Wall clock time and date at job start Fri Apr 10 2020 22:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47110 * 2 1 4 4 O 1.42905 * 109.47290 * 120.00184 * 2 1 3 5 5 C 1.53006 * 109.47212 * 239.99803 * 2 1 3 6 6 C 1.52995 * 109.46875 * 175.00177 * 5 2 1 7 7 C 1.53008 * 109.46929 * 180.02562 * 6 5 2 8 8 N 1.46497 * 109.46990 * 180.02562 * 7 6 5 9 9 C 1.34784 * 119.99660 * 180.02562 * 8 7 6 10 10 O 1.21589 * 120.00109 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99796 * 180.02562 * 9 8 7 12 12 C 1.39939 * 119.99758 * 174.73723 * 11 9 8 13 13 C 1.38956 * 120.03570 * 326.32472 * 12 11 9 14 14 C 1.38156 * 120.07081 * 180.02562 * 13 12 11 15 15 C 1.38175 * 120.13567 * 359.72119 * 14 13 12 16 16 C 1.38905 * 120.06692 * 0.55652 * 15 14 13 17 17 O 1.35755 * 120.03289 * 179.72231 * 16 15 14 18 18 C 1.34825 * 117.00011 * 173.82163 * 17 16 15 19 19 H 1.07996 * 119.99945 * 354.59785 * 18 17 16 20 20 C 1.38654 * 119.99933 * 174.60004 * 18 17 16 21 21 N 1.31562 * 119.99967 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99998 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47088 * 89.99781 * 22 20 18 24 24 H 1.48497 * 109.46655 * 209.99962 * 22 20 18 25 25 H 1.48498 * 109.46856 * 329.99802 * 22 20 18 26 26 C 1.38708 * 120.03895 * 146.35779 * 12 11 9 27 27 H 1.09005 * 109.47046 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47345 * 299.99519 * 1 2 3 29 29 H 1.08997 * 109.47140 * 60.00326 * 1 2 3 30 30 H 0.96703 * 113.99919 * 59.99338 * 4 2 1 31 31 H 1.09001 * 109.46603 * 55.00153 * 5 2 1 32 32 H 1.09001 * 109.47070 * 295.00018 * 5 2 1 33 33 H 1.08993 * 109.47791 * 60.00352 * 6 5 2 34 34 H 1.09001 * 109.47141 * 299.99797 * 6 5 2 35 35 H 1.09001 * 109.46888 * 59.99768 * 7 6 5 36 36 H 1.09001 * 109.46731 * 299.99666 * 7 6 5 37 37 H 0.96996 * 120.00079 * 359.97438 * 8 7 6 38 38 H 0.96996 * 119.99805 * 354.72075 * 11 9 8 39 39 H 1.08002 * 119.96782 * 0.02562 * 13 12 11 40 40 H 1.07998 * 119.93391 * 180.02562 * 14 13 12 41 41 H 1.08000 * 119.96247 * 180.28112 * 15 14 13 42 42 H 0.97000 * 120.00104 * 180.02562 * 21 20 18 43 43 H 1.08003 * 120.06084 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2493 6 6 3.5648 -0.6133 -1.3136 7 6 4.0748 -1.3341 -2.5632 8 7 5.5349 -1.2313 -2.6245 9 6 6.2078 -1.7957 -3.6469 10 8 5.6031 -2.3907 -4.5180 11 7 7.5511 -1.7016 -3.7030 12 6 8.2588 -2.3793 -4.7021 13 6 7.8047 -3.6086 -5.1641 14 6 8.5031 -4.2786 -6.1500 15 6 9.6517 -3.7262 -6.6838 16 6 10.1140 -2.5004 -6.2221 17 8 11.2456 -1.9611 -6.7431 18 6 11.5691 -0.7143 -6.3446 19 1 10.8947 -0.1580 -5.7105 20 6 12.7676 -0.1464 -6.7490 21 7 13.5894 -0.8242 -7.5210 22 14 13.2155 1.5813 -6.1975 23 1 13.9657 1.5135 -4.9177 24 1 14.0608 2.2279 -7.2332 25 1 11.9760 2.3758 -6.0033 26 6 9.4148 -1.8251 -5.2318 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.7209 -1.5953 1.2329 31 1 1.6053 -0.2618 -2.1370 32 1 1.7516 -1.7716 -1.2056 33 1 3.9994 -1.0728 -0.4260 34 1 3.8531 0.4369 -1.3573 35 1 3.6401 -0.8742 -3.4507 36 1 3.7864 -2.3844 -2.5199 37 1 6.0172 -0.7564 -1.9298 38 1 8.0272 -1.1639 -3.0511 39 1 6.9048 -4.0408 -4.7520 40 1 8.1479 -5.2337 -6.5077 41 1 10.1930 -4.2503 -7.4576 42 1 14.4280 -0.4270 -7.8036 43 1 9.7698 -0.8698 -4.8742 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279193658.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:05:22 Heat of formation + Delta-G solvation = -93.489312 kcal Electronic energy + Delta-G solvation = -24074.447332 eV Core-core repulsion = 20313.129267 eV Total energy + Delta-G solvation = -3761.318064 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.34008 -38.82067 -38.44962 -36.68270 -35.48451 -34.18152 -33.05654 -32.20321 -30.80394 -29.25005 -28.43532 -26.29563 -25.25178 -22.77662 -21.82945 -21.82079 -21.73312 -20.33503 -18.53490 -17.83797 -17.33413 -16.89506 -16.59009 -15.90506 -15.67128 -15.05834 -14.93436 -14.70583 -14.61269 -14.15007 -14.00975 -13.89154 -13.55494 -13.49565 -12.95344 -12.81276 -12.43105 -12.29580 -12.03533 -11.99097 -11.71914 -11.56268 -11.23262 -11.18862 -11.10923 -10.99642 -10.72301 -10.45709 -10.42358 -10.03153 -9.60482 -9.45734 -9.16193 -8.78159 -7.67155 -7.10433 -6.42936 -4.02449 2.09641 2.43289 2.70286 3.12332 3.13138 3.18109 3.34474 3.86748 3.97314 4.15891 4.27692 4.47437 4.54083 4.64110 4.75637 4.91496 4.97225 5.12754 5.14400 5.23597 5.31169 5.34447 5.46338 5.55743 5.62949 5.72106 5.82656 5.85462 6.04255 6.12257 6.27290 6.29592 6.38176 6.59060 6.83157 7.04204 7.14011 7.17970 7.31084 7.36960 7.46150 7.86283 8.01359 8.05389 8.65992 9.02559 9.73754 10.75211 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018621 B = 0.002316 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.353276 B =12087.515656 C =13337.240480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.101 3.899 3 H 0.098 0.902 4 O -0.564 6.564 5 C -0.149 4.149 6 C -0.128 4.128 7 C 0.139 3.861 8 N -0.748 5.748 9 C 0.702 3.298 10 O -0.571 6.571 11 N -0.682 5.682 12 C 0.199 3.801 13 C -0.205 4.205 14 C -0.063 4.063 15 C -0.202 4.202 16 C 0.169 3.831 17 O -0.177 6.177 18 C -0.391 4.391 19 H 0.090 0.910 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.940 3.060 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.269 1.269 26 C -0.258 4.258 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.375 0.625 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.396 0.604 38 H 0.402 0.598 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.269 0.731 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.244 1.421 15.342 26.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.042 3.958 3 H 0.116 0.884 4 O -0.369 6.369 5 C -0.187 4.187 6 C -0.166 4.166 7 C 0.014 3.986 8 N -0.405 5.405 9 C 0.402 3.598 10 O -0.448 6.448 11 N -0.329 5.329 12 C 0.105 3.895 13 C -0.226 4.226 14 C -0.082 4.082 15 C -0.222 4.222 16 C 0.115 3.885 17 O -0.081 6.081 18 C -0.467 4.467 19 H 0.107 0.893 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.193 1.193 26 C -0.280 4.280 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.222 0.778 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.230 0.770 38 H 0.237 0.763 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.079 0.921 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.189 1.419 14.396 25.656 hybrid contribution 0.365 0.982 0.802 1.319 sum -20.825 2.401 15.197 25.892 Atomic orbital electron populations 1.22512 0.96413 1.02649 1.02861 1.21937 0.92771 0.96805 0.84300 0.88361 1.86599 1.77178 1.29144 1.44027 1.22234 0.95595 1.01759 0.99111 1.21741 0.95701 1.01309 0.97871 1.21196 0.78488 1.00848 0.98026 1.45115 1.07741 1.60712 1.26895 1.15914 0.81549 0.80008 0.82288 1.90947 1.67527 1.46996 1.39285 1.42593 1.05051 1.52442 1.32834 1.17180 0.91737 0.90879 0.89695 1.20561 1.03002 0.95192 1.03824 1.20526 0.93806 0.98422 0.95443 1.20237 0.99706 0.96611 1.05656 1.19065 0.87246 0.91843 0.90372 1.84019 1.34133 1.30496 1.59410 1.21258 1.04524 0.88063 1.32859 0.89307 1.25272 0.94822 0.99981 0.96470 1.70038 1.10126 1.37374 1.32237 0.85733 0.78894 0.80441 0.78466 1.19938 1.20267 1.19310 1.20781 0.99889 1.03426 1.03894 0.92245 0.91809 0.91439 0.77826 0.90521 0.91143 0.90549 0.91238 0.91689 0.91692 0.77041 0.76319 0.86276 0.86653 0.86411 0.92064 0.85319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.79 9.53 37.15 0.35 -0.44 16 2 C 0.10 0.53 3.59 -26.73 -0.10 0.43 16 3 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 4 O -0.56 -3.64 12.88 -35.23 -0.45 -4.10 16 5 C -0.15 -0.75 4.89 -26.73 -0.13 -0.88 16 6 C -0.13 -0.80 5.23 -26.73 -0.14 -0.94 16 7 C 0.14 1.27 5.67 -4.04 -0.02 1.25 16 8 N -0.75 -8.00 5.56 -65.22 -0.36 -8.36 16 9 C 0.70 10.91 8.30 -86.91 -0.72 10.19 16 10 O -0.57 -11.15 14.05 5.29 0.07 -11.08 16 11 N -0.68 -10.64 5.35 -14.24 -0.08 -10.71 16 12 C 0.20 3.92 6.27 -83.72 -0.52 3.39 16 13 C -0.20 -4.06 8.65 -39.35 -0.34 -4.40 16 14 C -0.06 -1.22 10.03 -39.63 -0.40 -1.62 16 15 C -0.20 -4.42 9.99 -39.36 -0.39 -4.82 16 16 C 0.17 4.15 6.64 -39.14 -0.26 3.89 16 17 O -0.18 -5.08 9.76 0.05 0.00 -5.08 16 18 C -0.39 -10.90 9.44 30.89 0.29 -10.61 16 19 H 0.09 2.29 5.30 -52.49 -0.28 2.01 16 20 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 21 N -0.86 -25.31 13.67 55.48 0.76 -24.55 16 22 Si 0.94 20.43 29.55 -169.99 -5.02 15.41 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 26 C -0.26 -5.68 9.04 -39.21 -0.35 -6.03 16 27 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.37 1.21 9.05 45.56 0.41 1.62 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.50 7.82 -51.93 -0.41 0.09 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.40 3.09 8.49 -40.82 -0.35 2.74 16 38 H 0.40 4.89 8.83 -40.82 -0.36 4.53 16 39 H 0.12 2.34 6.43 -52.49 -0.34 2.00 16 40 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 42 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.13 2.77 5.72 -52.48 -0.30 2.47 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -35.12 364.25 -7.83 -42.94 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -5.40 Total: 9.67 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -2.83 Total: -9.63 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.32 Total: -43.63 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.38 Total: -20.25 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.12 -7.83 -42.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279193658.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.545 kcal (2) G-P(sol) polarization free energy of solvation -35.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds