Wall clock time and date at job start Fri Apr 10 2020 22:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47110 * 2 1 4 4 O 1.42905 * 109.47290 * 120.00184 * 2 1 3 5 5 C 1.53006 * 109.47212 * 239.99803 * 2 1 3 6 6 C 1.52995 * 109.46875 * 175.00177 * 5 2 1 7 7 C 1.53008 * 109.46929 * 180.02562 * 6 5 2 8 8 N 1.46497 * 109.46990 * 180.02562 * 7 6 5 9 9 C 1.34784 * 119.99660 * 180.02562 * 8 7 6 10 10 O 1.21589 * 120.00109 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99796 * 180.02562 * 9 8 7 12 12 C 1.39939 * 119.99758 * 174.73723 * 11 9 8 13 13 C 1.38956 * 120.03570 * 326.32472 * 12 11 9 14 14 C 1.38156 * 120.07081 * 180.02562 * 13 12 11 15 15 C 1.38175 * 120.13567 * 359.72119 * 14 13 12 16 16 C 1.38905 * 120.06692 * 0.55652 * 15 14 13 17 17 O 1.35755 * 120.03289 * 179.72231 * 16 15 14 18 18 C 1.34825 * 117.00011 * 173.82163 * 17 16 15 19 19 H 1.07996 * 119.99945 * 354.59785 * 18 17 16 20 20 C 1.38654 * 119.99933 * 174.60004 * 18 17 16 21 21 N 1.31562 * 119.99967 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99998 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47088 * 89.99781 * 22 20 18 24 24 H 1.48497 * 109.46655 * 209.99962 * 22 20 18 25 25 H 1.48498 * 109.46856 * 329.99802 * 22 20 18 26 26 C 1.38708 * 120.03895 * 146.35779 * 12 11 9 27 27 H 1.09005 * 109.47046 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47345 * 299.99519 * 1 2 3 29 29 H 1.08997 * 109.47140 * 60.00326 * 1 2 3 30 30 H 0.96703 * 113.99919 * 59.99338 * 4 2 1 31 31 H 1.09001 * 109.46603 * 55.00153 * 5 2 1 32 32 H 1.09001 * 109.47070 * 295.00018 * 5 2 1 33 33 H 1.08993 * 109.47791 * 60.00352 * 6 5 2 34 34 H 1.09001 * 109.47141 * 299.99797 * 6 5 2 35 35 H 1.09001 * 109.46888 * 59.99768 * 7 6 5 36 36 H 1.09001 * 109.46731 * 299.99666 * 7 6 5 37 37 H 0.96996 * 120.00079 * 359.97438 * 8 7 6 38 38 H 0.96996 * 119.99805 * 354.72075 * 11 9 8 39 39 H 1.08002 * 119.96782 * 0.02562 * 13 12 11 40 40 H 1.07998 * 119.93391 * 180.02562 * 14 13 12 41 41 H 1.08000 * 119.96247 * 180.28112 * 15 14 13 42 42 H 0.97000 * 120.00104 * 180.02562 * 21 20 18 43 43 H 1.08003 * 120.06084 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2493 6 6 3.5648 -0.6133 -1.3136 7 6 4.0748 -1.3341 -2.5632 8 7 5.5349 -1.2313 -2.6245 9 6 6.2078 -1.7957 -3.6469 10 8 5.6031 -2.3907 -4.5180 11 7 7.5511 -1.7016 -3.7030 12 6 8.2588 -2.3793 -4.7021 13 6 7.8047 -3.6086 -5.1641 14 6 8.5031 -4.2786 -6.1500 15 6 9.6517 -3.7262 -6.6838 16 6 10.1140 -2.5004 -6.2221 17 8 11.2456 -1.9611 -6.7431 18 6 11.5691 -0.7143 -6.3446 19 1 10.8947 -0.1580 -5.7105 20 6 12.7676 -0.1464 -6.7490 21 7 13.5894 -0.8242 -7.5210 22 14 13.2155 1.5813 -6.1975 23 1 13.9657 1.5135 -4.9177 24 1 14.0608 2.2279 -7.2332 25 1 11.9760 2.3758 -6.0033 26 6 9.4148 -1.8251 -5.2318 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.7209 -1.5953 1.2329 31 1 1.6053 -0.2618 -2.1370 32 1 1.7516 -1.7716 -1.2056 33 1 3.9994 -1.0728 -0.4260 34 1 3.8531 0.4369 -1.3573 35 1 3.6401 -0.8742 -3.4507 36 1 3.7864 -2.3844 -2.5199 37 1 6.0172 -0.7564 -1.9298 38 1 8.0272 -1.1639 -3.0511 39 1 6.9048 -4.0408 -4.7520 40 1 8.1479 -5.2337 -6.5077 41 1 10.1930 -4.2503 -7.4576 42 1 14.4280 -0.4270 -7.8036 43 1 9.7698 -0.8698 -4.8742 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279193658.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:05:21 Heat of formation + Delta-G solvation = -120.365558 kcal Electronic energy + Delta-G solvation = -24075.612773 eV Core-core repulsion = 20313.129267 eV Total energy + Delta-G solvation = -3762.483506 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.69127 -40.46670 -38.99397 -38.27151 -36.47239 -35.64612 -34.23827 -33.71220 -31.47959 -30.81312 -29.99793 -27.37169 -26.89134 -23.84580 -23.48074 -22.72595 -22.34626 -21.70109 -20.06846 -19.40577 -18.97985 -17.56343 -17.27013 -17.05748 -16.84375 -16.58743 -16.19474 -16.02789 -15.66226 -15.62270 -15.39972 -15.23479 -14.72671 -14.56368 -14.19780 -13.96019 -13.58969 -13.42002 -13.18158 -12.82469 -12.76968 -12.68016 -12.55048 -12.49226 -12.39624 -12.10652 -11.71164 -11.60913 -11.55142 -11.30683 -11.16472 -10.83951 -10.71447 -10.17495 -9.31847 -8.83050 -8.45170 -6.13778 0.46001 0.71980 1.36477 1.45648 1.53779 1.55512 2.04269 2.18883 2.85873 3.13536 3.19560 3.50971 3.53155 3.76043 4.00501 4.08826 4.13096 4.28199 4.34607 4.43153 4.46723 4.49840 4.64540 4.65937 4.72349 4.77150 4.88334 4.98303 5.03446 5.07814 5.12285 5.25834 5.31091 5.35568 5.38705 5.45659 5.49862 5.68904 5.70201 5.96646 6.03125 6.22011 6.90419 6.94276 6.99224 7.44268 7.79066 8.77795 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.018621 B = 0.002316 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.353276 B =12087.515656 C =13337.240480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.102 3.898 3 H 0.094 0.906 4 O -0.583 6.583 5 C -0.144 4.144 6 C -0.116 4.116 7 C 0.138 3.862 8 N -0.727 5.727 9 C 0.699 3.301 10 O -0.612 6.612 11 N -0.674 5.674 12 C 0.206 3.794 13 C -0.200 4.200 14 C -0.051 4.051 15 C -0.215 4.215 16 C 0.135 3.865 17 O -0.226 6.226 18 C -0.412 4.412 19 H 0.102 0.898 20 C -0.023 4.023 21 N -0.919 5.919 22 Si 1.019 2.981 23 H -0.261 1.261 24 H -0.273 1.273 25 H -0.254 1.254 26 C -0.261 4.261 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.387 0.613 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.413 0.587 38 H 0.420 0.580 39 H 0.129 0.871 40 H 0.154 0.846 41 H 0.120 0.880 42 H 0.272 0.728 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.312 2.224 17.380 29.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.044 3.956 3 H 0.112 0.888 4 O -0.390 6.390 5 C -0.183 4.183 6 C -0.154 4.154 7 C 0.014 3.986 8 N -0.383 5.383 9 C 0.400 3.600 10 O -0.491 6.491 11 N -0.322 5.322 12 C 0.110 3.890 13 C -0.221 4.221 14 C -0.070 4.070 15 C -0.235 4.235 16 C 0.084 3.916 17 O -0.133 6.133 18 C -0.488 4.488 19 H 0.119 0.881 20 C -0.221 4.221 21 N -0.557 5.557 22 Si 0.838 3.162 23 H -0.186 1.186 24 H -0.198 1.198 25 H -0.177 1.177 26 C -0.283 4.283 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.236 0.764 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.250 0.750 38 H 0.257 0.743 39 H 0.147 0.853 40 H 0.172 0.828 41 H 0.138 0.862 42 H 0.081 0.919 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -23.317 2.228 16.519 28.662 hybrid contribution 0.737 0.567 0.266 0.967 sum -22.580 2.795 16.784 28.274 Atomic orbital electron populations 1.22477 0.95698 1.03113 1.02866 1.21923 0.93302 0.96499 0.83923 0.88822 1.86563 1.77577 1.30346 1.44554 1.22203 0.94577 1.02249 0.99249 1.21652 0.96454 1.01118 0.96186 1.21334 0.77205 1.00915 0.99136 1.45020 1.08391 1.59227 1.25679 1.16082 0.81221 0.79959 0.82761 1.90920 1.68206 1.48918 1.41086 1.42448 1.05294 1.52284 1.32222 1.17191 0.90977 0.90912 0.89899 1.20858 1.02860 0.95032 1.03330 1.20913 0.92226 0.99489 0.94323 1.20470 1.00752 0.96132 1.06163 1.19585 0.87044 0.93236 0.91759 1.83985 1.36323 1.31318 1.61630 1.21774 1.05269 0.88525 1.33210 0.88119 1.26592 0.94351 1.04844 0.96283 1.70188 1.11009 1.39935 1.34574 0.84584 0.79031 0.74283 0.78289 1.18584 1.19832 1.17743 1.20798 1.00541 1.03365 1.03611 0.91576 0.92309 0.90927 0.76367 0.90138 0.90535 0.90376 0.90704 0.92596 0.92235 0.75023 0.74273 0.85332 0.82841 0.86222 0.91857 0.85291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.22 9.53 71.98 0.69 -0.54 16 2 C 0.10 0.87 3.59 30.59 0.11 0.98 16 3 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 4 O -0.58 -6.40 12.88 -148.98 -1.92 -8.32 16 5 C -0.14 -1.13 4.89 30.59 0.15 -0.98 16 6 C -0.12 -1.16 5.23 30.60 0.16 -1.00 16 7 C 0.14 2.23 5.67 86.38 0.49 2.72 16 8 N -0.73 -13.68 5.56 -478.51 -2.66 -16.35 16 9 C 0.70 20.25 8.30 179.05 1.49 21.73 16 10 O -0.61 -22.85 14.05 -4.00 -0.06 -22.90 16 11 N -0.67 -19.63 5.35 -317.22 -1.70 -21.33 16 12 C 0.21 7.83 6.27 38.13 0.24 8.07 16 13 C -0.20 -7.55 8.65 22.42 0.19 -7.36 16 14 C -0.05 -1.89 10.03 22.24 0.22 -1.67 16 15 C -0.22 -9.48 9.99 22.41 0.22 -9.26 16 16 C 0.14 6.81 6.64 22.56 0.15 6.96 16 17 O -0.23 -13.58 9.76 -22.74 -0.22 -13.81 16 18 C -0.41 -23.70 9.44 67.92 0.64 -23.06 16 19 H 0.10 5.28 5.30 -2.91 -0.02 5.27 16 20 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 21 N -0.92 -56.06 13.67 21.61 0.30 -55.77 16 22 Si 1.02 42.19 29.55 68.60 2.03 44.22 16 23 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 25 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 26 C -0.26 -11.51 9.04 22.51 0.20 -11.31 16 27 H 0.07 0.35 8.14 -2.38 -0.02 0.33 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.39 1.74 9.05 -74.05 -0.67 1.07 16 31 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.08 0.80 7.82 -2.39 -0.02 0.78 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.41 5.14 8.49 -92.71 -0.79 4.36 16 38 H 0.42 9.19 8.83 -92.71 -0.82 8.37 16 39 H 0.13 4.72 6.43 -2.91 -0.02 4.70 16 40 H 0.15 4.46 8.06 -2.91 -0.02 4.44 16 41 H 0.12 5.10 8.06 -2.91 -0.02 5.08 16 42 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 43 H 0.13 5.57 5.72 -2.91 -0.02 5.55 16 Total: -1.00 -78.65 364.25 -0.03 -78.68 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: -1.22 Total: 31.12 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 5.42 Total: -15.54 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -4.06 Total: -93.44 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: -2.20 Total: -45.03 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -78.65 -0.03 -78.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279193658.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.690 kcal (2) G-P(sol) polarization free energy of solvation -78.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds