Wall clock time and date at job start Fri Apr 10 2020 22:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33820 * 122.44785 * 2 1 4 4 S 1.70617 * 110.95729 * 179.97438 * 3 2 1 5 5 C 1.75827 * 91.56336 * 0.02562 * 4 3 2 6 6 C 1.46583 * 125.45984 * 179.97438 * 5 4 3 7 7 O 1.21706 * 120.00114 * 180.02562 * 6 5 4 8 8 N 1.34771 * 119.99891 * 0.02782 * 6 5 4 9 9 C 1.46500 * 120.00115 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.49769 * 35.06484 * 9 8 6 11 11 C 1.53189 * 109.49774 * 274.99762 * 9 8 6 12 12 N 1.46929 * 108.77498 * 294.65290 * 11 9 8 13 13 C 1.36933 * 120.63275 * 126.37210 * 12 11 9 14 14 H 1.08004 * 119.99947 * 331.84887 * 13 12 11 15 15 C 1.38810 * 120.00166 * 151.84722 * 13 12 11 16 16 N 1.31613 * 120.00273 * 343.06817 * 15 13 12 17 17 Si 1.86803 * 119.99828 * 163.06107 * 15 13 12 18 18 H 1.48503 * 109.47179 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47229 * 120.00279 * 17 15 13 20 20 H 1.48502 * 109.47136 * 240.00365 * 17 15 13 21 21 C 1.46923 * 118.73590 * 306.38793 * 12 11 9 22 22 C 1.53191 * 108.89309 * 53.54071 * 21 12 11 23 23 C 1.53045 * 109.52656 * 155.14387 * 9 8 6 24 24 H 1.08998 * 109.45992 * 178.61113 * 23 9 8 25 25 C 1.53000 * 109.45822 * 298.58357 * 23 9 8 26 26 C 1.36650 * 109.08369 * 0.24135 * 5 4 3 27 27 H 1.08997 * 109.47345 * 90.02491 * 1 2 3 28 28 H 1.09004 * 109.46582 * 210.01911 * 1 2 3 29 29 H 1.08998 * 109.47596 * 330.01614 * 1 2 3 30 30 H 1.08000 * 124.52144 * 359.96275 * 3 2 1 31 31 H 0.97003 * 120.00240 * 359.97438 * 8 6 5 32 32 H 1.09000 * 109.59087 * 174.86004 * 11 9 8 33 33 H 1.09002 * 109.70437 * 54.50812 * 11 9 8 34 34 H 0.96997 * 120.00271 * 180.02562 * 16 15 13 35 35 H 1.09003 * 109.58515 * 173.39918 * 21 12 11 36 36 H 1.09004 * 109.58793 * 293.67859 * 21 12 11 37 37 H 1.09003 * 109.49531 * 65.38889 * 22 21 12 38 38 H 1.09003 * 109.49337 * 185.48298 * 22 21 12 39 39 H 1.09004 * 109.47423 * 59.99909 * 25 23 9 40 40 H 1.08994 * 109.47250 * 179.97438 * 25 23 9 41 41 H 1.09003 * 109.47088 * 300.00035 * 25 23 9 42 42 H 1.08003 * 123.35566 * 179.75562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2249 1.1293 0.0000 4 16 3.8969 0.7894 0.0007 5 6 3.5938 -0.9425 0.0002 6 6 4.6232 -1.9860 0.0000 7 8 4.3003 -3.1595 -0.0008 8 7 5.9274 -1.6460 0.0007 9 6 6.9563 -2.6888 0.0010 10 1 6.6134 -3.5384 -0.5897 11 6 7.2251 -3.1414 1.4396 12 7 7.8084 -2.0191 2.1872 13 6 7.2511 -1.6015 3.3663 14 1 6.1944 -1.7386 3.5426 15 6 8.0444 -1.0021 4.3350 16 7 9.3535 -1.1275 4.2836 17 14 7.2537 -0.0174 5.7114 18 1 5.7782 -0.0290 5.5439 19 1 7.6076 -0.6235 7.0202 20 1 7.7466 1.3826 5.6648 21 6 9.0007 -1.3530 1.6455 22 6 8.7154 -0.9209 0.2037 23 6 8.2475 -2.1336 -0.6046 24 1 9.0195 -2.9027 -0.5813 25 6 7.9912 -1.7124 -2.0530 26 6 2.2447 -1.1600 -0.0059 27 1 -0.3634 -0.0004 -1.0276 28 1 -0.3633 -0.8899 0.5142 29 1 -0.3634 0.8901 0.5136 30 1 1.8024 2.1232 -0.0006 31 1 6.1848 -0.7107 0.0010 32 1 7.9225 -3.9791 1.4349 33 1 6.2903 -3.4470 1.9095 34 1 9.9077 -0.7089 4.9607 35 1 9.2361 -0.4770 2.2498 36 1 9.8436 -2.0441 1.6599 37 1 7.9349 -0.1601 0.1997 38 1 9.6237 -0.5133 -0.2403 39 1 7.2188 -0.9436 -2.0766 40 1 8.9106 -1.3165 -2.4844 41 1 7.6615 -2.5766 -2.6298 42 1 1.8020 -2.1451 -0.0113 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000965999649.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:04:35 Heat of formation + Delta-G solvation = -10.806262 kcal Electronic energy + Delta-G solvation = -23958.872078 eV Core-core repulsion = 20643.892291 eV Total energy + Delta-G solvation = -3314.979787 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 308.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.22440 -39.56415 -38.60823 -36.01632 -34.23579 -33.01106 -32.11757 -30.74757 -28.99383 -28.59866 -26.15116 -25.32377 -23.70018 -22.79435 -21.85167 -20.45090 -19.81928 -19.47960 -18.58312 -17.18359 -17.01241 -16.63844 -16.25961 -15.81855 -15.65045 -15.08619 -15.02622 -14.76013 -14.62002 -14.48704 -14.15748 -14.04218 -13.55480 -13.28119 -13.13450 -13.01249 -12.90811 -12.79604 -12.75559 -12.66523 -12.40042 -12.19517 -11.91064 -11.84918 -11.66934 -11.33167 -11.11570 -11.10541 -10.57220 -10.14793 -9.79525 -9.34586 -8.63985 -7.88112 -5.32833 -0.47504 0.50299 0.96101 1.37761 1.41875 1.44786 1.54720 2.11226 2.28356 2.49148 3.25846 3.65370 3.72379 3.88103 3.99273 4.07108 4.08296 4.22079 4.39998 4.44423 4.61209 4.68952 4.73530 4.74961 4.77169 4.86960 4.91429 4.98797 5.01680 5.05852 5.07214 5.19557 5.24805 5.40154 5.43794 5.49313 5.50408 5.56758 5.63566 5.78067 6.37914 6.51439 7.15049 7.15780 7.84601 8.36325 9.17162 Molecular weight = 308.13amu Principal moments of inertia in cm(-1) A = 0.011919 B = 0.005656 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.529674 B = 4948.989948 C = 6318.313759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.128 4.128 3 C -0.227 4.227 4 S 0.219 5.781 5 C -0.292 4.292 6 C 0.583 3.417 7 O -0.579 6.579 8 N -0.689 5.689 9 C 0.144 3.856 10 H 0.084 0.916 11 C 0.134 3.866 12 N -0.598 5.598 13 C -0.253 4.253 14 H 0.048 0.952 15 C -0.042 4.042 16 N -0.929 5.929 17 Si 0.957 3.043 18 H -0.274 1.274 19 H -0.294 1.294 20 H -0.282 1.282 21 C 0.174 3.826 22 C -0.124 4.124 23 C -0.087 4.087 24 H 0.083 0.917 25 C -0.136 4.136 26 C -0.061 4.061 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.199 0.801 31 H 0.401 0.599 32 H 0.025 0.975 33 H 0.032 0.968 34 H 0.250 0.750 35 H 0.057 0.943 36 H -0.001 1.001 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.058 0.942 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.344 6.905 -14.157 19.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C -0.365 4.365 4 S 0.488 5.512 5 C -0.412 4.412 6 C 0.371 3.629 7 O -0.462 6.462 8 N -0.339 5.339 9 C 0.038 3.962 10 H 0.102 0.898 11 C 0.007 3.993 12 N -0.322 5.322 13 C -0.383 4.383 14 H 0.066 0.934 15 C -0.237 4.237 16 N -0.575 5.575 17 Si 0.786 3.214 18 H -0.199 1.199 19 H -0.221 1.221 20 H -0.209 1.209 21 C 0.049 3.951 22 C -0.163 4.163 23 C -0.106 4.106 24 H 0.102 0.898 25 C -0.193 4.193 26 C -0.095 4.095 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.216 0.784 31 H 0.238 0.762 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.017 0.983 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.078 7.069 -14.047 18.677 hybrid contribution -1.190 -0.408 1.384 1.870 sum -11.268 6.661 -12.663 18.213 Atomic orbital electron populations 1.20561 0.87230 1.03709 1.03377 1.19004 0.99429 0.90705 1.04922 1.25554 0.97743 1.04577 1.08604 1.83046 1.05007 0.96212 1.66925 1.24601 0.98035 0.98428 1.20141 1.17288 0.82471 0.87422 0.75721 1.90747 1.82404 1.19845 1.53209 1.45721 1.04551 1.10616 1.72974 1.21426 0.87805 0.90421 0.96557 0.89841 1.21334 0.95884 0.89997 0.92038 1.44154 1.31866 1.33967 1.22196 1.19265 0.91230 1.34407 0.93410 0.93426 1.25632 0.95816 1.03039 0.99260 1.70163 1.04036 1.46840 1.36437 0.85365 0.78159 0.78691 0.79205 1.19925 1.22072 1.20852 1.20670 0.86876 0.95940 0.91629 1.22100 1.01057 0.97032 0.96158 1.21284 0.95142 0.98498 0.95669 0.89838 1.21772 1.02268 1.01445 0.93837 1.20838 0.90893 1.00738 0.97075 0.89926 0.91267 0.89952 0.78363 0.76186 0.95729 0.94936 0.94027 0.92502 0.98315 0.92875 0.90065 0.92938 0.90753 0.92302 0.83614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.29 10.13 71.23 0.72 -0.57 16 2 C -0.13 -2.72 5.78 -21.05 -0.12 -2.84 16 3 C -0.23 -4.40 10.67 66.82 0.71 -3.69 16 4 S 0.22 5.25 22.16 -56.49 -1.25 4.00 16 5 C -0.29 -9.08 6.45 24.08 0.16 -8.93 16 6 C 0.58 21.73 7.75 86.42 0.67 22.40 16 7 O -0.58 -25.13 16.50 -4.37 -0.07 -25.20 16 8 N -0.69 -24.02 4.25 -446.22 -1.90 -25.91 16 9 C 0.14 5.13 2.24 45.07 0.10 5.24 16 10 H 0.08 2.96 7.58 -2.39 -0.02 2.94 16 11 C 0.13 6.01 6.12 86.36 0.53 6.54 16 12 N -0.60 -29.93 2.91 -699.10 -2.04 -31.97 16 13 C -0.25 -14.15 9.58 84.03 0.81 -13.34 16 14 H 0.05 2.77 7.89 -2.91 -0.02 2.74 16 15 C -0.04 -2.33 4.92 84.86 0.42 -1.91 16 16 N -0.93 -54.26 11.20 21.65 0.24 -54.02 16 17 Si 0.96 45.29 29.59 68.60 2.03 47.32 16 18 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 C 0.17 8.01 5.30 86.36 0.46 8.47 16 22 C -0.12 -4.18 5.21 30.68 0.16 -4.02 16 23 C -0.09 -2.60 2.47 -10.75 -0.03 -2.62 16 24 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 25 C -0.14 -3.11 9.05 71.98 0.65 -2.46 16 26 C -0.06 -1.68 9.80 21.72 0.21 -1.47 16 27 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 0.99 8.13 -2.38 -0.02 0.97 16 29 H 0.08 0.92 8.12 -2.39 -0.02 0.90 16 30 H 0.20 2.46 8.06 -2.91 -0.02 2.44 16 31 H 0.40 13.06 5.77 -92.71 -0.53 12.53 16 32 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.03 1.60 7.93 -2.39 -0.02 1.58 16 34 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 35 H 0.06 2.97 6.06 -2.39 -0.01 2.96 16 36 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 37 H 0.05 1.76 6.42 -2.39 -0.02 1.74 16 38 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.05 1.19 7.54 -2.38 -0.02 1.17 16 40 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -68.73 350.24 2.94 -65.78 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.49 Total: 19.22 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 5.44 Total: 0.79 kcal Atomic # 7 Polarization: -108.21 SS G_CDS: -3.69 Total: -111.90 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.07 Total: -25.20 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 16 Polarization: 5.25 SS G_CDS: -1.25 Total: 4.00 kcal Total: -68.73 2.94 -65.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000965999649.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.976 kcal (2) G-P(sol) polarization free energy of solvation -68.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds