Wall clock time and date at job start Fri Apr 10 2020 22:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.47375 * 2 1 4 4 C 1.46494 * 119.99802 * 270.00042 * 3 2 1 5 5 C 1.53001 * 109.47043 * 269.99885 * 4 3 2 6 6 O 1.42894 * 109.47270 * 65.00200 * 5 4 3 7 7 C 1.42893 * 114.00247 * 180.02562 * 6 5 4 8 8 C 1.34772 * 119.99647 * 89.99469 * 3 2 1 9 9 O 1.21596 * 119.99630 * 179.97438 * 8 3 2 10 10 N 1.34774 * 120.00536 * 0.02562 * 8 3 2 11 11 C 1.39945 * 120.00303 * 174.68698 * 10 8 3 12 12 C 1.38957 * 120.03274 * 326.34550 * 11 10 8 13 13 C 1.38162 * 120.06560 * 180.02562 * 12 11 10 14 14 C 1.38174 * 120.13691 * 359.72203 * 13 12 11 15 15 C 1.38902 * 120.06833 * 0.55244 * 14 13 12 16 16 O 1.35755 * 120.03346 * 179.72219 * 15 14 13 17 17 C 1.34827 * 116.99851 * 173.82281 * 16 15 14 18 18 H 1.07999 * 120.00285 * 354.59576 * 17 16 15 19 19 C 1.38656 * 120.00065 * 174.59479 * 17 16 15 20 20 N 1.31559 * 119.99739 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00454 * 179.97438 * 19 17 16 22 22 H 1.48509 * 109.46846 * 89.99871 * 21 19 17 23 23 H 1.48492 * 109.47379 * 209.99971 * 21 19 17 24 24 H 1.48509 * 109.47076 * 330.00344 * 21 19 17 25 25 C 1.38706 * 120.03707 * 146.36285 * 11 10 8 26 26 H 1.09003 * 109.47102 * 300.00133 * 1 2 3 27 27 H 1.09004 * 109.46687 * 60.00062 * 1 2 3 28 28 H 1.08994 * 109.47183 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47102 * 239.99867 * 2 1 3 30 30 H 1.09004 * 109.46687 * 119.99938 * 2 1 3 31 31 H 1.09005 * 109.47360 * 30.00075 * 4 3 2 32 32 H 1.09002 * 109.47111 * 149.99577 * 4 3 2 33 33 H 1.09004 * 109.46718 * 185.00202 * 5 4 3 34 34 H 1.08998 * 109.46990 * 305.00045 * 5 4 3 35 35 H 1.09000 * 109.47700 * 180.02562 * 7 6 5 36 36 H 1.09006 * 109.47053 * 299.99943 * 7 6 5 37 37 H 1.09002 * 109.47452 * 59.99820 * 7 6 5 38 38 H 0.96999 * 119.99569 * 354.68522 * 10 8 3 39 39 H 1.07991 * 119.97018 * 359.97438 * 12 11 10 40 40 H 1.08002 * 119.93094 * 179.97438 * 13 12 11 41 41 H 1.08002 * 119.96102 * 180.27619 * 14 13 12 42 42 H 0.96999 * 120.00227 * 179.97438 * 20 19 17 43 43 H 1.08000 * 120.06661 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.7076 1.8313 -1.7104 6 8 3.8944 0.4432 -1.9935 7 6 5.2179 0.1092 -2.4163 8 6 2.2430 2.0165 1.1672 9 8 2.6488 3.1627 1.1672 10 7 2.0187 1.3811 2.3344 11 6 2.3562 1.9992 3.5438 12 6 3.4639 2.8354 3.6121 13 6 3.7980 3.4455 4.8058 14 6 3.0290 3.2310 5.9336 15 6 1.9239 2.3917 5.8731 16 8 1.1722 2.1769 6.9830 17 6 0.0433 1.4564 6.8276 18 1 -0.2725 1.1536 5.8402 19 6 -0.7124 1.1042 7.9355 20 7 -0.3279 1.4735 9.1383 21 14 -2.2769 0.1066 7.7203 22 1 -1.9542 -1.3413 7.7899 23 1 -3.2367 0.4522 8.7994 24 1 -2.8835 0.4157 6.4005 25 6 1.5856 1.7774 4.6756 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5818 1.6877 -2.0284 32 1 2.0956 3.1410 -1.1384 33 1 3.9157 2.4161 -2.6064 34 1 4.3864 2.1340 -0.9131 35 1 5.2776 -0.9615 -2.6118 36 1 5.4578 0.6583 -3.3269 37 1 5.9278 0.3761 -1.6334 38 1 1.6234 0.4953 2.3362 39 1 4.0647 3.0079 2.7314 40 1 4.6596 4.0948 4.8565 41 1 3.2902 3.7129 6.8642 42 1 -0.8567 1.2274 9.9134 43 1 0.7242 1.1280 4.6249 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299131873.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:05:53 Heat of formation + Delta-G solvation = -85.947631 kcal Electronic energy + Delta-G solvation = -25476.457623 eV Core-core repulsion = 21715.466591 eV Total energy + Delta-G solvation = -3760.991033 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.89094 -40.56772 -39.00244 -38.19389 -36.90631 -35.69909 -34.21819 -32.44025 -31.12503 -30.50837 -29.48408 -27.33110 -27.10621 -24.71498 -24.26975 -23.49351 -22.82281 -20.97003 -19.74928 -19.55272 -18.78602 -17.74785 -17.28220 -17.08847 -16.75775 -16.64165 -16.13023 -16.07688 -15.73676 -15.51837 -15.42387 -15.26959 -14.81941 -14.56277 -14.28984 -13.88255 -13.56630 -13.44678 -13.23916 -12.99354 -12.82118 -12.77575 -12.70100 -12.66387 -12.38999 -12.20560 -12.10518 -11.95449 -11.48643 -11.27224 -11.10593 -10.71612 -10.62584 -9.80630 -9.30929 -8.82710 -8.45487 -6.14120 0.45437 0.71565 1.36368 1.45342 1.50298 1.53989 2.01676 2.18907 2.78513 2.84557 2.86879 3.18860 3.50440 3.96497 4.06965 4.09741 4.18156 4.32779 4.33553 4.34260 4.45888 4.47277 4.54279 4.56566 4.64763 4.66286 4.73737 4.81595 4.86399 4.91110 4.96799 5.02994 5.11960 5.29769 5.33010 5.48422 5.57817 5.68215 5.69343 5.87115 6.02876 6.20131 6.20998 6.78149 6.98937 7.40577 7.78645 8.77646 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017530 B = 0.003393 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.859303 B = 8251.024916 C = 9406.624391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.104 3.896 3 N -0.613 5.613 4 C 0.133 3.867 5 C 0.048 3.952 6 O -0.402 6.402 7 C 0.028 3.972 8 C 0.701 3.299 9 O -0.609 6.609 10 N -0.676 5.676 11 C 0.205 3.795 12 C -0.199 4.199 13 C -0.050 4.050 14 C -0.215 4.215 15 C 0.137 3.863 16 O -0.225 6.225 17 C -0.412 4.412 18 H 0.101 0.899 19 C -0.021 4.021 20 N -0.920 5.920 21 Si 1.018 2.982 22 H -0.260 1.260 23 H -0.273 1.273 24 H -0.254 1.254 25 C -0.261 4.261 26 H 0.038 0.962 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.032 0.968 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.034 0.966 38 H 0.415 0.585 39 H 0.127 0.873 40 H 0.154 0.846 41 H 0.120 0.880 42 H 0.273 0.727 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.381 -5.575 -24.974 26.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.349 5.349 4 C 0.010 3.990 5 C -0.029 4.029 6 O -0.321 6.321 7 C -0.068 4.068 8 C 0.403 3.597 9 O -0.488 6.488 10 N -0.325 5.325 11 C 0.110 3.890 12 C -0.220 4.220 13 C -0.068 4.068 14 C -0.235 4.235 15 C 0.086 3.914 16 O -0.132 6.132 17 C -0.489 4.489 18 H 0.118 0.882 19 C -0.219 4.219 20 N -0.558 5.558 21 Si 0.837 3.163 22 H -0.185 1.185 23 H -0.198 1.198 24 H -0.177 1.177 25 C -0.283 4.283 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.126 0.874 30 H 0.091 0.909 31 H 0.130 0.870 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.050 0.950 35 H 0.116 0.884 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.254 0.746 39 H 0.145 0.855 40 H 0.172 0.828 41 H 0.138 0.862 42 H 0.082 0.918 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.484 -4.877 -24.621 25.692 hybrid contribution -0.536 -0.495 0.468 0.867 sum 4.948 -5.372 -24.153 25.233 Atomic orbital electron populations 1.22234 0.95068 1.03539 1.02063 1.21752 0.94659 0.80863 1.04560 1.47202 1.68762 1.15199 1.03691 1.21558 0.95441 0.98371 0.83598 1.22980 0.97323 0.82992 0.99635 1.87806 1.31233 1.25079 1.87992 1.22860 0.83079 1.02348 0.98546 1.16038 0.78581 0.84075 0.80962 1.90898 1.53672 1.17754 1.86499 1.42650 1.65764 1.21075 1.02968 1.17232 0.92886 0.94999 0.83922 1.20829 0.98564 1.03873 0.98694 1.20906 0.98298 0.97271 0.90374 1.20466 0.97799 1.04677 1.00556 1.19565 0.91499 0.93577 0.86803 1.83985 1.33627 1.65719 1.29830 1.21776 0.98363 1.32987 0.95728 0.88210 1.26576 1.03147 0.98581 0.93596 1.70184 1.40806 1.45620 0.99174 0.84602 0.74927 0.77796 0.78987 1.18517 1.19771 1.17727 1.20777 1.04261 1.10312 0.92980 0.94238 0.91567 0.89359 0.87391 0.90897 0.87036 0.89154 0.90207 0.94989 0.88408 0.92840 0.94772 0.74632 0.85469 0.82826 0.86164 0.91819 0.85504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 10.24 71.98 0.74 -1.76 16 2 C 0.10 1.67 5.67 86.38 0.49 2.16 16 3 N -0.61 -13.43 2.44 -839.81 -2.05 -15.48 16 4 C 0.13 2.35 5.81 86.38 0.50 2.86 16 5 C 0.05 0.82 6.28 71.98 0.45 1.27 16 6 O -0.40 -6.77 9.53 -148.98 -1.42 -8.19 16 7 C 0.03 0.34 11.01 113.37 1.25 1.59 16 8 C 0.70 21.58 8.01 179.06 1.44 23.02 16 9 O -0.61 -22.91 13.63 -4.02 -0.05 -22.96 16 10 N -0.68 -21.26 5.17 -317.23 -1.64 -22.90 16 11 C 0.21 8.04 6.27 38.13 0.24 8.28 16 12 C -0.20 -7.64 8.65 22.42 0.19 -7.44 16 13 C -0.05 -1.87 10.03 22.24 0.22 -1.65 16 14 C -0.22 -9.54 9.99 22.41 0.22 -9.31 16 15 C 0.14 6.96 6.64 22.56 0.15 7.11 16 16 O -0.23 -13.59 9.76 -22.76 -0.22 -13.81 16 17 C -0.41 -23.89 9.44 67.92 0.64 -23.25 16 18 H 0.10 5.29 5.30 -2.91 -0.02 5.28 16 19 C -0.02 -1.21 5.49 84.83 0.47 -0.74 16 20 N -0.92 -56.29 13.67 21.61 0.30 -56.00 16 21 Si 1.02 42.32 29.55 68.60 2.03 44.35 16 22 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 24 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 25 C -0.26 -11.74 9.04 22.51 0.20 -11.54 16 26 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.11 1.47 7.11 -2.39 -0.02 1.46 16 30 H 0.07 1.17 6.45 -2.38 -0.02 1.16 16 31 H 0.11 1.38 8.07 -2.38 -0.02 1.36 16 32 H 0.09 1.82 7.42 -2.39 -0.02 1.80 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.05 0.50 8.14 -2.38 -0.02 0.49 16 37 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.41 10.75 6.63 -92.71 -0.61 10.13 16 39 H 0.13 4.77 6.43 -2.92 -0.02 4.75 16 40 H 0.15 4.51 8.06 -2.91 -0.02 4.49 16 41 H 0.12 5.15 8.06 -2.91 -0.02 5.13 16 42 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 43 H 0.13 5.62 5.71 -2.91 -0.02 5.60 16 Total: -1.00 -76.13 360.33 4.56 -71.57 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: 0.41 Total: 32.83 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 7.20 Total: -9.40 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -3.39 Total: -94.37 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -1.70 Total: -44.96 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -76.13 4.56 -71.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299131873.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.379 kcal (2) G-P(sol) polarization free energy of solvation -76.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds