Wall clock time and date at job start Fri Apr 10 2020 22:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48493 * 109.47074 * 269.99700 * 3 2 1 5 5 H 1.48499 * 109.47233 * 30.00445 * 3 2 1 6 6 H 1.48501 * 109.46650 * 150.00079 * 3 2 1 7 7 C 1.37870 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00531 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99837 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47374 * 180.02562 * 9 7 2 11 11 C 1.46899 * 110.99886 * 65.69616 * 10 9 7 12 12 C 1.53238 * 109.33827 * 187.25652 * 11 10 9 13 13 N 1.47077 * 108.52207 * 306.17054 * 12 11 10 14 14 C 1.34778 * 120.88455 * 231.16455 * 13 12 11 15 15 O 1.21288 * 120.00081 * 354.62847 * 14 13 12 16 16 C 1.50699 * 120.00050 * 174.63162 * 14 13 12 17 17 C 1.50696 * 110.91440 * 300.76880 * 16 14 13 18 18 O 1.20830 * 119.99682 * 125.83760 * 17 16 14 19 19 O 1.34225 * 120.00064 * 305.83845 * 17 16 14 20 20 C 1.54640 * 111.03405 * 176.76306 * 16 14 13 21 21 C 1.51105 * 104.72431 * 266.59582 * 20 16 14 22 22 C 1.30531 * 111.10777 * 343.56822 * 21 20 16 23 23 C 1.51103 * 111.10119 * 359.97438 * 22 21 20 24 24 C 1.47076 * 118.23716 * 51.19061 * 13 12 11 25 25 C 1.46891 * 111.00325 * 190.00470 * 10 9 7 26 26 H 0.96997 * 119.99728 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47215 * 60.00700 * 9 7 2 28 28 H 1.09000 * 109.47553 * 300.00213 * 9 7 2 29 29 H 1.09002 * 109.49397 * 67.30018 * 11 10 9 30 30 H 1.08994 * 109.49711 * 307.21638 * 11 10 9 31 31 H 1.09005 * 109.62995 * 186.46029 * 12 11 10 32 32 H 1.08994 * 109.63376 * 65.88582 * 12 11 10 33 33 H 0.96706 * 117.00067 * 179.97438 * 19 17 16 34 34 H 1.08998 * 110.38771 * 25.41005 * 20 16 14 35 35 H 1.08997 * 110.38218 * 147.79181 * 20 16 14 36 36 H 1.08004 * 124.44769 * 163.53865 * 21 20 16 37 37 H 1.07994 * 124.44908 * 179.97438 * 22 21 20 38 38 H 1.09002 * 110.38871 * 257.62868 * 23 22 21 39 39 H 1.09000 * 110.48930 * 135.29824 * 23 22 21 40 40 H 1.09002 * 109.63482 * 68.51879 * 24 13 12 41 41 H 1.09000 * 109.63095 * 188.91056 * 24 13 12 42 42 H 1.08997 * 109.49953 * 52.78399 * 25 10 9 43 43 H 1.09009 * 109.49388 * 292.70326 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5791 0.0001 11 6 3.6440 -3.2638 -1.2495 12 6 4.0098 -4.7477 -1.1375 13 7 5.4258 -4.8522 -0.7538 14 6 6.2755 -5.6325 -1.4506 15 8 5.8576 -6.3351 -2.3465 16 6 7.7450 -5.6322 -1.1163 17 6 8.3299 -4.2512 -1.2636 18 8 8.9284 -3.7473 -0.3429 19 8 8.1859 -3.5810 -2.4176 20 6 8.5120 -6.6563 -1.9848 21 6 8.5472 -7.9164 -1.1517 22 6 8.2632 -7.6626 0.0968 23 6 7.9918 -6.1907 0.3046 24 6 5.8898 -4.0830 0.4107 25 6 5.4500 -2.6252 0.2378 26 1 -0.4849 0.8400 -0.0004 27 1 3.8752 -0.6797 0.8895 28 1 3.8746 -0.6808 -0.8905 29 1 4.1914 -2.8159 -2.0790 30 1 2.5728 -3.1655 -1.4249 31 1 3.8539 -5.2369 -2.0990 32 1 3.3886 -5.2216 -0.3776 33 1 8.5780 -2.6982 -2.4645 34 1 7.9812 -6.8341 -2.9200 35 1 9.5242 -6.3036 -2.1827 36 1 8.7767 -8.8984 -1.5385 37 1 8.2269 -8.4068 0.8786 38 1 8.8558 -5.7057 0.7590 39 1 7.1077 -6.0498 0.9263 40 1 5.4493 -4.4929 1.3196 41 1 6.9767 -4.1354 0.4747 42 1 5.6886 -2.0637 1.1410 43 1 5.9723 -2.1862 -0.6124 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331978517.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:06:16 Heat of formation + Delta-G solvation = -78.733087 kcal Electronic energy + Delta-G solvation = -26931.006173 eV Core-core repulsion = 23170.327986 eV Total energy + Delta-G solvation = -3760.678186 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.80191 -39.71198 -38.38680 -37.31217 -36.39635 -34.66074 -32.44429 -31.41577 -30.33615 -28.88068 -28.41773 -25.88277 -24.10557 -23.57945 -22.56066 -21.29498 -20.13375 -19.56142 -19.09336 -18.11223 -17.70500 -16.97235 -16.66000 -16.33368 -15.78400 -14.99793 -14.76051 -14.63355 -14.57749 -14.22771 -14.15823 -13.57392 -13.27791 -13.00138 -12.88702 -12.81867 -12.64812 -12.42191 -12.16781 -11.90537 -11.73524 -11.62562 -11.48156 -11.29719 -11.02129 -10.93331 -10.86050 -10.69123 -10.35729 -9.92179 -9.85611 -9.37573 -9.21121 -8.66038 -8.62695 -7.54706 -6.11446 -4.09682 1.71023 1.94882 2.25695 2.71606 2.84663 3.23401 3.31670 3.32518 3.98229 4.06358 4.21041 4.36076 4.53801 4.81374 4.87759 5.01150 5.02538 5.16964 5.25366 5.26358 5.28974 5.35947 5.45267 5.53194 5.54649 5.67388 5.69793 5.80713 5.87919 6.00126 6.10764 6.18578 6.24542 6.40141 6.52252 6.55523 6.74935 6.86807 7.30260 7.48932 7.49786 7.75283 7.89278 7.99788 8.56361 8.95891 9.49685 11.01397 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.025167 B = 0.003817 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.292171 B = 7333.212118 C = 7762.129404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.875 3.125 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.512 4.512 8 H 0.082 0.918 9 C 0.163 3.837 10 N -0.524 5.524 11 C 0.050 3.950 12 C 0.117 3.883 13 N -0.602 5.602 14 C 0.538 3.462 15 O -0.524 6.524 16 C -0.084 4.084 17 C 0.503 3.497 18 O -0.500 6.500 19 O -0.503 6.503 20 C -0.076 4.076 21 C -0.154 4.154 22 C -0.166 4.166 23 C -0.088 4.088 24 C 0.094 3.906 25 C 0.040 3.960 26 H 0.264 0.736 27 H 0.030 0.970 28 H -0.016 1.016 29 H 0.026 0.974 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.415 0.585 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.312 -12.259 -1.704 22.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.703 3.297 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.550 4.550 8 H 0.100 0.900 9 C 0.037 3.963 10 N -0.249 5.249 11 C -0.079 4.079 12 C -0.005 4.005 13 N -0.335 5.335 14 C 0.324 3.676 15 O -0.401 6.401 16 C -0.088 4.088 17 C 0.344 3.656 18 O -0.388 6.388 19 O -0.314 6.314 20 C -0.113 4.113 21 C -0.172 4.172 22 C -0.184 4.184 23 C -0.125 4.125 24 C -0.029 4.029 25 C -0.089 4.089 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.002 0.998 29 H 0.044 0.956 30 H 0.124 0.876 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.275 0.725 34 H 0.122 0.878 35 H 0.103 0.897 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.125 0.875 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 18.659 -12.981 -1.530 22.781 hybrid contribution 1.038 2.162 -0.561 2.463 sum 19.697 -10.819 -2.091 22.570 Atomic orbital electron populations 1.69888 1.06105 1.26934 1.50701 1.24889 0.94735 0.98841 0.94738 0.86866 0.80327 0.84082 0.78469 1.20358 1.21071 1.19248 1.20992 0.88516 0.94800 1.50740 0.90000 1.20192 0.97269 0.83643 0.95192 1.61920 1.09576 1.19309 1.34098 1.22406 1.03186 0.91743 0.90575 1.21929 0.79090 0.97703 1.01787 1.48181 1.10563 1.44766 1.29983 1.19454 0.86157 0.80070 0.81935 1.90683 1.77542 1.40795 1.31039 1.21542 0.94997 0.90943 1.01358 1.22457 0.76371 0.86915 0.79815 1.90742 1.39431 1.68319 1.40339 1.84566 1.73919 1.34848 1.38072 1.21289 0.99606 0.91029 0.99390 1.23169 1.00573 0.98330 0.95079 1.23180 1.01336 0.96024 0.97827 1.21595 1.04422 0.94087 0.92381 1.22298 0.99845 0.92147 0.88615 1.22403 0.90841 0.94770 1.00906 0.92573 0.95161 0.99827 0.95584 0.87644 0.89054 0.90374 0.72542 0.87812 0.89652 0.84761 0.84682 0.87500 0.89235 0.89804 0.89363 0.89825 0.95747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.96 55.43 0.77 -26.14 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.05 27.47 -169.99 -4.67 16.38 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.51 -14.06 8.96 -34.44 -0.31 -14.36 16 8 H 0.08 2.43 7.37 -52.49 -0.39 2.04 16 9 C 0.16 3.81 3.79 -4.97 -0.02 3.79 16 10 N -0.52 -10.43 4.62 -235.76 -1.09 -11.52 16 11 C 0.05 0.92 5.46 -3.70 -0.02 0.90 16 12 C 0.12 1.86 6.58 -3.60 -0.02 1.84 16 13 N -0.60 -8.93 3.01 -172.46 -0.52 -9.44 16 14 C 0.54 7.88 6.41 -10.99 -0.07 7.81 16 15 O -0.52 -8.96 15.00 5.55 0.08 -8.88 16 16 C -0.08 -0.99 0.54 -155.08 -0.08 -1.07 16 17 C 0.50 5.94 5.42 36.00 0.20 6.14 16 18 O -0.50 -6.45 15.13 -18.75 -0.28 -6.73 16 19 O -0.50 -5.32 13.28 -39.25 -0.52 -5.84 16 20 C -0.08 -0.78 5.74 -26.82 -0.15 -0.93 16 21 C -0.15 -1.38 10.77 -35.70 -0.38 -1.77 16 22 C -0.17 -1.47 10.78 -35.70 -0.38 -1.86 16 23 C -0.09 -0.89 4.62 -26.82 -0.12 -1.01 16 24 C 0.09 1.29 4.66 -3.60 -0.02 1.28 16 25 C 0.04 0.66 5.62 -3.70 -0.02 0.64 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.03 0.72 7.03 -51.93 -0.36 0.35 16 28 H -0.02 -0.38 7.55 -51.93 -0.39 -0.77 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.11 2.16 6.67 -51.93 -0.35 1.81 16 31 H 0.09 1.45 7.10 -51.93 -0.37 1.08 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.42 2.57 9.10 45.56 0.41 2.98 16 34 H 0.10 1.19 6.97 -51.93 -0.36 0.82 16 35 H 0.09 0.74 7.88 -51.93 -0.41 0.33 16 36 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.11 1.04 6.94 -51.93 -0.36 0.68 16 39 H 0.09 0.91 6.16 -51.93 -0.32 0.59 16 40 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.09 1.11 3.10 -51.93 -0.16 0.94 16 42 H 0.08 1.31 7.99 -51.93 -0.41 0.89 16 43 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 LS Contribution 338.88 15.07 5.11 5.11 Total: -1.00 -33.00 338.88 -7.81 -40.81 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.17 Total: 2.99 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -1.51 Total: 3.28 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.83 Total: -47.10 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.72 Total: -21.46 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.00 -7.81 -40.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331978517.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.927 kcal (2) G-P(sol) polarization free energy of solvation -33.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds