Wall clock time and date at job start Fri Apr 10 2020 22:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47168 * 2 1 4 4 C 1.35901 * 116.99866 * 179.97438 * 3 2 1 5 5 C 1.38751 * 120.05775 * 359.97438 * 4 3 2 6 6 C 1.38116 * 119.94540 * 179.75105 * 5 4 3 7 7 C 1.38296 * 120.05155 * 0.54106 * 6 5 4 8 8 C 1.50703 * 119.93979 * 179.73055 * 7 6 5 9 9 H 1.09007 * 109.46930 * 199.72369 * 8 7 6 10 10 C 1.53000 * 109.47484 * 79.72649 * 8 7 6 11 11 N 1.46900 * 109.47457 * 319.72194 * 8 7 6 12 12 C 1.46894 * 111.00559 * 205.00488 * 11 8 7 13 13 C 1.52997 * 109.47515 * 180.02562 * 12 11 8 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 20 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 21 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 22 C 1.38241 * 120.11321 * 359.45272 * 7 6 5 23 23 C 1.38163 * 120.05414 * 0.27430 * 22 7 6 24 24 N 1.48008 * 120.02714 * 179.97438 * 23 22 7 25 25 O 1.21803 * 119.99797 * 0.02562 * 24 23 22 26 26 O 1.21799 * 119.99835 * 179.97438 * 24 23 22 27 27 H 1.08997 * 109.47509 * 300.00882 * 1 2 3 28 28 H 1.09002 * 109.46601 * 60.00778 * 1 2 3 29 29 H 1.08996 * 109.47099 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47509 * 239.99118 * 2 1 3 31 31 H 1.09002 * 109.46601 * 119.99222 * 2 1 3 32 32 H 1.07997 * 120.02909 * 0.02562 * 5 4 3 33 33 H 1.08000 * 119.98027 * 180.26791 * 6 5 4 34 34 H 1.09002 * 109.47075 * 59.99868 * 10 8 7 35 35 H 1.09001 * 109.47164 * 179.97438 * 10 8 7 36 36 H 1.08998 * 109.46626 * 299.99909 * 10 8 7 37 37 H 1.00899 * 110.99900 * 81.04539 * 11 8 7 38 38 H 1.09002 * 109.47104 * 59.99767 * 12 11 8 39 39 H 1.08998 * 109.46828 * 300.00600 * 12 11 8 40 40 H 1.09002 * 109.47153 * 59.99762 * 13 12 11 41 41 H 1.09001 * 109.46832 * 299.99953 * 13 12 11 42 42 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 43 43 H 1.07999 * 119.96794 * 180.29646 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1999 0.4258 0.0016 6 6 5.5688 0.6094 -0.0031 7 6 6.0961 1.8878 0.0025 8 6 7.5902 2.0852 0.0036 9 1 7.8236 3.0904 0.3548 10 6 8.1298 1.9031 -1.4165 11 7 8.2140 1.0980 0.8948 12 6 9.5087 1.5817 1.3923 13 6 10.1265 0.5287 2.3144 14 6 11.4550 1.0247 2.8243 15 1 11.8218 1.9943 2.5214 16 6 12.2018 0.2412 3.6784 17 7 13.3609 0.6743 4.1238 18 14 11.5670 -1.4355 4.2028 19 1 12.0398 -2.4660 3.2437 20 1 12.0746 -1.7541 5.5615 21 1 10.0822 -1.4195 4.2202 22 6 5.2551 2.9850 0.0014 23 6 3.8850 2.8066 0.0003 24 7 2.9851 3.9817 -0.0003 25 8 3.4524 5.1065 -0.0004 26 8 1.7774 3.8238 -0.0017 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5137 0.8901 32 1 3.7886 -0.5728 0.0016 33 1 6.2281 -0.2461 -0.0066 34 1 7.6669 2.6357 -2.0777 35 1 9.2103 2.0463 -1.4157 36 1 7.8963 0.8980 -1.7677 37 1 8.3142 0.2065 0.4330 38 1 9.3616 2.5089 1.9463 39 1 10.1764 1.7637 0.5503 40 1 10.2736 -0.3983 1.7601 41 1 9.4588 0.3464 3.1564 42 1 13.8864 0.1229 4.7243 43 1 5.6694 3.9823 0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273267348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:05:11 Heat of formation + Delta-G solvation = -45.318266 kcal Electronic energy + Delta-G solvation = -24904.725103 eV Core-core repulsion = 21145.495891 eV Total energy + Delta-G solvation = -3759.229211 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.23015 -41.45122 -39.69933 -37.71541 -37.50170 -35.30336 -33.67005 -32.95755 -32.47396 -30.74624 -29.37738 -27.50262 -26.09178 -25.16527 -24.32321 -22.93256 -22.24545 -21.91755 -20.15902 -19.72247 -18.98071 -18.79216 -18.60708 -17.25395 -17.20274 -16.87254 -16.27261 -15.95138 -15.85162 -15.31691 -14.98046 -14.78116 -14.56458 -14.35747 -13.99903 -13.86264 -13.40037 -13.24631 -13.18468 -13.12790 -12.87429 -12.73705 -12.64007 -12.49658 -12.23271 -12.14669 -11.93443 -11.91563 -11.76755 -11.72303 -11.55319 -11.40636 -10.75501 -10.66007 -9.60516 -9.32193 -8.28394 -6.33164 -1.15752 -0.04930 0.32418 0.43031 1.37746 1.41375 1.53349 1.82438 2.22618 2.38154 3.07017 3.07723 3.37796 3.50806 3.64146 3.87850 3.91632 4.02945 4.06541 4.12028 4.27097 4.32685 4.41461 4.47300 4.52754 4.58581 4.71589 4.80881 4.86150 4.93347 4.96543 4.98627 5.10646 5.15472 5.23881 5.27559 5.36364 5.38533 5.51991 5.66460 6.01383 6.08400 6.26574 6.54024 6.56734 6.76614 7.31899 8.88379 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017852 B = 0.002812 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.085823 B = 9955.826027 C =10762.588211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.036 3.964 3 O -0.306 6.306 4 C 0.189 3.811 5 C -0.200 4.200 6 C 0.004 3.996 7 C -0.096 4.096 8 C 0.125 3.875 9 H 0.083 0.917 10 C -0.173 4.173 11 N -0.684 5.684 12 C 0.089 3.911 13 C -0.004 4.004 14 C -0.534 4.534 15 H 0.030 0.970 16 C 0.002 3.998 17 N -0.953 5.953 18 Si 0.956 3.044 19 H -0.264 1.264 20 H -0.289 1.289 21 H -0.244 1.244 22 C -0.024 4.024 23 C -0.104 4.104 24 N 0.041 4.959 25 O -0.208 6.208 26 O -0.165 6.165 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.185 0.815 33 H 0.168 0.832 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.349 0.651 38 H 0.052 0.948 39 H 0.025 0.975 40 H 0.024 0.976 41 H 0.022 0.978 42 H 0.266 0.734 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.494 -6.419 -13.269 28.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.038 4.038 3 O -0.217 6.217 4 C 0.139 3.861 5 C -0.219 4.219 6 C -0.014 4.014 7 C -0.098 4.098 8 C 0.015 3.985 9 H 0.101 0.899 10 C -0.232 4.232 11 N -0.316 5.316 12 C -0.040 4.040 13 C -0.042 4.042 14 C -0.572 4.572 15 H 0.049 0.951 16 C -0.195 4.195 17 N -0.594 5.594 18 Si 0.779 3.221 19 H -0.189 1.189 20 H -0.216 1.216 21 H -0.167 1.167 22 C -0.044 4.044 23 C -0.189 4.189 24 N 0.552 4.448 25 O -0.413 6.413 26 O -0.382 6.382 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.202 0.798 33 H 0.186 0.814 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.168 0.832 38 H 0.071 0.929 39 H 0.043 0.957 40 H 0.042 0.958 41 H 0.040 0.960 42 H 0.074 0.926 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -24.440 -6.612 -12.607 28.284 hybrid contribution 0.780 0.117 -0.167 0.806 sum -23.660 -6.494 -12.774 27.661 Atomic orbital electron populations 1.21814 0.91444 1.04333 1.03190 1.23400 0.97259 0.79478 1.03664 1.86398 1.16599 1.32869 1.85883 1.18831 0.84955 0.91288 0.91012 1.21648 0.93360 0.98578 1.08337 1.21544 0.94655 0.97810 0.87408 1.19719 0.95375 0.92240 1.02487 1.20365 0.88492 0.97193 0.92432 0.89919 1.22447 1.01356 1.03603 0.95793 1.60540 1.24503 1.05871 1.40641 1.21625 0.87791 0.98000 0.96607 1.19432 0.93581 0.95511 0.95674 1.21445 1.04097 1.03638 1.28034 0.95149 1.26056 0.94735 1.03012 0.95701 1.70079 1.14410 1.40009 1.34916 0.85577 0.80252 0.78811 0.77475 1.18874 1.21555 1.16711 1.20796 0.88551 1.02079 0.92944 1.20632 0.90599 0.82802 1.24900 1.43661 1.01719 1.02542 0.96904 1.94507 1.80181 1.10629 1.56003 1.94534 0.97503 1.92811 1.53350 0.92265 0.91983 0.87535 0.89259 0.89740 0.79791 0.81415 0.91048 0.92508 0.90612 0.83164 0.92932 0.95683 0.95795 0.95958 0.92553 0.82622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 71.98 0.74 -0.57 16 2 C 0.04 0.36 5.46 71.98 0.39 0.75 16 3 O -0.31 -6.05 8.15 -71.28 -0.58 -6.63 16 4 C 0.19 3.79 6.67 22.51 0.15 3.94 16 5 C -0.20 -2.69 9.04 22.36 0.20 -2.49 16 6 C 0.00 0.06 9.32 22.25 0.21 0.27 16 7 C -0.10 -1.83 4.96 -19.85 -0.10 -1.93 16 8 C 0.13 2.61 2.79 44.17 0.12 2.74 16 9 H 0.08 1.90 7.66 -2.38 -0.02 1.89 16 10 C -0.17 -2.98 9.14 71.98 0.66 -2.32 16 11 N -0.68 -17.51 5.71 -495.45 -2.83 -20.34 16 12 C 0.09 3.12 5.42 86.30 0.47 3.59 16 13 C 0.00 -0.18 4.30 29.85 0.13 -0.05 16 14 C -0.53 -29.88 9.66 25.60 0.25 -29.63 16 15 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 16 C 0.00 0.09 5.47 84.66 0.46 0.55 16 17 N -0.95 -59.21 13.96 21.45 0.30 -58.91 16 18 Si 0.96 42.86 27.47 68.60 1.88 44.74 16 19 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 20 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.24 -10.06 6.54 99.48 0.65 -9.41 16 22 C -0.02 -0.53 9.17 22.25 0.20 -0.33 16 23 C -0.10 -2.57 6.87 36.47 0.25 -2.32 16 24 N 0.04 1.24 4.45 -46.24 -0.21 1.03 16 25 O -0.21 -6.65 18.45 18.88 0.35 -6.30 16 26 O -0.17 -5.25 17.24 25.61 0.44 -4.80 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.09 0.51 7.66 -2.39 -0.02 0.49 16 31 H 0.08 0.59 7.66 -2.39 -0.02 0.57 16 32 H 0.18 1.12 6.30 -2.91 -0.02 1.10 16 33 H 0.17 1.72 7.25 -2.91 -0.02 1.70 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.13 7.45 -2.39 -0.02 1.11 16 36 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 37 H 0.35 7.49 7.82 -89.70 -0.70 6.79 16 38 H 0.05 1.99 8.06 -2.39 -0.02 1.97 16 39 H 0.02 0.88 7.44 -2.39 -0.02 0.87 16 40 H 0.02 0.97 7.57 -2.39 -0.02 0.96 16 41 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 42 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 43 H 0.16 3.30 7.59 -2.91 -0.02 3.28 16 Total: -1.00 -73.06 361.36 3.76 -69.30 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.27 Total: 9.73 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: 4.14 Total: -27.82 kcal Atomic # 7 Polarization: -75.48 SS G_CDS: -2.74 Total: -78.22 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: 0.21 Total: -17.73 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.88 Total: 44.74 kcal Total: -73.06 3.76 -69.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273267348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.985 kcal (2) G-P(sol) polarization free energy of solvation -73.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds