Wall clock time and date at job start Fri Apr 10 2020 22:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36065 * 117.00036 * 2 1 4 4 C 1.38557 * 120.00363 * 0.02562 * 3 2 1 5 5 C 1.38187 * 120.07134 * 179.69909 * 4 3 2 6 6 C 1.38845 * 120.06936 * 0.55152 * 5 4 3 7 7 N 1.40100 * 119.99630 * 179.72379 * 6 5 4 8 8 C 1.34777 * 119.99861 * 324.73091 * 7 6 5 9 9 O 1.21293 * 119.99959 * 6.31924 * 8 7 6 10 10 C 1.50695 * 120.00047 * 186.32488 * 8 7 6 11 11 H 1.09003 * 109.47372 * 59.99313 * 10 8 7 12 12 C 1.53007 * 109.46918 * 299.99806 * 10 8 7 13 13 N 1.46505 * 109.47526 * 179.97438 * 10 8 7 14 14 C 1.46498 * 119.99704 * 59.99387 * 13 10 8 15 15 C 1.36937 * 120.00081 * 240.00030 * 13 10 8 16 16 H 1.08010 * 119.99883 * 37.82839 * 15 13 10 17 17 C 1.38811 * 119.99986 * 217.82926 * 15 13 10 18 18 N 1.31620 * 119.99999 * 25.94995 * 17 15 13 19 19 Si 1.86800 * 119.99898 * 205.67260 * 17 15 13 20 20 H 1.48498 * 109.47162 * 0.02562 * 19 17 15 21 21 H 1.48509 * 109.46619 * 119.99721 * 19 17 15 22 22 H 1.48494 * 109.47157 * 239.99718 * 19 17 15 23 23 C 1.38811 * 120.00916 * 359.44822 * 6 5 4 24 24 C 1.38502 * 119.92854 * 0.27255 * 23 6 5 25 25 O 1.36000 * 120.03594 * 179.97438 * 24 23 6 26 26 C 1.42898 * 116.99754 * 0.02562 * 25 24 23 27 27 H 1.08997 * 109.46682 * 59.99942 * 1 2 3 28 28 H 1.08998 * 109.46669 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46893 * 300.00055 * 1 2 3 30 30 H 1.08005 * 119.96299 * 359.97438 * 4 3 2 31 31 H 1.07993 * 119.96498 * 180.29251 * 5 4 3 32 32 H 0.96998 * 120.00023 * 144.72839 * 7 6 5 33 33 H 1.09003 * 109.46697 * 299.99921 * 12 10 8 34 34 H 1.08996 * 109.47205 * 60.00267 * 12 10 8 35 35 H 1.09004 * 109.47149 * 179.97438 * 12 10 8 36 36 H 1.09004 * 109.47110 * 273.24884 * 14 13 10 37 37 H 1.08999 * 109.47318 * 33.25215 * 14 13 10 38 38 H 1.09005 * 109.46844 * 153.25187 * 14 13 10 39 39 H 0.97004 * 119.99574 * 3.92438 * 18 17 15 40 40 H 1.07998 * 120.03534 * 180.25486 * 23 6 5 41 41 H 1.08995 * 109.47447 * 60.00067 * 26 25 24 42 42 H 1.09002 * 109.46743 * 179.97438 * 26 25 24 43 43 H 1.09006 * 109.46912 * 299.99665 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2123 0.0000 4 6 1.2922 2.3744 0.0005 5 6 1.9181 3.6064 0.0068 6 6 3.3045 3.6824 0.0010 7 7 3.9374 4.9323 0.0016 8 6 3.3888 5.9658 -0.6673 9 8 2.2927 5.8474 -1.1732 10 6 4.1371 7.2683 -0.7869 11 1 5.0848 7.0974 -1.2976 12 6 4.4050 7.8326 0.6099 13 7 3.3347 8.2240 -1.5545 14 6 2.0089 8.6202 -1.0732 15 6 3.8238 8.7467 -2.7218 16 1 4.4004 8.1259 -3.3917 17 6 3.5785 10.0744 -3.0442 18 7 3.3534 10.9526 -2.0900 19 14 3.5754 10.6162 -4.8319 20 1 3.8584 9.4478 -5.7037 21 1 2.2451 11.1794 -5.1761 22 1 4.6196 11.6519 -5.0370 23 6 4.0635 2.5202 0.0005 24 6 3.4364 1.2853 0.0001 25 8 4.1779 0.1453 -0.0010 26 6 5.5989 0.2957 -0.0010 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2137 2.3173 0.0005 31 1 1.3283 4.5110 0.0120 32 1 4.7704 5.0539 0.4834 33 1 3.4573 8.0035 1.1206 34 1 5.0023 7.1215 1.1806 35 1 4.9467 8.7745 0.5235 36 1 1.2648 7.9088 -1.4314 37 1 2.0063 8.6310 0.0168 38 1 1.7693 9.6157 -1.4469 39 1 3.4152 10.6845 -1.1598 40 1 5.1419 2.5789 0.0002 41 1 5.9063 0.8441 0.8894 42 1 6.0684 -0.6880 -0.0014 43 1 5.9061 0.8457 -0.8906 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299696303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:06:01 Heat of formation + Delta-G solvation = -49.127362 kcal Electronic energy + Delta-G solvation = -25677.871670 eV Core-core repulsion = 21918.477284 eV Total energy + Delta-G solvation = -3759.394386 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.79452 -39.60190 -38.50488 -37.03502 -35.56693 -34.04316 -32.20062 -30.37636 -29.78302 -28.84445 -27.37866 -26.90720 -26.09235 -24.14993 -22.82851 -22.24640 -21.23461 -19.53533 -18.66474 -17.75397 -17.33470 -17.00702 -16.26264 -16.09326 -15.78929 -15.34881 -14.94300 -14.59265 -14.51624 -14.38862 -13.83399 -13.79430 -13.49315 -13.15660 -12.75276 -12.73384 -12.44877 -12.28891 -11.89420 -11.60317 -11.49946 -11.31004 -11.27786 -11.19530 -10.95422 -10.80697 -10.70368 -10.51021 -10.07682 -9.67335 -9.45407 -9.21230 -8.61582 -8.37779 -7.49457 -6.83581 -6.09610 -3.42531 1.21134 1.43178 3.06771 3.11897 3.19385 3.36727 3.49877 3.53036 3.67375 3.77043 4.54188 4.69687 4.86680 4.91779 4.99639 5.04684 5.09650 5.19689 5.23339 5.24448 5.30979 5.32218 5.37122 5.37845 5.48741 5.75136 5.81275 5.85741 6.06037 6.31051 6.32352 6.44329 6.45634 6.56104 6.70798 6.91962 6.94670 7.10337 7.27292 7.51005 7.67318 8.04383 8.53153 8.61747 9.06473 9.75528 10.19803 11.11204 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.021033 B = 0.003127 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.919103 B = 8951.665305 C = 9270.947062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.074 3.926 4 C -0.151 4.151 5 C -0.119 4.119 6 C 0.162 3.838 7 N -0.683 5.683 8 C 0.493 3.507 9 O -0.504 6.504 10 C 0.157 3.843 11 H 0.094 0.906 12 C -0.158 4.158 13 N -0.571 5.571 14 C 0.116 3.884 15 C -0.359 4.359 16 H 0.050 0.950 17 C -0.014 4.014 18 N -0.902 5.902 19 Si 1.072 2.928 20 H -0.291 1.291 21 H -0.288 1.288 22 H -0.292 1.292 23 C -0.205 4.205 24 C 0.115 3.885 25 O -0.307 6.307 26 C 0.026 3.974 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.136 0.864 31 H 0.146 0.854 32 H 0.406 0.594 33 H 0.053 0.947 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.017 0.983 37 H 0.015 0.985 38 H 0.065 0.935 39 H 0.271 0.729 40 H 0.136 0.864 41 H 0.054 0.946 42 H 0.098 0.902 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.443 -19.327 8.354 21.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.028 3.972 4 C -0.171 4.171 5 C -0.139 4.139 6 C 0.067 3.933 7 N -0.331 5.331 8 C 0.280 3.720 9 O -0.376 6.376 10 C 0.044 3.956 11 H 0.111 0.889 12 C -0.218 4.218 13 N -0.292 5.292 14 C -0.029 4.029 15 C -0.488 4.488 16 H 0.068 0.932 17 C -0.218 4.218 18 N -0.540 5.540 19 Si 0.901 3.099 20 H -0.217 1.217 21 H -0.215 1.215 22 H -0.220 1.220 23 C -0.227 4.227 24 C 0.069 3.931 25 O -0.220 6.220 26 C -0.069 4.069 27 H 0.072 0.928 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.154 0.846 31 H 0.163 0.837 32 H 0.241 0.759 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.036 0.964 37 H 0.034 0.966 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.154 0.846 41 H 0.072 0.928 42 H 0.116 0.884 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.412 -18.367 6.889 19.620 hybrid contribution 0.699 -1.052 1.252 1.778 sum 1.111 -19.419 8.141 21.085 Atomic orbital electron populations 1.23026 0.78904 1.03618 1.01266 1.86140 1.20714 1.25977 1.89596 1.18159 0.88996 0.85149 1.04882 1.20978 0.99916 0.90983 1.05206 1.21124 0.93281 0.98255 1.01274 1.17508 0.91661 0.84840 0.99334 1.44054 1.27457 1.08507 1.53083 1.23086 0.87273 0.85851 0.75795 1.90612 1.20011 1.82053 1.44933 1.20411 0.94623 0.86900 0.93663 0.88859 1.22254 1.01335 1.01708 0.96490 1.43546 1.13257 1.47900 1.24453 1.21157 0.86466 1.00203 0.95039 1.19873 1.37705 0.94967 0.96286 0.93203 1.25995 0.98429 0.91482 1.05850 1.70726 1.47186 1.34680 1.01406 0.83450 0.76761 0.75064 0.74631 1.21659 1.21490 1.21956 1.20741 1.00070 0.90195 1.11644 1.17856 0.88061 0.85417 1.01756 1.86163 1.18546 1.28136 1.89188 1.23050 0.78871 1.03670 1.01311 0.92754 0.88476 0.92845 0.84639 0.83661 0.75868 0.92793 0.93591 0.91200 0.96441 0.96631 0.91651 0.91833 0.84582 0.92770 0.88354 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.10 10.28 -34.55 -0.36 -4.45 16 3 C 0.07 1.04 6.70 -39.12 -0.26 0.78 16 4 C -0.15 -2.08 9.03 -39.48 -0.36 -2.43 16 5 C -0.12 -1.87 8.71 -39.38 -0.34 -2.21 16 6 C 0.16 2.43 6.31 -83.64 -0.53 1.90 16 7 N -0.68 -10.03 5.27 -9.84 -0.05 -10.09 16 8 C 0.49 9.40 6.91 -10.99 -0.08 9.33 16 9 O -0.50 -11.43 12.05 5.55 0.07 -11.36 16 10 C 0.16 3.15 3.14 -69.08 -0.22 2.93 16 11 H 0.09 1.83 7.89 -51.93 -0.41 1.42 16 12 C -0.16 -2.65 9.06 37.16 0.34 -2.31 16 13 N -0.57 -14.38 2.26 -174.80 -0.39 -14.77 16 14 C 0.12 2.89 8.70 59.85 0.52 3.41 16 15 C -0.36 -10.04 9.29 -15.06 -0.14 -10.18 16 16 H 0.05 1.42 7.95 -52.48 -0.42 1.00 16 17 C -0.01 -0.38 4.79 -17.43 -0.08 -0.46 16 18 N -0.90 -26.49 12.33 55.49 0.68 -25.80 16 19 Si 1.07 25.36 29.99 -169.99 -5.10 20.26 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 C -0.21 -2.66 8.95 -39.27 -0.35 -3.01 16 24 C 0.12 1.59 6.70 -39.15 -0.26 1.33 16 25 O -0.31 -3.94 10.28 -34.34 -0.35 -4.30 16 26 C 0.03 0.22 9.81 101.05 0.99 1.21 16 27 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 28 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 30 H 0.14 1.53 6.29 -52.48 -0.33 1.20 16 31 H 0.15 2.55 6.18 -52.49 -0.32 2.22 16 32 H 0.41 4.54 8.07 -40.82 -0.33 4.21 16 33 H 0.05 0.93 6.68 -51.93 -0.35 0.59 16 34 H 0.05 0.58 7.43 -51.93 -0.39 0.19 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.02 0.45 7.05 -51.93 -0.37 0.08 16 37 H 0.02 0.34 6.44 -51.93 -0.33 0.01 16 38 H 0.07 1.77 5.63 -51.93 -0.29 1.48 16 39 H 0.27 7.95 7.21 -40.82 -0.29 7.65 16 40 H 0.14 1.39 6.29 -52.49 -0.33 1.06 16 41 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 LS Contribution 349.86 15.07 5.27 5.27 Total: -1.00 -34.50 349.86 -5.82 -40.33 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.82 Total: 3.42 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 0.22 Total: 1.50 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 0.24 Total: -50.66 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.64 Total: -20.11 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.10 Total: 20.26 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.50 -5.82 -40.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299696303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.802 kcal (2) G-P(sol) polarization free energy of solvation -34.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds