Wall clock time and date at job start Fri Apr 10 2020 22:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.47003 * 2 1 4 4 C 1.35906 * 116.99913 * 179.97438 * 3 2 1 5 5 C 1.38752 * 120.05275 * 0.02562 * 4 3 2 6 6 C 1.38125 * 119.94288 * 179.97438 * 5 4 3 7 7 C 1.50695 * 119.97670 * 180.02562 * 6 5 4 8 8 N 1.46897 * 109.47426 * 84.40281 * 7 6 5 9 9 C 1.46893 * 111.00453 * 199.77379 * 8 7 6 10 10 C 1.52992 * 109.47238 * 75.75702 * 9 8 7 11 11 C 1.46909 * 110.99790 * 75.81744 * 8 7 6 12 12 C 1.50691 * 109.47086 * 190.00518 * 11 8 7 13 13 H 1.08000 * 120.00285 * 359.97438 * 12 11 8 14 14 C 1.37879 * 119.99872 * 180.02562 * 12 11 8 15 15 N 1.31512 * 120.00217 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00111 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47401 * 89.99567 * 16 14 12 18 18 H 1.48494 * 109.47272 * 209.99490 * 16 14 12 19 19 H 1.48504 * 109.47118 * 329.99457 * 16 14 12 20 20 C 1.38296 * 120.05228 * 359.72970 * 6 5 4 21 21 C 1.38242 * 120.10940 * 0.55264 * 20 6 5 22 22 C 1.38158 * 120.05889 * 359.44037 * 21 20 6 23 23 N 1.48002 * 120.03047 * 180.25621 * 22 21 20 24 24 O 1.21802 * 120.00062 * 0.02562 * 23 22 21 25 25 O 1.21801 * 120.00267 * 180.02562 * 23 22 21 26 26 H 1.08997 * 109.47041 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47118 * 300.00030 * 1 2 3 28 28 H 1.08997 * 109.46830 * 59.99852 * 1 2 3 29 29 H 1.09000 * 109.47533 * 239.99774 * 2 1 3 30 30 H 1.09002 * 109.47247 * 120.00347 * 2 1 3 31 31 H 1.07996 * 120.03103 * 359.96198 * 5 4 3 32 32 H 1.08995 * 109.47696 * 204.40856 * 7 6 5 33 33 H 1.09001 * 109.47107 * 324.40515 * 7 6 5 34 34 H 1.09000 * 109.47172 * 195.75557 * 9 8 7 35 35 H 1.09000 * 109.47277 * 315.75815 * 9 8 7 36 36 H 1.09002 * 109.47418 * 54.85964 * 10 9 8 37 37 H 1.08995 * 109.47664 * 174.85895 * 10 9 8 38 38 H 1.09003 * 109.47335 * 294.86088 * 10 9 8 39 39 H 1.09003 * 109.46656 * 310.00668 * 11 8 7 40 40 H 1.08995 * 109.47028 * 70.00050 * 11 8 7 41 41 H 0.96997 * 120.00567 * 180.02562 * 15 14 12 42 42 H 1.07998 * 119.94162 * 180.29171 * 20 6 5 43 43 H 1.08007 * 119.96726 * 179.72335 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 4.1999 0.4258 0.0005 6 6 5.5689 0.6094 0.0005 7 6 6.4887 -0.5843 -0.0001 8 7 6.6805 -1.0540 -1.3786 9 6 7.1594 -2.4425 -1.3999 10 6 5.9989 -3.3872 -1.0813 11 6 7.5955 -0.1702 -2.1134 12 6 7.5780 -0.5331 -3.5759 13 1 6.9504 -1.3398 -3.9247 14 6 8.3642 0.1642 -4.4686 15 7 9.1289 1.1462 -4.0438 16 14 8.3431 -0.2860 -6.2814 17 1 7.2918 0.5009 -6.9747 18 1 9.6664 0.0184 -6.8824 19 1 8.0543 -1.7353 -6.4282 20 6 6.0962 1.8879 -0.0051 21 6 5.2551 2.9850 0.0008 22 6 3.8851 2.8067 0.0007 23 7 2.9852 3.9817 0.0012 24 8 3.4524 5.1065 0.0014 25 8 1.7775 3.8239 0.0016 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 3.7886 -0.5728 0.0007 32 1 7.4517 -0.3012 0.4247 33 1 6.0485 -1.3824 0.5977 34 1 7.5562 -2.6749 -2.3882 35 1 7.9447 -2.5675 -0.6545 36 1 5.1766 -3.1984 -1.7715 37 1 6.3315 -4.4198 -1.1864 38 1 5.6615 -3.2165 -0.0589 39 1 7.2764 0.8650 -1.9920 40 1 8.6060 -0.2871 -1.7220 41 1 9.6816 1.6370 -4.6718 42 1 7.1668 2.0294 -0.0098 43 1 5.6694 3.9824 0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276859108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:05:13 Heat of formation + Delta-G solvation = -35.468456 kcal Electronic energy + Delta-G solvation = -25883.725854 eV Core-core repulsion = 22124.923763 eV Total energy + Delta-G solvation = -3758.802091 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.22559 -41.44421 -39.53911 -38.12010 -37.51208 -34.83624 -33.83671 -32.70470 -31.57194 -30.93439 -29.64046 -27.59648 -25.67611 -25.15363 -24.15465 -23.03379 -22.77924 -21.46758 -20.50106 -19.73105 -18.82174 -18.61611 -18.38625 -17.32112 -17.19355 -16.74801 -16.24729 -16.07285 -15.68185 -15.48489 -15.07217 -14.65440 -14.47144 -14.23661 -13.94648 -13.46879 -13.34271 -13.19104 -13.13549 -12.85981 -12.73803 -12.63136 -12.60251 -12.50517 -12.41022 -12.33465 -12.22148 -11.99627 -11.77204 -11.76905 -11.55299 -11.25771 -10.60739 -10.46684 -9.67775 -9.05206 -8.21026 -6.28454 -1.15033 0.00993 0.31063 0.43966 1.38931 1.40468 1.49889 1.82761 2.20314 2.39364 3.13222 3.28744 3.30706 3.45040 3.76784 3.79564 4.00535 4.04188 4.06124 4.24172 4.33724 4.36291 4.40511 4.55905 4.61178 4.66882 4.78953 4.80279 4.82792 4.95632 5.06607 5.13232 5.19215 5.23038 5.25202 5.26700 5.38576 5.39802 5.51257 5.66038 6.01618 6.07047 6.32788 6.60176 6.61223 6.87552 7.40535 8.89433 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.011851 B = 0.004364 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.197993 B = 6413.940294 C = 7340.653789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.035 3.965 3 O -0.302 6.302 4 C 0.195 3.805 5 C -0.184 4.184 6 C 0.031 3.969 7 C 0.079 3.921 8 N -0.535 5.535 9 C 0.052 3.948 10 C -0.134 4.134 11 C 0.203 3.797 12 C -0.520 4.520 13 H 0.061 0.939 14 C 0.006 3.994 15 N -0.930 5.930 16 Si 0.957 3.043 17 H -0.280 1.280 18 H -0.284 1.284 19 H -0.263 1.263 20 C -0.148 4.148 21 C -0.023 4.023 22 C -0.110 4.110 23 N 0.044 4.956 24 O -0.206 6.206 25 O -0.163 6.163 26 H 0.107 0.893 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.177 0.823 32 H 0.047 0.953 33 H 0.115 0.885 34 H 0.058 0.942 35 H 0.029 0.971 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.018 0.982 40 H -0.035 1.035 41 H 0.262 0.738 42 H 0.147 0.853 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.325 -7.170 11.806 17.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.039 4.039 3 O -0.213 6.213 4 C 0.146 3.854 5 C -0.204 4.204 6 C 0.030 3.970 7 C -0.048 4.048 8 N -0.259 5.259 9 C -0.075 4.075 10 C -0.191 4.191 11 C 0.076 3.924 12 C -0.558 4.558 13 H 0.079 0.921 14 C -0.192 4.192 15 N -0.571 5.571 16 Si 0.782 3.218 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.187 1.187 20 C -0.167 4.167 21 C -0.042 4.042 22 C -0.196 4.196 23 N 0.555 4.445 24 O -0.412 6.412 25 O -0.380 6.380 26 H 0.126 0.874 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.195 0.805 32 H 0.065 0.935 33 H 0.133 0.867 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.036 0.964 40 H -0.017 1.017 41 H 0.071 0.929 42 H 0.165 0.835 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -11.386 -7.432 11.508 17.813 hybrid contribution 1.116 0.652 -0.847 1.545 sum -10.271 -6.780 10.661 16.282 Atomic orbital electron populations 1.21801 0.90886 1.04416 1.03309 1.23401 0.97560 0.79535 1.03413 1.86380 1.16199 1.32785 1.85950 1.18679 0.84892 0.91062 0.90805 1.21313 0.92482 0.98553 1.08035 1.20253 0.94052 0.95203 0.87533 1.21290 0.97017 0.94852 0.91690 1.62080 1.49678 1.02912 1.11257 1.22054 0.96885 0.87844 1.00759 1.21722 0.97605 0.97992 1.01798 1.19488 0.88023 0.92248 0.92598 1.21458 1.23943 1.17072 0.93351 0.92092 1.25761 0.95172 0.95067 1.03227 1.70042 1.28074 1.22674 1.36285 0.85568 0.77218 0.78981 0.80001 1.20595 1.20959 1.18694 1.21202 1.00998 0.91019 1.03487 1.20961 0.88706 1.02327 0.92215 1.20674 0.90769 0.82868 1.25240 1.43552 1.01653 1.02393 0.96888 1.94484 1.80233 1.10434 1.56005 1.94519 0.97382 1.92796 1.53330 0.87440 0.91563 0.92296 0.90558 0.89235 0.80538 0.93500 0.86656 0.92334 0.95241 0.92810 0.91321 0.91420 0.96440 1.01703 0.92868 0.83544 0.81878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 10.28 71.98 0.74 -1.30 16 2 C 0.03 0.60 5.46 71.98 0.39 0.99 16 3 O -0.30 -8.13 8.15 -71.34 -0.58 -8.71 16 4 C 0.20 5.65 6.67 22.51 0.15 5.80 16 5 C -0.18 -4.65 8.71 22.37 0.19 -4.45 16 6 C 0.03 0.87 5.04 -19.88 -0.10 0.77 16 7 C 0.08 2.18 4.94 85.56 0.42 2.61 16 8 N -0.53 -19.33 4.34 -905.42 -3.93 -23.26 16 9 C 0.05 1.67 5.51 86.30 0.48 2.15 16 10 C -0.13 -3.05 9.96 71.98 0.72 -2.33 16 11 C 0.20 9.69 4.54 85.55 0.39 10.07 16 12 C -0.52 -27.69 8.23 25.60 0.21 -27.48 16 13 H 0.06 3.20 7.31 -2.91 -0.02 3.18 16 14 C 0.01 0.33 5.46 84.66 0.46 0.80 16 15 N -0.93 -53.90 13.29 21.45 0.28 -53.61 16 16 Si 0.96 43.22 29.54 68.60 2.03 45.24 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 20 C -0.15 -4.42 8.39 22.28 0.19 -4.23 16 21 C -0.02 -0.70 9.55 22.25 0.21 -0.49 16 22 C -0.11 -3.59 6.86 36.47 0.25 -3.34 16 23 N 0.04 1.58 4.45 -46.25 -0.21 1.37 16 24 O -0.21 -7.60 18.45 18.88 0.35 -7.25 16 25 O -0.16 -6.01 17.24 25.61 0.44 -5.57 16 26 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 1.24 7.66 -2.39 -0.02 1.23 16 30 H 0.09 1.13 7.66 -2.39 -0.02 1.11 16 31 H 0.18 3.33 6.30 -2.91 -0.02 3.31 16 32 H 0.05 1.32 7.90 -2.39 -0.02 1.31 16 33 H 0.12 2.36 6.54 -2.39 -0.02 2.35 16 34 H 0.06 2.24 6.58 -2.39 -0.02 2.22 16 35 H 0.03 0.89 8.00 -2.39 -0.02 0.87 16 36 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.21 6.89 -2.39 -0.02 1.20 16 39 H 0.02 0.90 6.30 -2.39 -0.02 0.88 16 40 H -0.03 -1.82 8.12 -2.39 -0.02 -1.84 16 41 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 42 H 0.15 4.33 7.97 -2.91 -0.02 4.31 16 43 H 0.16 4.52 7.61 -2.91 -0.02 4.50 16 Total: -1.00 -67.02 360.27 4.10 -62.92 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 1.01 Total: 9.31 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: 4.70 Total: -20.43 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -3.85 Total: -75.50 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: 0.21 Total: -21.54 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -67.02 4.10 -62.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276859108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.451 kcal (2) G-P(sol) polarization free energy of solvation -67.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds