 0.19 -2.45 16 8 C 0.13 3.33 2.94 45.87 0.13 3.47 16 9 H 0.09 2.28 6.57 -2.39 -0.02 2.26 16 10 N -0.73 -23.31 5.16 -314.99 -1.63 -24.93 16 11 C 0.25 10.65 6.64 38.16 0.25 10.90 16 12 C -0.33 -14.08 9.20 22.63 0.21 -13.87 16 13 C 0.14 6.46 7.28 22.30 0.16 6.62 16 14 F -0.16 -7.26 17.26 44.97 0.78 -6.48 16 15 C -0.32 -16.24 9.76 22.80 0.22 -16.02 16 16 C 0.13 7.09 5.57 -21.31 -0.12 6.97 16 17 C -0.49 -26.01 9.05 23.46 0.21 -25.79 16 18 H 0.07 3.85 7.91 -2.91 -0.02 3.83 16 19 C 0.04 2.06 5.14 85.25 0.44 2.50 16 20 N -0.81 -39.74 10.96 21.82 0.24 -39.50 16 21 Si 0.98 36.53 29.60 68.60 2.03 38.56 16 22 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 23 H -0.27 -9.25 7.11 99.48 0.71 -8.54 16 24 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 25 C -0.26 -12.72 8.53 22.87 0.20 -12.53 16 26 C 0.03 0.84 7.31 86.45 0.63 1.47 16 27 N -0.66 -15.41 7.27 -484.13 -3.52 -18.93 16 28 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.81 8.13 -2.39 -0.02 0.79 16 30 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 31 H 0.09 1.64 8.05 -2.39 -0.02 1.63 16 32 H 0.11 1.87 7.97 -2.39 -0.02 1.85 16 33 H 0.40 11.90 8.55 -92.71 -0.79 11.11 16 34 H 0.12 4.55 6.25 -2.91 -0.02 4.54 16 35 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 36 H 0.29 12.84 8.30 -92.71 -0.77 12.07 16 37 H 0.11 5.68 6.15 -2.92 -0.02 5.67 16 38 H 0.07 2.19 7.92 -2.39 -0.02 2.17 16 39 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.35 7.97 7.76 -89.69 -0.70 7.27 16 Total: -1.00 -60.39 341.09 1.73 -58.66 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: -0.39 Total: 37.81 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 4.42 Total: -24.51 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -4.90 Total: -83.37 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.20 Total: -20.67 kcal Atomic # 9 Polarization: -7.26 SS G_CDS: 0.78 Total: -6.48 kcal Atomic # 14 Polarization: 36.53 SS G_CDS: 2.03 Total: 38.56 kcal Total: -60.39 1.73 -58.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169136660.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.418 kcal (2) G-P(sol) polarization free energy of solvation -60.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds