Wall clock time and date at job start Fri Apr 10 2020 22:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45196 * 109.47262 * 2 1 4 4 C 1.34236 * 117.00341 * 180.02562 * 3 2 1 5 5 O 1.20820 * 119.99700 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00335 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47410 * 179.97438 * 6 4 3 8 8 H 1.09003 * 109.46965 * 54.48397 * 7 6 4 9 9 C 1.50700 * 109.47216 * 174.48195 * 7 6 4 10 10 H 1.07994 * 119.99885 * 94.99909 * 9 7 6 11 11 C 1.37872 * 120.00288 * 274.99523 * 9 7 6 12 12 N 1.31507 * 120.00297 * 185.02124 * 11 9 7 13 13 Si 1.86808 * 119.99824 * 5.02174 * 11 9 7 14 14 H 1.48505 * 109.46906 * 84.82885 * 13 11 9 15 15 H 1.48496 * 109.47075 * 204.82485 * 13 11 9 16 16 H 1.48493 * 109.47241 * 324.82589 * 13 11 9 17 17 O 1.42899 * 109.47323 * 294.48679 * 7 6 4 18 18 C 1.42898 * 114.00289 * 149.99551 * 17 7 6 19 19 C 1.52996 * 109.47338 * 180.02562 * 18 17 7 20 20 O 1.42899 * 109.47301 * 64.99972 * 19 18 17 21 21 C 1.35897 * 117.00299 * 180.02562 * 20 19 18 22 22 C 1.38731 * 120.05414 * 359.72794 * 21 20 19 23 23 C 1.38146 * 119.94571 * 179.74089 * 22 21 20 24 24 C 1.38266 * 120.05385 * 0.51020 * 23 22 21 25 25 C 1.38271 * 120.10959 * 359.76618 * 24 23 22 26 26 C 1.38144 * 120.05599 * 359.97438 * 25 24 23 27 27 H 1.08996 * 109.47018 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47258 * 299.99829 * 1 2 3 29 29 H 1.09005 * 109.47263 * 59.99857 * 1 2 3 30 30 H 1.09002 * 109.47258 * 240.00171 * 2 1 3 31 31 H 1.08995 * 109.47370 * 120.00213 * 2 1 3 32 32 H 1.08998 * 109.47353 * 59.99420 * 6 4 3 33 33 H 1.09001 * 109.46665 * 299.99980 * 6 4 3 34 34 H 0.97008 * 120.00108 * 180.02562 * 12 11 9 35 35 H 1.09001 * 109.46791 * 60.00040 * 18 17 7 36 36 H 1.09005 * 109.47089 * 300.00507 * 18 17 7 37 37 H 1.09007 * 109.47059 * 305.00362 * 19 18 17 38 38 H 1.08995 * 109.47216 * 185.00710 * 19 18 17 39 39 H 1.08003 * 120.03058 * 359.97438 * 22 21 20 40 40 H 1.07995 * 119.97425 * 180.27596 * 23 22 21 41 41 H 1.08000 * 119.94836 * 179.73983 * 24 23 22 42 42 H 1.08002 * 119.97301 * 179.97438 * 25 24 23 43 43 H 1.08001 * 120.02807 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9208 2.9374 0.0000 7 6 5.4487 2.8573 -0.0001 8 1 5.7802 2.2425 -0.8369 9 6 6.0243 4.2434 -0.1362 10 1 6.3106 4.7981 0.7451 11 6 6.1855 4.8034 -1.3857 12 7 6.7779 5.9706 -1.5118 13 14 5.5623 3.9039 -2.8998 14 1 4.1232 4.2106 -3.1004 15 1 6.3331 4.3451 -4.0899 16 1 5.7352 2.4410 -2.7126 17 8 5.8953 2.2743 1.2257 18 6 7.1183 1.5443 1.1105 19 6 7.4983 0.9670 2.4755 20 8 6.5200 0.0050 2.8748 21 6 6.7094 -0.6064 4.0737 22 6 7.8170 -0.2910 4.8472 23 6 8.0044 -0.9099 6.0679 24 6 7.0948 -1.8507 6.5142 25 6 5.9931 -2.1710 5.7426 26 6 5.7984 -1.5510 4.5235 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.5852 3.4691 0.8904 33 1 3.5844 3.4700 -0.8895 34 1 6.8910 6.3648 -2.3910 35 1 7.9082 2.2112 0.7650 36 1 6.9904 0.7315 0.3955 37 1 7.5391 1.7704 3.2111 38 1 8.4742 0.4864 2.4078 39 1 8.5302 0.4406 4.4970 40 1 8.8642 -0.6614 6.6725 41 1 7.2453 -2.3366 7.4670 42 1 5.2842 -2.9065 6.0931 43 1 4.9379 -1.8018 3.9210 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204959168.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:07:25 Heat of formation + Delta-G solvation = -169.142346 kcal Electronic energy + Delta-G solvation = -25457.253221 eV Core-core repulsion = 21660.361844 eV Total energy + Delta-G solvation = -3796.891377 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.48433 -41.02426 -39.09552 -38.18278 -37.40770 -35.07381 -33.33636 -32.50042 -31.97091 -31.19040 -29.85719 -28.28637 -24.82025 -24.34460 -23.31824 -23.11185 -22.35939 -21.60530 -19.48706 -19.24561 -18.52568 -18.13032 -17.48645 -17.29089 -17.01407 -16.67232 -16.50190 -16.16034 -15.66160 -15.20843 -15.11305 -15.07719 -14.61542 -14.35469 -14.29130 -13.81298 -13.67741 -13.59372 -13.43022 -13.22622 -12.95070 -12.77227 -12.55203 -12.49167 -12.41704 -12.22852 -11.93353 -11.80963 -11.67017 -11.52138 -11.44001 -11.36757 -10.89777 -10.18682 -9.94487 -9.14073 -8.40225 -6.49522 0.40205 0.51741 1.23966 1.26240 1.32057 1.38700 1.74452 2.22678 2.26393 2.85225 2.87841 2.97885 3.83093 3.84564 3.98117 3.99590 4.06912 4.10806 4.12636 4.23680 4.30195 4.31363 4.34197 4.45748 4.46509 4.52306 4.61306 4.67956 4.75019 4.83501 4.85512 4.91974 5.09049 5.09930 5.17722 5.37586 5.40600 5.48597 5.49425 5.60022 5.90966 6.06149 6.44769 6.51803 6.69516 6.81846 7.21548 8.75609 Molecular weight = 308.15amu Principal moments of inertia in cm(-1) A = 0.010949 B = 0.004430 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.647185 B = 6319.670635 C = 8508.964282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 O -0.366 6.366 4 C 0.462 3.538 5 O -0.525 6.525 6 C -0.110 4.110 7 C 0.203 3.797 8 H 0.026 0.974 9 C -0.543 4.543 10 H 0.045 0.955 11 C 0.037 3.963 12 N -0.928 5.928 13 Si 0.913 3.087 14 H -0.246 1.246 15 H -0.276 1.276 16 H -0.257 1.257 17 O -0.392 6.392 18 C 0.071 3.929 19 C 0.072 3.928 20 O -0.329 6.329 21 C 0.105 3.895 22 C -0.224 4.224 23 C -0.083 4.083 24 C -0.164 4.164 25 C -0.081 4.081 26 C -0.178 4.178 27 H 0.103 0.897 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.273 0.727 35 H 0.070 0.930 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.135 0.865 40 H 0.150 0.850 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.912 -15.915 9.766 19.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 O -0.284 6.284 4 C 0.306 3.694 5 O -0.413 6.413 6 C -0.148 4.148 7 C 0.146 3.854 8 H 0.043 0.957 9 C -0.580 4.580 10 H 0.063 0.937 11 C -0.164 4.164 12 N -0.566 5.566 13 Si 0.736 3.264 14 H -0.170 1.170 15 H -0.201 1.201 16 H -0.182 1.182 17 O -0.312 6.312 18 C -0.005 4.005 19 C -0.002 4.002 20 O -0.243 6.243 21 C 0.059 3.941 22 C -0.243 4.243 23 C -0.101 4.101 24 C -0.182 4.182 25 C -0.098 4.098 26 C -0.197 4.197 27 H 0.122 0.878 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.133 0.867 33 H 0.128 0.872 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.118 0.882 39 H 0.153 0.847 40 H 0.168 0.832 41 H 0.171 0.829 42 H 0.172 0.828 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.921 -16.080 9.657 19.392 hybrid contribution 0.349 0.232 -1.179 1.251 sum -4.572 -15.848 8.478 18.546 Atomic orbital electron populations 1.21813 0.89880 1.04470 1.03745 1.23294 0.97448 0.79547 1.02184 1.86536 1.24057 1.33709 1.84078 1.24265 0.80553 0.93203 0.71416 1.90602 1.60956 1.43786 1.45991 1.22025 0.96746 0.89872 1.06144 1.19798 0.89189 0.91976 0.84463 0.95670 1.21483 1.42540 1.00314 0.93684 0.93720 1.25648 0.93904 0.95390 1.01455 1.70002 1.42494 1.18713 1.25399 0.86293 0.80650 0.79958 0.79523 1.16960 1.20087 1.18170 1.87707 1.40025 1.69823 1.33646 1.22400 0.88244 0.94147 0.95757 1.22910 0.91307 0.90372 0.95642 1.86197 1.50263 1.53871 1.33972 1.19526 0.95387 0.93573 0.85568 1.21525 0.99106 1.05582 0.98049 1.21332 0.99595 0.94790 0.94352 1.21447 0.95246 0.99864 1.01640 1.21295 0.98023 0.98308 0.92202 1.20684 1.00447 0.99446 0.99123 0.87835 0.91262 0.91185 0.91652 0.91869 0.86717 0.87157 0.91802 0.91165 0.93942 0.91181 0.88196 0.84719 0.83185 0.82930 0.82841 0.86164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 10.29 71.98 0.74 -1.85 16 2 C 0.05 1.32 6.19 71.98 0.45 1.76 16 3 O -0.37 -12.70 10.22 -51.47 -0.53 -13.22 16 4 C 0.46 18.96 7.84 71.23 0.56 19.52 16 5 O -0.52 -23.95 15.18 26.93 0.41 -23.54 16 6 C -0.11 -4.72 5.26 29.85 0.16 -4.56 16 7 C 0.20 9.96 1.22 29.85 0.04 10.00 16 8 H 0.03 1.29 5.17 -2.39 -0.01 1.28 16 9 C -0.54 -30.28 9.21 25.60 0.24 -30.05 16 10 H 0.04 2.79 8.06 -2.91 -0.02 2.77 16 11 C 0.04 2.04 5.47 84.65 0.46 2.50 16 12 N -0.93 -54.93 13.96 21.44 0.30 -54.63 16 13 Si 0.91 41.51 25.90 68.60 1.78 43.29 16 14 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 15 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 16 H -0.26 -11.57 6.14 99.48 0.61 -10.96 16 17 O -0.39 -18.85 9.21 -129.29 -1.19 -20.04 16 18 C 0.07 2.92 6.12 71.98 0.44 3.37 16 19 C 0.07 2.43 5.12 71.98 0.37 2.80 16 20 O -0.33 -12.35 10.10 -87.76 -0.89 -13.23 16 21 C 0.10 3.30 6.69 22.50 0.15 3.45 16 22 C -0.22 -5.80 9.04 22.37 0.20 -5.59 16 23 C -0.08 -1.68 10.04 22.25 0.22 -1.45 16 24 C -0.16 -3.01 10.04 22.28 0.22 -2.79 16 25 C -0.08 -1.67 10.04 22.26 0.22 -1.45 16 26 C -0.18 -4.99 9.99 22.36 0.22 -4.77 16 27 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.07 1.75 8.13 -2.39 -0.02 1.73 16 31 H 0.06 1.75 8.13 -2.39 -0.02 1.73 16 32 H 0.11 4.69 8.14 -2.39 -0.02 4.68 16 33 H 0.11 4.50 6.41 -2.39 -0.02 4.49 16 34 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 35 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 36 H 0.04 1.78 8.09 -2.38 -0.02 1.76 16 37 H 0.07 2.29 7.67 -2.38 -0.02 2.27 16 38 H 0.10 2.65 7.65 -2.39 -0.02 2.63 16 39 H 0.14 3.15 6.30 -2.91 -0.02 3.13 16 40 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 41 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 42 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 43 H 0.12 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -71.38 364.33 5.47 -65.90 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.90 Total: 24.59 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 4.69 Total: -9.11 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: 0.30 Total: -54.63 kcal Atomic # 8 Polarization: -67.84 SS G_CDS: -2.19 Total: -70.03 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 1.78 Total: 43.29 kcal Total: -71.38 5.47 -65.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204959168.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.241 kcal (2) G-P(sol) polarization free energy of solvation -71.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds