Wall clock time and date at job start Fri Apr 10 2020 22:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47824 * 2 1 4 4 C 1.52998 * 109.47343 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.47322 * 300.00396 * 3 2 1 6 6 C 1.42905 * 113.99760 * 300.00071 * 5 3 2 7 7 C 1.50700 * 109.47070 * 59.99909 * 3 2 1 8 8 O 1.20825 * 120.00357 * 240.00345 * 7 3 2 9 9 O 1.34233 * 119.99863 * 59.99822 * 7 3 2 10 10 C 1.45203 * 117.00017 * 180.02562 * 9 7 3 11 11 C 1.50701 * 109.46924 * 180.02562 * 10 9 7 12 12 C 1.38302 * 119.92711 * 269.72217 * 11 10 9 13 13 C 1.38100 * 120.06401 * 179.72501 * 12 11 10 14 14 C 1.38882 * 119.93308 * 0.57310 * 13 12 11 15 15 O 1.35749 * 120.07291 * 179.67664 * 14 13 12 16 16 C 1.34824 * 117.00100 * 174.48840 * 15 14 13 17 17 H 1.08001 * 120.00422 * 5.06301 * 16 15 14 18 18 C 1.38656 * 120.00110 * 185.05866 * 16 15 14 19 19 N 1.31564 * 119.99646 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00350 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46992 * 90.00103 * 20 18 16 22 22 H 1.48495 * 109.47302 * 210.00183 * 20 18 16 23 23 H 1.48501 * 109.46860 * 330.00353 * 20 18 16 24 24 C 1.38886 * 119.85961 * 359.70533 * 14 13 12 25 25 C 1.38095 * 119.92904 * 359.97438 * 24 14 13 26 26 H 1.08995 * 109.47920 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46785 * 300.00029 * 1 2 3 28 28 H 1.08998 * 109.46896 * 59.99663 * 1 2 3 29 29 H 1.09007 * 109.47023 * 239.99536 * 2 1 3 30 30 H 1.09007 * 109.47009 * 120.00538 * 2 1 3 31 31 H 1.09000 * 109.47065 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.47300 * 300.00289 * 4 3 2 33 33 H 1.09007 * 109.46836 * 60.00263 * 4 3 2 34 34 H 1.08994 * 109.47424 * 180.02562 * 6 5 3 35 35 H 1.09004 * 109.46858 * 299.99730 * 6 5 3 36 36 H 1.08994 * 109.47331 * 59.99475 * 6 5 3 37 37 H 1.09000 * 109.46762 * 300.00003 * 10 9 7 38 38 H 1.08993 * 109.47276 * 60.00225 * 10 9 7 39 39 H 1.07995 * 119.97011 * 359.97438 * 12 11 10 40 40 H 1.08003 * 120.03800 * 180.27358 * 13 12 11 41 41 H 0.97005 * 119.99344 * 180.02562 * 19 18 16 42 42 H 1.08001 * 120.03187 * 179.97438 * 24 14 13 43 43 H 1.08004 * 119.96486 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 3.5702 1.4422 0.0006 5 8 1.5639 2.1161 -1.1667 6 6 1.9854 1.5198 -2.3951 7 6 1.5379 2.1528 1.2304 8 8 0.8433 3.1353 1.1197 9 8 1.8621 1.6941 2.4496 10 6 1.3425 2.4281 3.5897 11 6 1.8075 1.7715 4.8640 12 6 1.0393 0.7823 5.4506 13 6 1.4655 0.1747 6.6152 14 6 2.6609 0.5663 7.2038 15 8 3.0793 -0.0244 8.3522 16 6 4.3002 0.3205 8.8084 17 1 4.8633 1.0964 8.3110 18 6 4.8331 -0.3209 9.9162 19 7 4.1474 -1.2664 10.5219 20 14 6.5250 0.1564 10.5479 21 1 6.3904 1.2427 11.5514 22 1 7.1687 -1.0236 11.1790 23 1 7.3608 0.6295 9.4152 24 6 3.4272 1.5641 6.6154 25 6 2.9988 2.1631 5.4472 26 1 -0.3635 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.9336 2.4699 0.0002 32 1 3.9331 0.9285 0.8908 33 1 3.9338 0.9282 -0.8892 34 1 1.5831 2.0896 -3.2325 35 1 3.0743 1.5213 -2.4448 36 1 1.6209 0.4938 -2.4447 37 1 1.7061 3.4551 3.5569 38 1 0.2531 2.4271 3.5566 39 1 0.1073 0.4818 4.9953 40 1 0.8674 -0.6008 7.0706 41 1 4.5200 -1.7148 11.2972 42 1 4.3570 1.8710 7.0709 43 1 3.5944 2.9387 4.9888 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796398446.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:05:21 Heat of formation + Delta-G solvation = -135.474164 kcal Electronic energy + Delta-G solvation = -25137.593761 eV Core-core repulsion = 21342.162345 eV Total energy + Delta-G solvation = -3795.431415 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.87631 -39.21697 -38.68446 -36.90597 -35.97063 -33.85768 -32.44986 -30.84447 -30.35784 -30.19595 -27.58651 -26.20288 -25.09608 -24.18660 -22.92856 -22.07653 -20.66295 -20.27939 -18.10463 -17.68649 -17.32078 -17.01532 -16.48128 -15.90894 -15.69801 -15.07355 -14.72495 -14.53818 -14.17764 -13.93473 -13.72284 -13.58203 -13.56695 -13.36273 -12.84980 -12.78605 -12.62748 -12.44591 -12.26040 -12.20587 -11.74951 -11.62283 -11.44311 -11.39900 -11.18935 -11.01324 -10.83350 -10.71176 -10.51025 -10.44544 -10.14776 -9.95127 -9.43016 -8.92445 -8.28694 -7.35150 -6.54188 -4.12798 1.84243 2.13653 2.18765 2.60295 3.08235 3.09166 3.14018 3.70603 3.89637 4.23912 4.39123 4.50938 4.69286 4.89938 4.94369 5.01598 5.04479 5.09425 5.14130 5.19144 5.23507 5.27054 5.31838 5.35439 5.50342 5.57120 5.63474 5.68161 5.75295 5.78662 5.80752 6.02448 6.11301 6.31549 6.49248 6.57835 6.72364 6.79048 6.95176 7.13320 7.25259 7.33816 7.69711 7.81010 7.90617 8.91077 9.58903 10.63230 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.025086 B = 0.002608 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.905722 B =10732.770038 C =11000.419919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.147 4.147 3 C 0.126 3.874 4 C -0.178 4.178 5 O -0.358 6.358 6 C 0.024 3.976 7 C 0.473 3.527 8 O -0.494 6.494 9 O -0.345 6.345 10 C 0.130 3.870 11 C -0.204 4.204 12 C -0.048 4.048 13 C -0.196 4.196 14 C 0.163 3.837 15 O -0.171 6.171 16 C -0.393 4.393 17 H 0.094 0.906 18 C 0.040 3.960 19 N -0.859 5.859 20 Si 0.943 3.057 21 H -0.272 1.272 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.238 4.238 25 C -0.044 4.044 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.113 0.887 40 H 0.120 0.880 41 H 0.272 0.728 42 H 0.130 0.870 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.254 2.802 -20.819 21.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.185 4.185 3 C 0.085 3.915 4 C -0.235 4.235 5 O -0.277 6.277 6 C -0.072 4.072 7 C 0.314 3.686 8 O -0.381 6.381 9 O -0.262 6.262 10 C 0.058 3.942 11 C -0.205 4.205 12 C -0.066 4.066 13 C -0.215 4.215 14 C 0.108 3.892 15 O -0.074 6.074 16 C -0.469 4.469 17 H 0.111 0.889 18 C -0.165 4.165 19 N -0.493 5.493 20 Si 0.767 3.233 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.191 1.191 24 C -0.257 4.257 25 C -0.063 4.063 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.131 0.869 40 H 0.138 0.862 41 H 0.081 0.919 42 H 0.147 0.853 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.656 2.942 -20.416 20.798 hybrid contribution 0.976 0.181 0.286 1.033 sum -1.680 3.123 -20.130 20.440 Atomic orbital electron populations 1.21744 0.94512 1.02130 1.02617 1.22162 0.97728 0.94100 1.04508 1.20907 0.94669 0.91847 0.84047 1.22407 0.92689 1.03994 1.04458 1.88032 1.74149 1.53013 1.12469 1.22902 0.99661 0.98778 0.85839 1.22817 0.77977 0.82789 0.84991 1.90660 1.34744 1.25407 1.87299 1.86623 1.69598 1.55948 1.14043 1.21740 0.98101 0.94089 0.80311 1.18842 0.99421 1.05114 0.97102 1.20506 0.98013 0.93832 0.94275 1.20196 0.97715 1.05089 0.98502 1.19443 0.92734 0.90784 0.86204 1.83976 1.33680 1.58372 1.31358 1.21371 0.91612 1.21064 1.12896 0.88864 1.25331 0.99855 0.95458 0.95824 1.70043 1.37550 1.22036 1.19653 0.85685 0.80017 0.78348 0.79255 1.19783 1.20168 1.19094 1.21140 1.03307 1.01916 0.99334 1.20619 0.93923 0.97364 0.94352 0.91896 0.92723 0.91927 0.90143 0.89013 0.91098 0.89447 0.90678 0.89081 0.93358 0.93300 0.91161 0.91130 0.86889 0.86203 0.91851 0.85264 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.52 37.16 0.35 -1.14 16 2 C -0.15 -1.37 4.55 -26.73 -0.12 -1.49 16 3 C 0.13 1.41 0.75 -91.78 -0.07 1.34 16 4 C -0.18 -1.63 8.18 37.16 0.30 -1.32 16 5 O -0.36 -4.17 9.21 -55.19 -0.51 -4.68 16 6 C 0.02 0.17 10.21 101.05 1.03 1.21 16 7 C 0.47 6.85 5.37 36.01 0.19 7.04 16 8 O -0.49 -8.55 16.25 -25.48 -0.41 -8.97 16 9 O -0.35 -5.13 10.01 -39.27 -0.39 -5.52 16 10 C 0.13 1.95 5.59 36.01 0.20 2.15 16 11 C -0.20 -3.49 5.52 -104.57 -0.58 -4.07 16 12 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 13 C -0.20 -4.01 9.99 -39.39 -0.39 -4.41 16 14 C 0.16 3.83 6.65 -39.10 -0.26 3.57 16 15 O -0.17 -4.76 9.76 0.07 0.00 -4.76 16 16 C -0.39 -10.70 9.49 30.89 0.29 -10.40 16 17 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 18 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 19 N -0.86 -24.60 13.67 55.48 0.76 -23.84 16 20 Si 0.94 19.97 29.55 -169.99 -5.02 14.94 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 24 C -0.24 -5.01 9.17 -39.39 -0.36 -5.37 16 25 C -0.04 -0.80 9.69 -39.61 -0.38 -1.18 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.63 7.22 -51.93 -0.37 0.26 16 28 H 0.06 0.61 7.68 -51.93 -0.40 0.21 16 29 H 0.08 0.56 6.54 -51.92 -0.34 0.22 16 30 H 0.09 0.88 8.11 -51.93 -0.42 0.45 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.81 8.11 -51.93 -0.42 0.39 16 33 H 0.07 0.51 6.55 -51.93 -0.34 0.17 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.28 6.42 -51.93 -0.33 -0.05 16 36 H 0.05 0.29 6.42 -51.93 -0.33 -0.04 16 37 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 38 H 0.07 1.00 8.07 -51.93 -0.42 0.58 16 39 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.12 2.35 8.06 -52.48 -0.42 1.93 16 41 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.13 2.71 5.64 -52.49 -0.30 2.41 16 43 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 360.58 15.07 5.43 5.43 Total: -1.00 -31.91 360.58 -6.46 -38.36 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.04 Total: 3.33 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -0.27 Total: -14.30 kcal Atomic # 7 Polarization: -24.60 SS G_CDS: 0.76 Total: -23.84 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -1.31 Total: -23.93 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.91 -6.46 -38.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796398446.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.110 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds