Wall clock time and date at job start Fri Apr 10 2020 22:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.47375 * 2 1 4 4 C 1.46494 * 119.99802 * 270.00042 * 3 2 1 5 5 C 1.53001 * 109.47043 * 269.99885 * 4 3 2 6 6 O 1.42894 * 109.47270 * 65.00200 * 5 4 3 7 7 C 1.42893 * 114.00247 * 180.02562 * 6 5 4 8 8 C 1.34772 * 119.99647 * 89.99469 * 3 2 1 9 9 O 1.21596 * 119.99630 * 179.97438 * 8 3 2 10 10 N 1.34774 * 120.00536 * 0.02562 * 8 3 2 11 11 C 1.39945 * 120.00303 * 174.68698 * 10 8 3 12 12 C 1.38957 * 120.03274 * 326.34550 * 11 10 8 13 13 C 1.38162 * 120.06560 * 180.02562 * 12 11 10 14 14 C 1.38174 * 120.13691 * 359.72203 * 13 12 11 15 15 C 1.38902 * 120.06833 * 0.55244 * 14 13 12 16 16 O 1.35755 * 120.03346 * 179.72219 * 15 14 13 17 17 C 1.34827 * 116.99851 * 173.82281 * 16 15 14 18 18 H 1.07999 * 120.00285 * 354.59576 * 17 16 15 19 19 C 1.38656 * 120.00065 * 174.59479 * 17 16 15 20 20 N 1.31559 * 119.99739 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00454 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46846 * 89.99871 * 21 19 17 23 23 H 1.48492 * 109.47379 * 209.99971 * 21 19 17 24 24 H 1.48509 * 109.47076 * 330.00344 * 21 19 17 25 25 C 1.38706 * 120.03707 * 146.36285 * 11 10 8 26 26 H 1.09003 * 109.47102 * 300.00133 * 1 2 3 27 27 H 1.09004 * 109.46687 * 60.00062 * 1 2 3 28 28 H 1.08994 * 109.47183 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47102 * 239.99867 * 2 1 3 30 30 H 1.09004 * 109.46687 * 119.99938 * 2 1 3 31 31 H 1.09005 * 109.47360 * 30.00075 * 4 3 2 32 32 H 1.09002 * 109.47111 * 149.99577 * 4 3 2 33 33 H 1.09004 * 109.46718 * 185.00202 * 5 4 3 34 34 H 1.08998 * 109.46990 * 305.00045 * 5 4 3 35 35 H 1.09000 * 109.47700 * 180.02562 * 7 6 5 36 36 H 1.09006 * 109.47053 * 299.99943 * 7 6 5 37 37 H 1.09002 * 109.47452 * 59.99820 * 7 6 5 38 38 H 0.96999 * 119.99569 * 354.68522 * 10 8 3 39 39 H 1.07991 * 119.97018 * 359.97438 * 12 11 10 40 40 H 1.08002 * 119.93094 * 179.97438 * 13 12 11 41 41 H 1.08002 * 119.96102 * 180.27619 * 14 13 12 42 42 H 0.96999 * 120.00227 * 179.97438 * 20 19 17 43 43 H 1.08000 * 120.06661 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.7076 1.8313 -1.7104 6 8 3.8944 0.4432 -1.9935 7 6 5.2179 0.1092 -2.4163 8 6 2.2430 2.0165 1.1672 9 8 2.6488 3.1627 1.1672 10 7 2.0187 1.3811 2.3344 11 6 2.3562 1.9992 3.5438 12 6 3.4639 2.8354 3.6121 13 6 3.7980 3.4455 4.8058 14 6 3.0290 3.2310 5.9336 15 6 1.9239 2.3917 5.8731 16 8 1.1722 2.1769 6.9830 17 6 0.0433 1.4564 6.8276 18 1 -0.2725 1.1536 5.8402 19 6 -0.7124 1.1042 7.9355 20 7 -0.3279 1.4735 9.1383 21 14 -2.2769 0.1066 7.7203 22 1 -1.9542 -1.3413 7.7899 23 1 -3.2367 0.4522 8.7994 24 1 -2.8835 0.4157 6.4005 25 6 1.5856 1.7774 4.6756 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5818 1.6877 -2.0284 32 1 2.0956 3.1410 -1.1384 33 1 3.9157 2.4161 -2.6064 34 1 4.3864 2.1340 -0.9131 35 1 5.2776 -0.9615 -2.6118 36 1 5.4578 0.6583 -3.3269 37 1 5.9278 0.3761 -1.6334 38 1 1.6234 0.4953 2.3362 39 1 4.0647 3.0079 2.7314 40 1 4.6596 4.0948 4.8565 41 1 3.2902 3.7129 6.8642 42 1 -0.8567 1.2274 9.9134 43 1 0.7242 1.1280 4.6249 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299131873.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:05:54 Heat of formation + Delta-G solvation = -63.851378 kcal Electronic energy + Delta-G solvation = -25475.499458 eV Core-core repulsion = 21715.466591 eV Total energy + Delta-G solvation = -3760.032867 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.59951 -38.89393 -38.07639 -36.66597 -35.75351 -34.24131 -32.21151 -31.61799 -29.76887 -28.97706 -28.16052 -26.50410 -25.27645 -23.61380 -23.48211 -21.76595 -21.42009 -19.56118 -18.40851 -17.86565 -17.30094 -16.71602 -16.41730 -15.87861 -15.53094 -15.10743 -14.82310 -14.80364 -14.30198 -14.17478 -14.03946 -13.90794 -13.50328 -13.14237 -12.93663 -12.78392 -12.33583 -12.20303 -12.13866 -11.97556 -11.70353 -11.55637 -11.48045 -11.25064 -11.06766 -10.96873 -10.70856 -10.41692 -10.03715 -9.87731 -9.57488 -9.44439 -8.80355 -8.75636 -7.65173 -7.09048 -6.42306 -4.01768 2.10488 2.43951 2.64101 3.12761 3.13670 3.18636 3.31389 3.54615 3.92084 3.98366 4.64881 4.74419 4.80496 4.90805 4.98695 5.05242 5.11240 5.13311 5.14937 5.24536 5.31959 5.34923 5.45243 5.56474 5.60307 5.68275 5.74169 6.01833 6.05531 6.13978 6.24531 6.31550 6.43473 6.61835 6.80174 6.91083 7.05679 7.14977 7.28215 7.38014 7.47126 7.87354 8.00567 8.02899 8.67295 9.03306 9.74613 10.75961 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017530 B = 0.003393 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.859303 B = 8251.024916 C = 9406.624391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.106 3.894 3 N -0.623 5.623 4 C 0.138 3.862 5 C 0.043 3.957 6 O -0.389 6.389 7 C 0.033 3.967 8 C 0.705 3.295 9 O -0.573 6.573 10 N -0.681 5.681 11 C 0.199 3.801 12 C -0.204 4.204 13 C -0.063 4.063 14 C -0.203 4.203 15 C 0.169 3.831 16 O -0.177 6.177 17 C -0.391 4.391 18 H 0.090 0.910 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.939 3.061 22 H -0.274 1.274 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.258 4.258 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.039 0.961 37 H 0.040 0.960 38 H 0.402 0.598 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.117 0.883 42 H 0.269 0.731 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.525 -4.374 -21.842 22.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.017 4.017 3 N -0.360 5.360 4 C 0.015 3.985 5 C -0.035 4.035 6 O -0.308 6.308 7 C -0.064 4.064 8 C 0.407 3.593 9 O -0.450 6.450 10 N -0.329 5.329 11 C 0.105 3.895 12 C -0.225 4.225 13 C -0.082 4.082 14 C -0.223 4.223 15 C 0.115 3.885 16 O -0.081 6.081 17 C -0.467 4.467 18 H 0.107 0.893 19 C -0.165 4.165 20 N -0.499 5.499 21 Si 0.764 3.236 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.193 1.193 25 C -0.280 4.280 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.239 0.761 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.079 0.921 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.606 -3.642 -21.398 22.418 hybrid contribution -0.791 -0.922 -0.241 1.238 sum 4.816 -4.564 -21.639 22.633 Atomic orbital electron populations 1.22276 0.95953 1.02446 1.02772 1.21552 0.94046 0.82410 1.03699 1.47086 1.70130 1.14376 1.04427 1.21345 0.94261 0.98824 0.84109 1.23082 0.98444 0.82510 0.99467 1.87843 1.29964 1.25224 1.87819 1.22711 0.84260 1.01222 0.98214 1.15871 0.78736 0.84368 0.80277 1.90930 1.51999 1.16138 1.85898 1.42756 1.65711 1.20613 1.03808 1.17208 0.93535 0.95499 0.83262 1.20547 0.98933 1.04723 0.98319 1.20520 0.98051 0.97886 0.91729 1.20229 0.97962 1.04748 0.99325 1.19058 0.90568 0.92171 0.86666 1.84019 1.32453 1.63854 1.27739 1.21263 0.97842 1.32795 0.94800 0.89310 1.25264 0.99382 0.97575 0.94272 1.70037 1.38603 1.43185 0.98031 0.85743 0.80026 0.79380 0.78451 1.19925 1.20271 1.19276 1.20774 1.03972 1.10312 0.92921 0.92241 0.92199 0.91310 0.88998 0.91022 0.89801 0.88152 0.92478 0.92544 0.89778 0.94259 0.94132 0.76146 0.86344 0.86710 0.86444 0.92067 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 10.24 37.16 0.38 -1.14 16 2 C 0.11 1.00 5.67 -4.04 -0.02 0.97 16 3 N -0.62 -7.45 2.44 -179.42 -0.44 -7.88 16 4 C 0.14 1.38 5.81 -4.04 -0.02 1.35 16 5 C 0.04 0.41 6.28 37.16 0.23 0.64 16 6 O -0.39 -3.79 9.53 -35.23 -0.34 -4.13 16 7 C 0.03 0.24 11.01 101.05 1.11 1.35 16 8 C 0.71 11.31 8.01 -86.92 -0.70 10.62 16 9 O -0.57 -11.05 13.63 5.28 0.07 -10.98 16 10 N -0.68 -11.11 5.17 -14.24 -0.07 -11.18 16 11 C 0.20 3.96 6.27 -83.71 -0.52 3.44 16 12 C -0.20 -4.07 8.65 -39.34 -0.34 -4.41 16 13 C -0.06 -1.22 10.03 -39.63 -0.40 -1.62 16 14 C -0.20 -4.45 9.99 -39.36 -0.39 -4.84 16 15 C 0.17 4.18 6.64 -39.14 -0.26 3.92 16 16 O -0.18 -5.09 9.76 0.04 0.00 -5.09 16 17 C -0.39 -10.92 9.44 30.89 0.29 -10.63 16 18 H 0.09 2.30 5.30 -52.49 -0.28 2.02 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -25.40 13.67 55.48 0.76 -24.64 16 21 Si 0.94 20.45 29.55 -169.99 -5.02 15.43 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 C -0.26 -5.72 9.04 -39.21 -0.35 -6.07 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.79 7.11 -51.93 -0.37 0.42 16 30 H 0.07 0.66 6.45 -51.93 -0.33 0.33 16 31 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 32 H 0.10 1.08 7.42 -51.93 -0.39 0.70 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.40 5.48 6.63 -40.82 -0.27 5.21 16 39 H 0.12 2.33 6.43 -52.49 -0.34 1.99 16 40 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 41 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 42 H 0.27 7.26 8.31 -40.82 -0.34 6.93 16 43 H 0.13 2.79 5.71 -52.49 -0.30 2.49 16 LS Contribution 360.33 15.07 5.43 5.43 Total: -1.00 -33.73 360.33 -6.76 -40.49 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -6.06 Total: 7.99 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -1.09 Total: -5.44 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: 0.25 Total: -43.70 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.26 Total: -20.20 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.73 -6.76 -40.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299131873.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.363 kcal (2) G-P(sol) polarization free energy of solvation -33.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds