Wall clock time and date at job start Fri Apr 10 2020 22:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42892 * 109.47360 * 2 1 4 4 C 1.35903 * 117.00029 * 180.02562 * 3 2 1 5 5 C 1.38755 * 120.05513 * 359.97438 * 4 3 2 6 6 C 1.38117 * 119.94118 * 180.02562 * 5 4 3 7 7 C 1.38289 * 120.05983 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.94380 * 179.97438 * 7 6 5 9 9 H 1.09001 * 109.46949 * 159.99776 * 8 7 6 10 10 C 1.53004 * 109.46774 * 279.99329 * 8 7 6 11 11 N 1.46892 * 109.47481 * 39.99194 * 8 7 6 12 12 C 1.46901 * 110.99957 * 155.00191 * 11 8 7 13 13 C 1.53002 * 109.47210 * 180.02562 * 12 11 8 14 14 C 1.50699 * 109.47136 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99883 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99932 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99836 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00091 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47196 * 90.00166 * 18 16 14 20 20 H 1.48500 * 109.47160 * 210.00202 * 18 16 14 21 21 H 1.48498 * 109.47142 * 330.00285 * 18 16 14 22 22 C 1.38243 * 120.11231 * 359.97438 * 7 6 5 23 23 C 1.38166 * 120.05257 * 0.02562 * 22 7 6 24 24 N 1.48001 * 120.02852 * 180.27124 * 23 22 7 25 25 O 1.21802 * 120.00177 * 359.72859 * 24 23 22 26 26 O 1.21801 * 120.00517 * 179.72788 * 24 23 22 27 27 H 1.09006 * 109.47065 * 60.00162 * 1 2 3 28 28 H 1.08995 * 109.47598 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46920 * 300.00249 * 1 2 3 30 30 H 1.08999 * 109.46920 * 239.99751 * 2 1 3 31 31 H 1.08998 * 109.47220 * 120.00121 * 2 1 3 32 32 H 1.07995 * 120.02997 * 0.02562 * 5 4 3 33 33 H 1.08000 * 119.97105 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.46999 * 300.00113 * 10 8 7 35 35 H 1.08999 * 109.46838 * 59.99974 * 10 8 7 36 36 H 1.08999 * 109.46945 * 180.02562 * 10 8 7 37 37 H 1.00896 * 111.00507 * 278.95841 * 11 8 7 38 38 H 1.09005 * 109.47372 * 300.00343 * 12 11 8 39 39 H 1.08998 * 109.46960 * 60.00073 * 12 11 8 40 40 H 1.08998 * 109.46829 * 299.99901 * 13 12 11 41 41 H 1.08998 * 109.47377 * 59.99988 * 13 12 11 42 42 H 0.97001 * 120.00025 * 179.97438 * 17 16 14 43 43 H 1.08001 * 119.97363 * 180.02562 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 4.2000 0.4256 -0.0005 6 6 5.5689 0.6092 -0.0005 7 6 6.0963 1.8876 0.0000 8 6 7.5903 2.0849 0.0005 9 1 7.8241 3.0900 -0.3507 10 6 8.1281 1.9032 1.4213 11 7 8.2151 1.0974 -0.8895 12 6 9.5104 1.5810 -1.3856 13 6 10.1288 0.5282 -2.3076 14 6 11.4580 1.0240 -2.8161 15 1 11.8248 1.9934 -2.5123 16 6 12.2052 0.2407 -3.6698 17 7 13.3650 0.6737 -4.1139 18 14 11.5704 -1.4356 -4.1957 19 1 10.7625 -1.2929 -5.4335 20 1 12.7188 -2.3405 -4.4557 21 1 10.7253 -2.0059 -3.1161 22 6 5.2553 2.9848 -0.0001 23 6 3.8852 2.8065 0.0000 24 7 2.9854 3.9815 -0.0061 25 8 3.4525 5.1064 -0.0061 26 8 1.7776 3.8238 -0.0111 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.7886 -0.5730 -0.0005 33 1 6.2280 -0.2463 -0.0001 34 1 7.6645 2.6360 2.0818 35 1 7.8942 0.8982 1.7725 36 1 9.2087 2.0464 1.4219 37 1 8.3148 0.2061 -0.4275 38 1 9.3641 2.5081 -1.9400 39 1 10.1772 1.7631 -0.5428 40 1 10.2751 -0.3990 -1.7536 41 1 9.4619 0.3465 -3.1504 42 1 13.8909 0.1224 -4.7142 43 1 5.6696 3.9822 -0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273267345.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:05:08 Heat of formation + Delta-G solvation = -45.287878 kcal Electronic energy + Delta-G solvation = -24904.820424 eV Core-core repulsion = 21145.592531 eV Total energy + Delta-G solvation = -3759.227893 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.23011 -41.45125 -39.69972 -37.71484 -37.50098 -35.30330 -33.66896 -32.95775 -32.47343 -30.74591 -29.37800 -27.50320 -26.09197 -25.16509 -24.32277 -22.93265 -22.24528 -21.91718 -20.15886 -19.72209 -18.98028 -18.79120 -18.60684 -17.25366 -17.20282 -16.86398 -16.29719 -15.93281 -15.85487 -15.31861 -14.97095 -14.77673 -14.56104 -14.41015 -13.99307 -13.83911 -13.38960 -13.21949 -13.19039 -13.12972 -12.86366 -12.73699 -12.63972 -12.50060 -12.23248 -12.14754 -12.02686 -11.91165 -11.75463 -11.71617 -11.52003 -11.39151 -10.75958 -10.66001 -9.60519 -9.32505 -8.28379 -6.33185 -1.15755 -0.04956 0.32399 0.43106 1.39272 1.40341 1.52334 1.82427 2.22639 2.37987 3.06944 3.07794 3.37799 3.50848 3.64151 3.87807 3.91656 4.02953 4.06556 4.12037 4.27141 4.32703 4.41489 4.47417 4.52786 4.58515 4.71603 4.80868 4.86132 4.93341 4.96759 4.98962 5.10609 5.15400 5.23882 5.27552 5.36263 5.38567 5.52651 5.65711 6.01402 6.08314 6.26553 6.53780 6.56682 6.76589 7.31870 8.88367 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017848 B = 0.002812 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.419768 B = 9955.162126 C =10760.140531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.036 3.964 3 O -0.306 6.306 4 C 0.189 3.811 5 C -0.201 4.201 6 C 0.004 3.996 7 C -0.096 4.096 8 C 0.125 3.875 9 H 0.083 0.917 10 C -0.173 4.173 11 N -0.684 5.684 12 C 0.088 3.912 13 C -0.004 4.004 14 C -0.533 4.533 15 H 0.030 0.970 16 C 0.001 3.999 17 N -0.953 5.953 18 Si 0.956 3.044 19 H -0.271 1.271 20 H -0.288 1.288 21 H -0.239 1.239 22 C -0.024 4.024 23 C -0.104 4.104 24 N 0.041 4.959 25 O -0.208 6.208 26 O -0.165 6.165 27 H 0.058 0.942 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.185 0.815 33 H 0.168 0.832 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.349 0.651 38 H 0.052 0.948 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.021 0.979 42 H 0.266 0.734 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.501 -6.429 13.295 28.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.038 4.038 3 O -0.217 6.217 4 C 0.139 3.861 5 C -0.219 4.219 6 C -0.014 4.014 7 C -0.098 4.098 8 C 0.015 3.985 9 H 0.101 0.899 10 C -0.232 4.232 11 N -0.315 5.315 12 C -0.040 4.040 13 C -0.042 4.042 14 C -0.572 4.572 15 H 0.049 0.951 16 C -0.195 4.195 17 N -0.594 5.594 18 Si 0.779 3.221 19 H -0.197 1.197 20 H -0.214 1.214 21 H -0.162 1.162 22 C -0.044 4.044 23 C -0.189 4.189 24 N 0.552 4.448 25 O -0.413 6.413 26 O -0.382 6.382 27 H 0.077 0.923 28 H 0.125 0.875 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.202 0.798 33 H 0.186 0.814 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.168 0.832 38 H 0.071 0.929 39 H 0.043 0.957 40 H 0.044 0.956 41 H 0.039 0.961 42 H 0.074 0.926 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -24.445 -6.625 12.642 28.307 hybrid contribution 0.761 0.137 0.125 0.783 sum -23.685 -6.488 12.767 27.678 Atomic orbital electron populations 1.21815 0.91445 1.04333 1.03189 1.23399 0.97257 0.79480 1.03665 1.86397 1.16601 1.32869 1.85881 1.18833 0.84953 0.91289 0.91006 1.21649 0.93356 0.98575 1.08344 1.21540 0.94652 0.97815 0.87397 1.19718 0.95370 0.92236 1.02499 1.20364 0.88491 0.97192 0.92436 0.89908 1.22447 1.01361 1.03595 0.95797 1.60543 1.24418 1.05865 1.40712 1.21629 0.87786 0.98001 0.96620 1.19433 0.93477 0.95658 0.95637 1.21445 1.04104 1.03624 1.28023 0.95148 1.26055 0.94770 1.02969 0.95715 1.70081 1.14440 1.40002 1.34902 0.85575 0.78140 0.78624 0.79737 1.19672 1.21360 1.16165 1.20798 0.88548 1.02079 0.92932 1.20632 0.90600 0.82799 1.24905 1.43661 1.01719 1.02542 0.96905 1.94506 1.80187 1.10626 1.56001 1.94535 0.97500 1.92816 1.53356 0.92265 0.87536 0.91985 0.89736 0.89264 0.79791 0.81428 0.91044 0.90629 0.92511 0.83178 0.92929 0.95676 0.95637 0.96089 0.92555 0.82619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 71.98 0.74 -0.57 16 2 C 0.04 0.36 5.46 71.98 0.39 0.75 16 3 O -0.31 -6.04 8.15 -71.31 -0.58 -6.63 16 4 C 0.19 3.78 6.67 22.51 0.15 3.93 16 5 C -0.20 -2.68 9.04 22.36 0.20 -2.48 16 6 C 0.00 0.06 9.32 22.25 0.21 0.27 16 7 C -0.10 -1.83 4.96 -19.85 -0.10 -1.93 16 8 C 0.13 2.61 2.79 44.17 0.12 2.73 16 9 H 0.08 1.90 7.66 -2.39 -0.02 1.89 16 10 C -0.17 -2.99 9.14 71.98 0.66 -2.33 16 11 N -0.68 -17.48 5.70 -495.45 -2.83 -20.30 16 12 C 0.09 3.11 5.42 86.30 0.47 3.58 16 13 C 0.00 -0.18 4.30 29.85 0.13 -0.06 16 14 C -0.53 -29.85 9.66 25.60 0.25 -29.61 16 15 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 16 C 0.00 0.08 5.47 84.65 0.46 0.55 16 17 N -0.95 -59.23 13.96 21.45 0.30 -58.93 16 18 Si 0.96 42.88 27.47 68.60 1.88 44.77 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 20 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.24 -9.56 6.54 99.48 0.65 -8.91 16 22 C -0.02 -0.53 9.17 22.25 0.20 -0.32 16 23 C -0.10 -2.57 6.87 36.48 0.25 -2.32 16 24 N 0.04 1.24 4.45 -46.24 -0.21 1.03 16 25 O -0.21 -6.65 18.45 18.88 0.35 -6.30 16 26 O -0.17 -5.25 17.24 25.61 0.44 -4.81 16 27 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 0.58 7.66 -2.39 -0.02 0.57 16 31 H 0.09 0.51 7.66 -2.39 -0.02 0.49 16 32 H 0.18 1.11 6.30 -2.91 -0.02 1.09 16 33 H 0.17 1.72 7.24 -2.91 -0.02 1.70 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.05 8.13 -2.39 -0.02 1.04 16 36 H 0.06 1.13 7.45 -2.39 -0.02 1.11 16 37 H 0.35 7.51 7.81 -89.70 -0.70 6.81 16 38 H 0.05 1.99 8.06 -2.38 -0.02 1.97 16 39 H 0.03 0.89 7.44 -2.39 -0.02 0.87 16 40 H 0.03 1.05 7.20 -2.39 -0.02 1.03 16 41 H 0.02 0.91 7.57 -2.39 -0.02 0.90 16 42 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 43 H 0.16 3.30 7.59 -2.91 -0.02 3.28 16 Total: -1.00 -72.98 361.35 3.76 -69.22 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 0.27 Total: 9.75 kcal Atomic # 6 Polarization: -31.94 SS G_CDS: 4.14 Total: -27.80 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -2.73 Total: -78.20 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: 0.21 Total: -17.73 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.88 Total: 44.77 kcal Total: -72.98 3.76 -69.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273267345.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.932 kcal (2) G-P(sol) polarization free energy of solvation -72.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds