Wall clock time and date at job start Fri Apr 10 2020 22:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47824 * 2 1 4 4 C 1.52998 * 109.47343 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.47322 * 300.00396 * 3 2 1 6 6 C 1.42905 * 113.99760 * 300.00071 * 5 3 2 7 7 C 1.50700 * 109.47070 * 59.99909 * 3 2 1 8 8 O 1.20825 * 120.00357 * 240.00345 * 7 3 2 9 9 O 1.34233 * 119.99863 * 59.99822 * 7 3 2 10 10 C 1.45203 * 117.00017 * 180.02562 * 9 7 3 11 11 C 1.50701 * 109.46924 * 180.02562 * 10 9 7 12 12 C 1.38302 * 119.92711 * 269.72217 * 11 10 9 13 13 C 1.38100 * 120.06401 * 179.72501 * 12 11 10 14 14 C 1.38882 * 119.93308 * 0.57310 * 13 12 11 15 15 O 1.35749 * 120.07291 * 179.67664 * 14 13 12 16 16 C 1.34824 * 117.00100 * 174.48840 * 15 14 13 17 17 H 1.08001 * 120.00422 * 5.06301 * 16 15 14 18 18 C 1.38656 * 120.00110 * 185.05866 * 16 15 14 19 19 N 1.31564 * 119.99646 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00350 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46992 * 90.00103 * 20 18 16 22 22 H 1.48495 * 109.47302 * 210.00183 * 20 18 16 23 23 H 1.48501 * 109.46860 * 330.00353 * 20 18 16 24 24 C 1.38886 * 119.85961 * 359.70533 * 14 13 12 25 25 C 1.38095 * 119.92904 * 359.97438 * 24 14 13 26 26 H 1.08995 * 109.47920 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46785 * 300.00029 * 1 2 3 28 28 H 1.08998 * 109.46896 * 59.99663 * 1 2 3 29 29 H 1.09007 * 109.47023 * 239.99536 * 2 1 3 30 30 H 1.09007 * 109.47009 * 120.00538 * 2 1 3 31 31 H 1.09000 * 109.47065 * 179.97438 * 4 3 2 32 32 H 1.08998 * 109.47300 * 300.00289 * 4 3 2 33 33 H 1.09007 * 109.46836 * 60.00263 * 4 3 2 34 34 H 1.08994 * 109.47424 * 180.02562 * 6 5 3 35 35 H 1.09004 * 109.46858 * 299.99730 * 6 5 3 36 36 H 1.08994 * 109.47331 * 59.99475 * 6 5 3 37 37 H 1.09000 * 109.46762 * 300.00003 * 10 9 7 38 38 H 1.08993 * 109.47276 * 60.00225 * 10 9 7 39 39 H 1.07995 * 119.97011 * 359.97438 * 12 11 10 40 40 H 1.08003 * 120.03800 * 180.27358 * 13 12 11 41 41 H 0.97005 * 119.99344 * 180.02562 * 19 18 16 42 42 H 1.08001 * 120.03187 * 179.97438 * 24 14 13 43 43 H 1.08004 * 119.96486 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 3.5702 1.4422 0.0006 5 8 1.5639 2.1161 -1.1667 6 6 1.9854 1.5198 -2.3951 7 6 1.5379 2.1528 1.2304 8 8 0.8433 3.1353 1.1197 9 8 1.8621 1.6941 2.4496 10 6 1.3425 2.4281 3.5897 11 6 1.8075 1.7715 4.8640 12 6 1.0393 0.7823 5.4506 13 6 1.4655 0.1747 6.6152 14 6 2.6609 0.5663 7.2038 15 8 3.0793 -0.0244 8.3522 16 6 4.3002 0.3205 8.8084 17 1 4.8633 1.0964 8.3110 18 6 4.8331 -0.3209 9.9162 19 7 4.1474 -1.2664 10.5219 20 14 6.5250 0.1564 10.5479 21 1 6.3904 1.2427 11.5514 22 1 7.1687 -1.0236 11.1790 23 1 7.3608 0.6295 9.4152 24 6 3.4272 1.5641 6.6154 25 6 2.9988 2.1631 5.4472 26 1 -0.3635 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.9336 2.4699 0.0002 32 1 3.9331 0.9285 0.8908 33 1 3.9338 0.9282 -0.8892 34 1 1.5831 2.0896 -3.2325 35 1 3.0743 1.5213 -2.4448 36 1 1.6209 0.4938 -2.4447 37 1 1.7061 3.4551 3.5569 38 1 0.2531 2.4271 3.5566 39 1 0.1073 0.4818 4.9953 40 1 0.8674 -0.6008 7.0706 41 1 4.5200 -1.7148 11.2972 42 1 4.3570 1.8710 7.0709 43 1 3.5944 2.9387 4.9888 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000796398446.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:05:20 Heat of formation + Delta-G solvation = -153.733243 kcal Electronic energy + Delta-G solvation = -25138.385534 eV Core-core repulsion = 21342.162345 eV Total energy + Delta-G solvation = -3796.223188 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.95099 -40.83199 -39.68359 -38.47473 -37.29800 -34.65616 -34.34214 -32.16441 -31.84700 -31.25582 -28.23824 -27.82987 -26.68600 -25.04689 -23.89881 -23.69608 -22.21081 -21.24311 -19.90817 -18.96826 -18.55136 -18.35839 -17.62545 -16.82218 -16.55601 -16.39348 -16.29520 -16.07575 -15.57069 -15.38627 -14.97096 -14.87992 -14.45510 -14.31398 -14.21865 -14.09395 -13.79567 -13.56008 -13.47394 -13.13619 -13.04442 -12.91275 -12.64141 -12.44623 -12.33706 -12.30632 -12.14041 -12.10362 -11.89604 -11.71781 -11.21261 -11.19558 -10.81544 -10.64554 -9.84928 -9.07006 -8.49167 -6.17538 0.38874 0.54923 1.07708 1.36337 1.40378 1.50837 1.53994 2.17016 2.75471 2.95685 3.13610 3.44339 3.48360 3.58543 3.75083 3.86205 3.89393 4.13282 4.21631 4.27671 4.30989 4.36465 4.47845 4.51767 4.53839 4.60746 4.69751 4.72886 4.75704 4.88080 4.97561 4.98564 5.04574 5.11653 5.13654 5.21428 5.26851 5.34623 5.50178 5.65144 5.67775 5.99880 6.03470 6.10576 6.67870 6.95394 7.73162 8.73481 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.025086 B = 0.002608 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.905722 B =10732.770038 C =11000.419919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.145 4.145 3 C 0.126 3.874 4 C -0.176 4.176 5 O -0.386 6.386 6 C 0.016 3.984 7 C 0.472 3.528 8 O -0.527 6.527 9 O -0.347 6.347 10 C 0.129 3.871 11 C -0.180 4.180 12 C -0.040 4.040 13 C -0.204 4.204 14 C 0.127 3.873 15 O -0.225 6.225 16 C -0.415 4.415 17 H 0.104 0.896 18 C -0.021 4.021 19 N -0.918 5.918 20 Si 1.019 2.981 21 H -0.264 1.264 22 H -0.271 1.271 23 H -0.252 1.252 24 C -0.244 4.244 25 C -0.042 4.042 26 H 0.079 0.921 27 H 0.030 0.970 28 H 0.060 0.940 29 H 0.110 0.890 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.149 0.851 40 H 0.120 0.880 41 H 0.274 0.726 42 H 0.125 0.875 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 3.518 -23.880 24.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.182 4.182 3 C 0.086 3.914 4 C -0.233 4.233 5 O -0.306 6.306 6 C -0.079 4.079 7 C 0.315 3.685 8 O -0.416 6.416 9 O -0.264 6.264 10 C 0.057 3.943 11 C -0.181 4.181 12 C -0.058 4.058 13 C -0.224 4.224 14 C 0.076 3.924 15 O -0.131 6.131 16 C -0.491 4.491 17 H 0.122 0.878 18 C -0.219 4.219 19 N -0.555 5.555 20 Si 0.838 3.162 21 H -0.188 1.188 22 H -0.196 1.196 23 H -0.175 1.175 24 C -0.263 4.263 25 C -0.060 4.060 26 H 0.097 0.903 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.128 0.872 30 H 0.108 0.892 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.166 0.834 40 H 0.138 0.862 41 H 0.083 0.917 42 H 0.142 0.858 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.987 3.678 -23.540 23.908 hybrid contribution 0.535 0.088 0.856 1.013 sum -1.451 3.765 -22.684 23.040 Atomic orbital electron populations 1.21748 0.95100 1.02802 1.01345 1.22203 0.97174 0.92970 1.05858 1.21024 0.95716 0.92088 0.82611 1.22426 0.91063 1.03999 1.05799 1.87997 1.74858 1.54123 1.13645 1.23167 1.00824 0.99623 0.84301 1.23607 0.77046 0.82379 0.85437 1.90643 1.36358 1.27021 1.87579 1.86593 1.69593 1.55838 1.14357 1.21698 0.98886 0.94253 0.79491 1.19177 0.98222 1.03318 0.97398 1.20878 0.99129 0.92968 0.92823 1.20438 0.96984 1.05528 0.99413 1.19991 0.94258 0.91924 0.86257 1.83949 1.34531 1.60781 1.33857 1.21856 0.92072 1.21662 1.13522 0.87824 1.26602 1.04243 0.95247 0.95784 1.70184 1.40047 1.24360 1.20949 0.84584 0.74496 0.78220 0.78926 1.18849 1.19622 1.17521 1.21239 1.03085 1.01704 1.00288 1.20945 0.94467 0.97489 0.93092 0.90254 0.95045 0.92132 0.87215 0.89204 0.91770 0.89640 0.87844 0.88111 0.91829 0.91804 0.90081 0.89918 0.83380 0.86212 0.91730 0.85750 0.84135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.52 71.98 0.69 -1.96 16 2 C -0.14 -2.24 4.55 30.59 0.14 -2.10 16 3 C 0.13 2.51 0.75 -11.54 -0.01 2.50 16 4 C -0.18 -2.68 8.18 71.98 0.59 -2.09 16 5 O -0.39 -8.11 9.21 -129.90 -1.20 -9.31 16 6 C 0.02 0.18 10.21 113.37 1.16 1.34 16 7 C 0.47 12.73 5.37 71.24 0.38 13.12 16 8 O -0.53 -17.51 16.25 28.40 0.46 -17.05 16 9 O -0.35 -9.41 10.01 -51.44 -0.51 -9.92 16 10 C 0.13 3.50 5.59 71.24 0.40 3.90 16 11 C -0.18 -5.71 5.52 -19.83 -0.11 -5.81 16 12 C -0.04 -1.32 9.69 22.25 0.22 -1.10 16 13 C -0.20 -8.42 9.99 22.39 0.22 -8.20 16 14 C 0.13 6.14 6.65 22.58 0.15 6.29 16 15 O -0.23 -13.23 9.76 -22.67 -0.22 -13.45 16 16 C -0.42 -23.59 9.49 67.92 0.64 -22.94 16 17 H 0.10 5.37 5.20 -2.91 -0.02 5.35 16 18 C -0.02 -1.15 5.49 84.83 0.47 -0.69 16 19 N -0.92 -55.30 13.67 21.61 0.30 -55.01 16 20 Si 1.02 41.79 29.55 68.60 2.03 43.82 16 21 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 22 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 23 H -0.25 -9.54 7.11 99.48 0.71 -8.84 16 24 C -0.24 -10.29 9.17 22.39 0.21 -10.09 16 25 C -0.04 -1.42 9.69 22.25 0.22 -1.21 16 26 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.03 0.67 7.22 -2.39 -0.02 0.66 16 28 H 0.06 1.06 7.68 -2.39 -0.02 1.04 16 29 H 0.11 1.06 6.54 -2.38 -0.02 1.05 16 30 H 0.09 1.45 8.11 -2.38 -0.02 1.43 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.34 8.11 -2.39 -0.02 1.32 16 33 H 0.10 0.97 6.55 -2.38 -0.02 0.96 16 34 H 0.10 0.91 8.14 -2.39 -0.02 0.90 16 35 H 0.06 0.51 6.42 -2.38 -0.02 0.49 16 36 H 0.06 0.51 6.42 -2.39 -0.02 0.50 16 37 H 0.08 2.08 8.08 -2.39 -0.02 2.06 16 38 H 0.08 2.09 8.07 -2.39 -0.02 2.07 16 39 H 0.15 3.86 8.06 -2.91 -0.02 3.83 16 40 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 41 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 42 H 0.12 5.29 5.64 -2.91 -0.02 5.27 16 43 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -73.65 360.58 7.22 -66.43 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 1.02 Total: 23.55 kcal Atomic # 6 Polarization: -34.41 SS G_CDS: 5.35 Total: -29.05 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.30 Total: -55.01 kcal Atomic # 8 Polarization: -48.26 SS G_CDS: -1.47 Total: -49.73 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -73.65 7.22 -66.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796398446.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.306 kcal (2) G-P(sol) polarization free energy of solvation -73.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds