Wall clock time and date at job start Fri Apr 10 2020 22:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48493 * 109.47074 * 269.99700 * 3 2 1 5 5 H 1.48499 * 109.47233 * 30.00445 * 3 2 1 6 6 H 1.48501 * 109.46650 * 150.00079 * 3 2 1 7 7 C 1.37870 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00531 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99837 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47374 * 180.02562 * 9 7 2 11 11 C 1.46899 * 110.99886 * 65.69616 * 10 9 7 12 12 C 1.53238 * 109.33827 * 187.25652 * 11 10 9 13 13 N 1.47077 * 108.52207 * 306.17054 * 12 11 10 14 14 C 1.34778 * 120.88455 * 231.16455 * 13 12 11 15 15 O 1.21288 * 120.00081 * 354.62847 * 14 13 12 16 16 C 1.50699 * 120.00050 * 174.63162 * 14 13 12 17 17 C 1.50696 * 110.91440 * 300.76880 * 16 14 13 18 18 O 1.20830 * 119.99682 * 125.83760 * 17 16 14 19 19 O 1.34225 * 120.00064 * 305.83845 * 17 16 14 20 20 C 1.54640 * 111.03405 * 176.76306 * 16 14 13 21 21 C 1.51105 * 104.72431 * 266.59582 * 20 16 14 22 22 C 1.30531 * 111.10777 * 343.56822 * 21 20 16 23 23 C 1.51103 * 111.10119 * 359.97438 * 22 21 20 24 24 C 1.47076 * 118.23716 * 51.19061 * 13 12 11 25 25 C 1.46891 * 111.00325 * 190.00470 * 10 9 7 26 26 H 0.96997 * 119.99728 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47215 * 60.00700 * 9 7 2 28 28 H 1.09000 * 109.47553 * 300.00213 * 9 7 2 29 29 H 1.09002 * 109.49397 * 67.30018 * 11 10 9 30 30 H 1.08994 * 109.49711 * 307.21638 * 11 10 9 31 31 H 1.09005 * 109.62995 * 186.46029 * 12 11 10 32 32 H 1.08994 * 109.63376 * 65.88582 * 12 11 10 33 33 H 0.96706 * 117.00067 * 179.97438 * 19 17 16 34 34 H 1.08998 * 110.38771 * 25.41005 * 20 16 14 35 35 H 1.08997 * 110.38218 * 147.79181 * 20 16 14 36 36 H 1.08004 * 124.44769 * 163.53865 * 21 20 16 37 37 H 1.07994 * 124.44908 * 179.97438 * 22 21 20 38 38 H 1.09002 * 110.38871 * 257.62868 * 23 22 21 39 39 H 1.09000 * 110.48930 * 135.29824 * 23 22 21 40 40 H 1.09002 * 109.63482 * 68.51879 * 24 13 12 41 41 H 1.09000 * 109.63095 * 188.91056 * 24 13 12 42 42 H 1.08997 * 109.49953 * 52.78399 * 25 10 9 43 43 H 1.09009 * 109.49388 * 292.70326 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5791 0.0001 11 6 3.6440 -3.2638 -1.2495 12 6 4.0098 -4.7477 -1.1375 13 7 5.4258 -4.8522 -0.7538 14 6 6.2755 -5.6325 -1.4506 15 8 5.8576 -6.3351 -2.3465 16 6 7.7450 -5.6322 -1.1163 17 6 8.3299 -4.2512 -1.2636 18 8 8.9284 -3.7473 -0.3429 19 8 8.1859 -3.5810 -2.4176 20 6 8.5120 -6.6563 -1.9848 21 6 8.5472 -7.9164 -1.1517 22 6 8.2632 -7.6626 0.0968 23 6 7.9918 -6.1907 0.3046 24 6 5.8898 -4.0830 0.4107 25 6 5.4500 -2.6252 0.2378 26 1 -0.4849 0.8400 -0.0004 27 1 3.8752 -0.6797 0.8895 28 1 3.8746 -0.6808 -0.8905 29 1 4.1914 -2.8159 -2.0790 30 1 2.5728 -3.1655 -1.4249 31 1 3.8539 -5.2369 -2.0990 32 1 3.3886 -5.2216 -0.3776 33 1 8.5780 -2.6982 -2.4645 34 1 7.9812 -6.8341 -2.9200 35 1 9.5242 -6.3036 -2.1827 36 1 8.7767 -8.8984 -1.5385 37 1 8.2269 -8.4068 0.8786 38 1 8.8558 -5.7057 0.7590 39 1 7.1077 -6.0498 0.9263 40 1 5.4493 -4.4929 1.3196 41 1 6.9767 -4.1354 0.4747 42 1 5.6886 -2.0637 1.1410 43 1 5.9723 -2.1862 -0.6124 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331978517.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:06:15 Heat of formation + Delta-G solvation = -102.743436 kcal Electronic energy + Delta-G solvation = -26932.047340 eV Core-core repulsion = 23170.327986 eV Total energy + Delta-G solvation = -3761.719353 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.76928 -40.78413 -39.55665 -38.39734 -37.29166 -36.14823 -34.46666 -32.61410 -31.43477 -30.39637 -29.31947 -27.47593 -25.05545 -24.82156 -23.93129 -22.89286 -21.36190 -20.40631 -20.10797 -19.14246 -18.88265 -18.62977 -17.68258 -17.51159 -16.75546 -16.55370 -16.22851 -15.95304 -15.78207 -15.74359 -15.21745 -15.05578 -14.50949 -14.45556 -13.92918 -13.89667 -13.82246 -13.57407 -13.33695 -13.07848 -12.91603 -12.79701 -12.55760 -12.54129 -12.41521 -12.31104 -12.26251 -11.97962 -11.79169 -11.78921 -11.46016 -11.03394 -10.79509 -9.96770 -9.88016 -9.14679 -8.28572 -6.32256 0.78638 1.19853 1.30051 1.34395 1.35976 1.46230 1.67416 1.86050 2.33626 2.99722 3.06560 3.10011 3.15944 3.35824 3.80467 3.93283 4.04464 4.04782 4.13500 4.21433 4.24733 4.29608 4.43707 4.54314 4.57629 4.59439 4.72702 4.73851 4.77523 4.80415 4.86080 4.96159 5.00596 5.03133 5.28637 5.32312 5.50403 5.53028 5.87320 5.88311 6.15162 6.23755 6.56748 6.71875 6.74089 6.83083 7.31328 8.87639 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.025167 B = 0.003817 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.292171 B = 7333.212118 C = 7762.129404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.010 3.990 3 Si 0.945 3.055 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.247 1.247 7 C -0.516 4.516 8 H 0.042 0.958 9 C 0.172 3.828 10 N -0.535 5.535 11 C 0.057 3.943 12 C 0.127 3.873 13 N -0.604 5.604 14 C 0.538 3.462 15 O -0.552 6.552 16 C -0.087 4.087 17 C 0.506 3.494 18 O -0.511 6.511 19 O -0.508 6.508 20 C -0.077 4.077 21 C -0.161 4.161 22 C -0.168 4.168 23 C -0.088 4.088 24 C 0.101 3.899 25 C 0.039 3.961 26 H 0.267 0.733 27 H 0.036 0.964 28 H -0.016 1.016 29 H 0.022 0.978 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.433 0.567 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.154 0.846 37 H 0.157 0.843 38 H 0.114 0.886 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.140 -12.277 -1.056 25.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.187 4.187 3 Si 0.768 3.232 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.171 1.171 7 C -0.554 4.554 8 H 0.061 0.939 9 C 0.045 3.955 10 N -0.260 5.260 11 C -0.072 4.072 12 C 0.004 3.996 13 N -0.337 5.337 14 C 0.325 3.675 15 O -0.430 6.430 16 C -0.091 4.091 17 C 0.348 3.652 18 O -0.400 6.400 19 O -0.322 6.322 20 C -0.114 4.114 21 C -0.178 4.178 22 C -0.185 4.185 23 C -0.125 4.125 24 C -0.021 4.021 25 C -0.090 4.090 26 H 0.076 0.924 27 H 0.054 0.946 28 H 0.002 0.998 29 H 0.040 0.960 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.296 0.704 34 H 0.107 0.893 35 H 0.119 0.881 36 H 0.171 0.829 37 H 0.175 0.825 38 H 0.132 0.868 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.125 0.875 42 H 0.114 0.886 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 21.525 -13.002 -0.881 25.163 hybrid contribution 0.124 2.102 -0.814 2.257 sum 21.648 -10.901 -1.695 24.297 Atomic orbital electron populations 1.70042 1.08086 1.28094 1.52422 1.25804 0.95551 1.03006 0.94390 0.85757 0.79596 0.78888 0.78936 1.19641 1.20766 1.17076 1.21223 0.90849 0.93400 1.49969 0.93925 1.19955 0.94471 0.85846 0.95186 1.61815 1.12243 1.17289 1.34614 1.22266 1.01388 0.93470 0.90095 1.21691 0.80284 0.95546 1.02035 1.48210 1.09994 1.45069 1.30397 1.19919 0.87264 0.79192 0.81100 1.90670 1.78353 1.41879 1.32117 1.21604 0.92785 0.91730 1.03015 1.22406 0.76138 0.86818 0.79868 1.90740 1.40049 1.68522 1.40705 1.84540 1.73955 1.36172 1.37545 1.21334 0.99943 0.91439 0.98676 1.23355 1.00821 0.98638 0.95004 1.23376 1.01008 0.95694 0.98437 1.21646 1.04667 0.95022 0.91127 1.22331 1.00908 0.90317 0.88530 1.22520 0.88227 0.96808 1.01451 0.92436 0.94595 0.99822 0.96011 0.90505 0.89052 0.90084 0.70441 0.89341 0.88099 0.82865 0.82545 0.86846 0.89253 0.88686 0.87537 0.88612 0.95621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.19 13.96 21.45 0.30 -57.89 16 2 C 0.01 0.58 5.47 84.65 0.46 1.04 16 3 Si 0.94 43.04 27.47 68.60 1.88 44.92 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.25 -10.36 6.54 99.48 0.65 -9.71 16 7 C -0.52 -28.95 8.96 25.60 0.23 -28.72 16 8 H 0.04 2.66 7.37 -2.91 -0.02 2.64 16 9 C 0.17 7.95 3.79 85.56 0.32 8.27 16 10 N -0.53 -20.98 4.62 -899.82 -4.16 -25.14 16 11 C 0.06 2.14 5.46 86.38 0.47 2.61 16 12 C 0.13 4.04 6.58 86.35 0.57 4.60 16 13 N -0.60 -17.14 3.01 -817.93 -2.46 -19.59 16 14 C 0.54 15.06 6.41 87.66 0.56 15.62 16 15 O -0.55 -18.54 15.00 -3.06 -0.05 -18.59 16 16 C -0.09 -1.87 0.54 -52.55 -0.03 -1.90 16 17 C 0.51 10.82 5.42 71.23 0.39 11.21 16 18 O -0.51 -11.83 15.13 21.95 0.33 -11.50 16 19 O -0.51 -9.74 13.28 -51.37 -0.68 -10.43 16 20 C -0.08 -1.43 5.74 30.54 0.18 -1.25 16 21 C -0.16 -2.50 10.77 26.26 0.28 -2.22 16 22 C -0.17 -2.51 10.78 26.26 0.28 -2.23 16 23 C -0.09 -1.54 4.62 30.54 0.14 -1.40 16 24 C 0.10 2.58 4.66 86.35 0.40 2.98 16 25 C 0.04 1.19 5.62 86.39 0.49 1.67 16 26 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 27 H 0.04 1.63 7.03 -2.39 -0.02 1.61 16 28 H -0.02 -0.73 7.55 -2.39 -0.02 -0.75 16 29 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 3.32 6.67 -2.39 -0.02 3.30 16 31 H 0.09 2.92 7.10 -2.38 -0.02 2.90 16 32 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.43 4.40 9.10 -74.05 -0.67 3.72 16 34 H 0.09 1.94 6.97 -2.39 -0.02 1.92 16 35 H 0.10 1.52 7.88 -2.39 -0.02 1.51 16 36 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 37 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 38 H 0.11 1.88 6.94 -2.39 -0.02 1.86 16 39 H 0.09 1.57 6.16 -2.39 -0.01 1.55 16 40 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.11 2.38 3.10 -2.39 -0.01 2.37 16 42 H 0.10 2.73 7.99 -2.39 -0.02 2.71 16 43 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -71.55 338.88 0.23 -71.32 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.31 Total: 16.61 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: 4.75 Total: 10.28 kcal Atomic # 7 Polarization: -96.31 SS G_CDS: -6.32 Total: -102.62 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -0.40 Total: -40.51 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.88 Total: 44.92 kcal Total: -71.55 0.23 -71.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331978517.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.422 kcal (2) G-P(sol) polarization free energy of solvation -71.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds