Wall clock time and date at job start Fri Apr 10 2020 22:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.47003 * 2 1 4 4 C 1.35906 * 116.99913 * 179.97438 * 3 2 1 5 5 C 1.38752 * 120.05275 * 0.02562 * 4 3 2 6 6 C 1.38125 * 119.94288 * 179.97438 * 5 4 3 7 7 C 1.50695 * 119.97670 * 180.02562 * 6 5 4 8 8 N 1.46897 * 109.47426 * 84.40281 * 7 6 5 9 9 C 1.46893 * 111.00453 * 199.77379 * 8 7 6 10 10 C 1.52992 * 109.47238 * 75.75702 * 9 8 7 11 11 C 1.46909 * 110.99790 * 75.81744 * 8 7 6 12 12 C 1.50691 * 109.47086 * 190.00518 * 11 8 7 13 13 H 1.08000 * 120.00285 * 359.97438 * 12 11 8 14 14 C 1.37879 * 119.99872 * 180.02562 * 12 11 8 15 15 N 1.31512 * 120.00217 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00111 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47401 * 89.99567 * 16 14 12 18 18 H 1.48494 * 109.47272 * 209.99490 * 16 14 12 19 19 H 1.48504 * 109.47118 * 329.99457 * 16 14 12 20 20 C 1.38296 * 120.05228 * 359.72970 * 6 5 4 21 21 C 1.38242 * 120.10940 * 0.55264 * 20 6 5 22 22 C 1.38158 * 120.05889 * 359.44037 * 21 20 6 23 23 N 1.48002 * 120.03047 * 180.25621 * 22 21 20 24 24 O 1.21802 * 120.00062 * 0.02562 * 23 22 21 25 25 O 1.21801 * 120.00267 * 180.02562 * 23 22 21 26 26 H 1.08997 * 109.47041 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47118 * 300.00030 * 1 2 3 28 28 H 1.08997 * 109.46830 * 59.99852 * 1 2 3 29 29 H 1.09000 * 109.47533 * 239.99774 * 2 1 3 30 30 H 1.09002 * 109.47247 * 120.00347 * 2 1 3 31 31 H 1.07996 * 120.03103 * 359.96198 * 5 4 3 32 32 H 1.08995 * 109.47696 * 204.40856 * 7 6 5 33 33 H 1.09001 * 109.47107 * 324.40515 * 7 6 5 34 34 H 1.09000 * 109.47172 * 195.75557 * 9 8 7 35 35 H 1.09000 * 109.47277 * 315.75815 * 9 8 7 36 36 H 1.09002 * 109.47418 * 54.85964 * 10 9 8 37 37 H 1.08995 * 109.47664 * 174.85895 * 10 9 8 38 38 H 1.09003 * 109.47335 * 294.86088 * 10 9 8 39 39 H 1.09003 * 109.46656 * 310.00668 * 11 8 7 40 40 H 1.08995 * 109.47028 * 70.00050 * 11 8 7 41 41 H 0.96997 * 120.00567 * 180.02562 * 15 14 12 42 42 H 1.07998 * 119.94162 * 180.29171 * 20 6 5 43 43 H 1.08007 * 119.96726 * 179.72335 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1999 0.4258 0.0005 6 6 5.5689 0.6094 0.0005 7 6 6.4887 -0.5843 -0.0001 8 7 6.6805 -1.0540 -1.3786 9 6 7.1594 -2.4425 -1.3999 10 6 5.9989 -3.3872 -1.0813 11 6 7.5955 -0.1702 -2.1134 12 6 7.5780 -0.5331 -3.5759 13 1 6.9504 -1.3398 -3.9247 14 6 8.3642 0.1642 -4.4686 15 7 9.1289 1.1462 -4.0438 16 14 8.3431 -0.2860 -6.2814 17 1 7.2918 0.5009 -6.9747 18 1 9.6664 0.0184 -6.8824 19 1 8.0543 -1.7353 -6.4282 20 6 6.0962 1.8879 -0.0051 21 6 5.2551 2.9850 0.0008 22 6 3.8851 2.8067 0.0007 23 7 2.9852 3.9817 0.0012 24 8 3.4524 5.1065 0.0014 25 8 1.7775 3.8239 0.0016 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 3.7886 -0.5728 0.0007 32 1 7.4517 -0.3012 0.4247 33 1 6.0485 -1.3824 0.5977 34 1 7.5562 -2.6749 -2.3882 35 1 7.9447 -2.5675 -0.6545 36 1 5.1766 -3.1984 -1.7715 37 1 6.3315 -4.4198 -1.1864 38 1 5.6615 -3.2165 -0.0589 39 1 7.2764 0.8650 -1.9920 40 1 8.6060 -0.2871 -1.7220 41 1 9.6816 1.6370 -4.6718 42 1 7.1668 2.0294 -0.0098 43 1 5.6694 3.9824 0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276859108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:05:14 Heat of formation + Delta-G solvation = -19.059164 kcal Electronic energy + Delta-G solvation = -25883.014294 eV Core-core repulsion = 22124.923763 eV Total energy + Delta-G solvation = -3758.090531 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.89682 -40.29475 -38.36159 -36.76073 -36.13752 -32.98096 -32.56896 -31.79631 -30.29343 -29.76744 -28.07819 -26.04069 -24.51504 -23.92667 -22.58705 -21.95315 -21.61442 -20.05646 -19.24109 -18.36507 -17.64429 -17.27218 -16.51545 -16.26362 -16.08979 -15.25581 -14.73476 -14.65470 -14.54885 -14.05942 -13.86677 -13.58727 -13.38979 -12.80275 -12.71221 -12.22701 -12.17403 -12.09542 -11.91986 -11.63737 -11.42481 -11.27345 -11.21918 -11.09898 -10.93418 -10.79721 -10.79189 -10.73501 -10.60833 -10.32338 -9.97410 -9.39779 -9.20827 -8.58214 -8.50654 -7.52197 -6.14056 -4.15501 0.14842 1.15187 1.61575 1.72468 2.80558 3.25302 3.32162 3.33820 3.40061 4.33407 4.41665 4.47039 4.71284 4.73365 4.83384 4.94221 5.01763 5.02779 5.16807 5.22609 5.38361 5.40709 5.53573 5.54602 5.61417 5.73318 5.77281 5.83954 5.89383 5.92220 5.98595 6.16342 6.39196 6.41927 6.52106 6.60908 6.62398 7.03596 7.09279 7.15449 7.64824 7.89404 8.00628 8.01004 8.35781 8.91115 9.49219 10.96771 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.011851 B = 0.004364 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.197993 B = 6413.940294 C = 7340.653789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.285 6.285 4 C 0.194 3.806 5 C -0.194 4.194 6 C 0.037 3.963 7 C 0.077 3.923 8 N -0.530 5.530 9 C 0.055 3.945 10 C -0.145 4.145 11 C 0.188 3.812 12 C -0.511 4.511 13 H 0.063 0.937 14 C 0.058 3.942 15 N -0.896 5.896 16 Si 0.896 3.104 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.139 4.139 21 C -0.021 4.021 22 C -0.090 4.090 23 N 0.043 4.957 24 O -0.191 6.191 25 O -0.150 6.150 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.148 0.852 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.021 0.979 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.042 0.958 39 H 0.036 0.964 40 H -0.007 1.007 41 H 0.262 0.738 42 H 0.148 0.852 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.187 -4.756 11.305 15.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 O -0.197 6.197 4 C 0.145 3.855 5 C -0.214 4.214 6 C 0.036 3.964 7 C -0.051 4.051 8 N -0.255 5.255 9 C -0.073 4.073 10 C -0.202 4.202 11 C 0.063 3.937 12 C -0.549 4.549 13 H 0.081 0.919 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.724 3.276 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.159 4.159 21 C -0.040 4.040 22 C -0.175 4.175 23 N 0.558 4.442 24 O -0.398 6.398 25 O -0.369 6.369 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.166 0.834 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.040 0.960 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.010 0.990 41 H 0.072 0.928 42 H 0.165 0.835 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -10.218 -5.008 10.995 15.823 hybrid contribution 0.792 -0.019 -0.747 1.089 sum -9.425 -5.028 10.249 14.804 Atomic orbital electron populations 1.21752 0.92134 1.02799 1.03983 1.22998 0.96498 0.81247 1.02039 1.86368 1.16853 1.29980 1.86469 1.18548 0.84067 0.91351 0.91512 1.21082 0.93267 0.97694 1.09377 1.20140 0.93415 0.95420 0.87465 1.21191 0.96589 0.93750 0.93528 1.62189 1.51453 1.02743 1.09130 1.22005 0.94879 0.88220 1.02170 1.21814 0.99646 0.98196 1.00589 1.19862 0.88510 0.92134 0.93169 1.21097 1.24569 1.17581 0.91693 0.91864 1.24961 0.95309 0.95026 0.99078 1.69929 1.27089 1.21510 1.34996 0.86522 0.77338 0.78827 0.84896 1.20600 1.21222 1.19836 1.21117 1.00968 0.90613 1.03159 1.20860 0.88998 1.01760 0.92377 1.20427 0.90570 0.82884 1.23632 1.43332 1.01542 1.02024 0.97257 1.94503 1.80253 1.09702 1.55379 1.94542 0.96835 1.92690 1.52811 0.90262 0.91334 0.91148 0.91103 0.91625 0.83425 0.93524 0.90305 0.89143 0.96029 0.92118 0.93138 0.93940 0.94635 0.98955 0.92795 0.83455 0.82665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.16 0.38 -0.83 16 2 C 0.05 0.47 5.46 37.16 0.20 0.67 16 3 O -0.29 -4.06 8.15 -41.57 -0.34 -4.40 16 4 C 0.19 2.94 6.67 -39.22 -0.26 2.68 16 5 C -0.19 -2.70 8.71 -39.43 -0.34 -3.04 16 6 C 0.04 0.55 5.04 -104.64 -0.53 0.02 16 7 C 0.08 1.16 4.94 -4.98 -0.02 1.14 16 8 N -0.53 -9.95 4.34 -237.53 -1.03 -10.98 16 9 C 0.06 0.93 5.51 -3.83 -0.02 0.91 16 10 C -0.14 -1.92 9.96 37.15 0.37 -1.55 16 11 C 0.19 4.44 4.54 -4.98 -0.02 4.42 16 12 C -0.51 -13.52 8.23 -34.44 -0.28 -13.80 16 13 H 0.06 1.67 7.31 -52.49 -0.38 1.28 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -25.51 13.29 55.43 0.74 -24.77 16 16 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 C -0.14 -2.10 8.39 -39.56 -0.33 -2.43 16 21 C -0.02 -0.32 9.55 -39.61 -0.38 -0.69 16 22 C -0.09 -1.47 6.86 -79.81 -0.55 -2.02 16 23 N 0.04 0.77 4.45 34.03 0.15 0.92 16 24 O -0.19 -3.44 18.45 -29.46 -0.54 -3.99 16 25 O -0.15 -2.74 17.24 -36.49 -0.63 -3.37 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.69 7.66 -51.93 -0.40 0.29 16 30 H 0.07 0.54 7.66 -51.93 -0.40 0.14 16 31 H 0.15 1.71 6.30 -52.49 -0.33 1.38 16 32 H 0.05 0.70 7.90 -51.93 -0.41 0.28 16 33 H 0.08 0.99 6.54 -51.93 -0.34 0.65 16 34 H 0.09 1.75 6.58 -51.93 -0.34 1.41 16 35 H 0.02 0.35 8.00 -51.93 -0.42 -0.07 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.04 0.49 6.89 -51.93 -0.36 0.13 16 39 H 0.04 0.89 6.30 -51.93 -0.33 0.56 16 40 H -0.01 -0.19 8.12 -51.93 -0.42 -0.61 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.15 2.13 7.97 -52.49 -0.42 1.71 16 43 H 0.16 2.10 7.61 -52.48 -0.40 1.70 16 LS Contribution 360.27 15.07 5.43 5.43 Total: -1.00 -30.58 360.27 -9.32 -39.90 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -6.19 Total: -1.73 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -1.88 Total: -13.04 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: -0.14 Total: -34.83 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -1.51 Total: -11.76 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.58 -9.32 -39.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276859108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.843 kcal (2) G-P(sol) polarization free energy of solvation -30.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds