Wall clock time and date at job start Fri Apr 10 2020 22:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36065 * 117.00036 * 2 1 4 4 C 1.38557 * 120.00363 * 0.02562 * 3 2 1 5 5 C 1.38187 * 120.07134 * 179.69909 * 4 3 2 6 6 C 1.38845 * 120.06936 * 0.55152 * 5 4 3 7 7 N 1.40100 * 119.99630 * 179.72379 * 6 5 4 8 8 C 1.34777 * 119.99861 * 324.73091 * 7 6 5 9 9 O 1.21293 * 119.99959 * 6.31924 * 8 7 6 10 10 C 1.50695 * 120.00047 * 186.32488 * 8 7 6 11 11 H 1.09003 * 109.47372 * 59.99313 * 10 8 7 12 12 C 1.53007 * 109.46918 * 299.99806 * 10 8 7 13 13 N 1.46505 * 109.47526 * 179.97438 * 10 8 7 14 14 C 1.46498 * 119.99704 * 59.99387 * 13 10 8 15 15 C 1.36937 * 120.00081 * 240.00030 * 13 10 8 16 16 H 1.08010 * 119.99883 * 37.82839 * 15 13 10 17 17 C 1.38811 * 119.99986 * 217.82926 * 15 13 10 18 18 N 1.31620 * 119.99999 * 25.94995 * 17 15 13 19 19 Si 1.86800 * 119.99898 * 205.67260 * 17 15 13 20 20 H 1.48498 * 109.47162 * 0.02562 * 19 17 15 21 21 H 1.48509 * 109.46619 * 119.99721 * 19 17 15 22 22 H 1.48494 * 109.47157 * 239.99718 * 19 17 15 23 23 C 1.38811 * 120.00916 * 359.44822 * 6 5 4 24 24 C 1.38502 * 119.92854 * 0.27255 * 23 6 5 25 25 O 1.36000 * 120.03594 * 179.97438 * 24 23 6 26 26 C 1.42898 * 116.99754 * 0.02562 * 25 24 23 27 27 H 1.08997 * 109.46682 * 59.99942 * 1 2 3 28 28 H 1.08998 * 109.46669 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46893 * 300.00055 * 1 2 3 30 30 H 1.08005 * 119.96299 * 359.97438 * 4 3 2 31 31 H 1.07993 * 119.96498 * 180.29251 * 5 4 3 32 32 H 0.96998 * 120.00023 * 144.72839 * 7 6 5 33 33 H 1.09003 * 109.46697 * 299.99921 * 12 10 8 34 34 H 1.08996 * 109.47205 * 60.00267 * 12 10 8 35 35 H 1.09004 * 109.47149 * 179.97438 * 12 10 8 36 36 H 1.09004 * 109.47110 * 273.24884 * 14 13 10 37 37 H 1.08999 * 109.47318 * 33.25215 * 14 13 10 38 38 H 1.09005 * 109.46844 * 153.25187 * 14 13 10 39 39 H 0.97004 * 119.99574 * 3.92438 * 18 17 15 40 40 H 1.07998 * 120.03534 * 180.25486 * 23 6 5 41 41 H 1.08995 * 109.47447 * 60.00067 * 26 25 24 42 42 H 1.09002 * 109.46743 * 179.97438 * 26 25 24 43 43 H 1.09006 * 109.46912 * 299.99665 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2123 0.0000 4 6 1.2922 2.3744 0.0005 5 6 1.9181 3.6064 0.0068 6 6 3.3045 3.6824 0.0010 7 7 3.9374 4.9323 0.0016 8 6 3.3888 5.9658 -0.6673 9 8 2.2927 5.8474 -1.1732 10 6 4.1371 7.2683 -0.7869 11 1 5.0848 7.0974 -1.2976 12 6 4.4050 7.8326 0.6099 13 7 3.3347 8.2240 -1.5545 14 6 2.0089 8.6202 -1.0732 15 6 3.8238 8.7467 -2.7218 16 1 4.4004 8.1259 -3.3917 17 6 3.5785 10.0744 -3.0442 18 7 3.3534 10.9526 -2.0900 19 14 3.5754 10.6162 -4.8319 20 1 3.8584 9.4478 -5.7037 21 1 2.2451 11.1794 -5.1761 22 1 4.6196 11.6519 -5.0370 23 6 4.0635 2.5202 0.0005 24 6 3.4364 1.2853 0.0001 25 8 4.1779 0.1453 -0.0010 26 6 5.5989 0.2957 -0.0010 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2137 2.3173 0.0005 31 1 1.3283 4.5110 0.0120 32 1 4.7704 5.0539 0.4834 33 1 3.4573 8.0035 1.1206 34 1 5.0023 7.1215 1.1806 35 1 4.9467 8.7745 0.5235 36 1 1.2648 7.9088 -1.4314 37 1 2.0063 8.6310 0.0168 38 1 1.7693 9.6157 -1.4469 39 1 3.4152 10.6845 -1.1598 40 1 5.1419 2.5789 0.0002 41 1 5.9063 0.8441 0.8894 42 1 6.0684 -0.6880 -0.0014 43 1 5.9061 0.8457 -0.8906 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299696303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:06:01 Heat of formation + Delta-G solvation = -72.366145 kcal Electronic energy + Delta-G solvation = -25678.879379 eV Core-core repulsion = 21918.477284 eV Total energy + Delta-G solvation = -3760.402095 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.91892 -40.91332 -39.41571 -38.34578 -37.27290 -35.36452 -34.02884 -31.42652 -31.28893 -30.12270 -28.12677 -28.07553 -27.83696 -25.75076 -24.32168 -23.33585 -22.65546 -21.00331 -19.74268 -19.41451 -18.69389 -18.27881 -17.38122 -17.11085 -16.99825 -16.36288 -16.14392 -16.07264 -15.78397 -15.56936 -15.46453 -15.37651 -15.31877 -14.28287 -14.10748 -13.84684 -13.68037 -13.40027 -13.12766 -13.00218 -12.83857 -12.81684 -12.47087 -12.41081 -12.36001 -12.32298 -12.07774 -12.06517 -11.90343 -11.48888 -10.96352 -10.74360 -10.41110 -9.65967 -8.90934 -8.59172 -8.22996 -5.58038 0.14390 0.31345 1.57709 1.62549 1.65205 1.82666 1.98188 2.32351 2.36665 2.62085 2.66875 3.18803 3.44356 3.70614 3.85066 4.01967 4.09943 4.21275 4.24827 4.30086 4.38421 4.39235 4.42393 4.44441 4.49167 4.56700 4.68417 4.73187 4.76969 4.80061 4.91631 5.02372 5.17819 5.21641 5.25922 5.31060 5.35245 5.74168 5.86682 6.06075 6.37253 6.44101 6.56437 7.00734 7.24103 7.68608 8.14083 8.92359 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.021033 B = 0.003127 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.919103 B = 8951.665305 C = 9270.947062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.326 6.326 3 C 0.068 3.932 4 C -0.152 4.152 5 C -0.138 4.138 6 C 0.143 3.857 7 N -0.661 5.661 8 C 0.498 3.502 9 O -0.547 6.547 10 C 0.151 3.849 11 H 0.098 0.902 12 C -0.146 4.146 13 N -0.590 5.590 14 C 0.131 3.869 15 C -0.369 4.369 16 H 0.039 0.961 17 C -0.058 4.058 18 N -0.923 5.923 19 Si 1.116 2.884 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.282 1.282 23 C -0.192 4.192 24 C 0.108 3.892 25 O -0.323 6.323 26 C 0.015 3.985 27 H 0.057 0.943 28 H 0.121 0.879 29 H 0.064 0.936 30 H 0.154 0.846 31 H 0.122 0.878 32 H 0.425 0.575 33 H 0.046 0.954 34 H 0.095 0.905 35 H 0.054 0.946 36 H 0.002 0.998 37 H 0.034 0.966 38 H 0.039 0.961 39 H 0.260 0.740 40 H 0.166 0.834 41 H 0.070 0.930 42 H 0.120 0.880 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.784 -21.233 8.909 23.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.240 6.240 3 C 0.022 3.978 4 C -0.171 4.171 5 C -0.159 4.159 6 C 0.048 3.952 7 N -0.309 5.309 8 C 0.285 3.715 9 O -0.422 6.422 10 C 0.040 3.960 11 H 0.116 0.884 12 C -0.205 4.205 13 N -0.312 5.312 14 C -0.015 4.015 15 C -0.499 4.499 16 H 0.057 0.943 17 C -0.257 4.257 18 N -0.562 5.562 19 Si 0.940 3.060 20 H -0.205 1.205 21 H -0.214 1.214 22 H -0.208 1.208 23 C -0.213 4.213 24 C 0.061 3.939 25 O -0.237 6.237 26 C -0.079 4.079 27 H 0.076 0.924 28 H 0.139 0.861 29 H 0.083 0.917 30 H 0.171 0.829 31 H 0.139 0.861 32 H 0.264 0.736 33 H 0.065 0.935 34 H 0.114 0.886 35 H 0.073 0.927 36 H 0.021 0.979 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.184 0.816 41 H 0.088 0.912 42 H 0.138 0.862 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.804 -20.331 7.498 21.745 hybrid contribution 0.290 -0.696 1.141 1.367 sum 2.094 -21.027 8.639 22.828 Atomic orbital electron populations 1.23331 0.76820 1.05537 1.01988 1.86124 1.22952 1.25575 1.89391 1.18391 0.89609 0.85511 1.04318 1.21091 1.00923 0.90282 1.04794 1.21048 0.93869 0.98106 1.02879 1.17603 0.91634 0.85141 1.00861 1.43598 1.27681 1.07629 1.52007 1.22616 0.86602 0.86316 0.75928 1.90612 1.21744 1.82777 1.47082 1.20619 0.94070 0.86368 0.94976 0.88427 1.22108 1.01594 1.02110 0.94673 1.43650 1.13777 1.48917 1.24810 1.20908 0.86512 0.98097 0.95937 1.20019 1.37323 0.94937 0.97586 0.94308 1.27221 0.98034 0.91836 1.08633 1.70826 1.49079 1.35119 1.01175 0.82856 0.76920 0.75327 0.70853 1.20452 1.21431 1.20821 1.20901 1.01355 0.88986 1.10016 1.18075 0.88391 0.86085 1.01324 1.86156 1.20764 1.27830 1.88951 1.23392 0.76575 1.05594 1.02350 0.92392 0.86060 0.91728 0.82898 0.86058 0.73623 0.93534 0.88596 0.92674 0.97943 0.94770 0.94302 0.92980 0.81641 0.91170 0.86166 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -8.15 10.28 -80.32 -0.83 -8.97 16 3 C 0.07 1.83 6.70 22.57 0.15 1.98 16 4 C -0.15 -4.08 9.03 22.33 0.20 -3.88 16 5 C -0.14 -4.35 8.71 22.40 0.20 -4.16 16 6 C 0.14 4.08 6.31 38.10 0.24 4.32 16 7 N -0.66 -18.24 5.27 -303.43 -1.60 -19.84 16 8 C 0.50 18.75 6.91 87.66 0.61 19.35 16 9 O -0.55 -25.26 12.05 -3.07 -0.04 -25.30 16 10 C 0.15 5.96 3.14 44.24 0.14 6.10 16 11 H 0.10 3.74 7.89 -2.39 -0.02 3.72 16 12 C -0.15 -4.64 9.06 71.98 0.65 -3.99 16 13 N -0.59 -30.14 2.26 -706.95 -1.59 -31.73 16 14 C 0.13 6.68 8.70 127.77 1.11 7.79 16 15 C -0.37 -20.93 9.29 84.03 0.78 -20.14 16 16 H 0.04 2.24 7.95 -2.91 -0.02 2.22 16 17 C -0.06 -3.30 4.79 84.86 0.41 -2.89 16 18 N -0.92 -55.09 12.33 21.65 0.27 -54.83 16 19 Si 1.12 51.41 29.99 68.60 2.06 53.46 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 21 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 C -0.19 -4.52 8.95 22.47 0.20 -4.32 16 24 C 0.11 2.78 6.70 22.55 0.15 2.93 16 25 O -0.32 -7.57 10.28 -79.59 -0.82 -8.39 16 26 C 0.02 0.20 9.81 113.37 1.11 1.31 16 27 H 0.06 0.88 7.66 -2.39 -0.02 0.86 16 28 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.06 0.88 7.66 -2.39 -0.02 0.86 16 30 H 0.15 3.36 6.29 -2.91 -0.02 3.34 16 31 H 0.12 4.42 6.18 -2.91 -0.02 4.40 16 32 H 0.42 8.17 8.07 -92.71 -0.75 7.42 16 33 H 0.05 1.55 6.68 -2.39 -0.02 1.53 16 34 H 0.10 2.07 7.43 -2.39 -0.02 2.05 16 35 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 36 H 0.00 0.13 7.05 -2.38 -0.02 0.11 16 37 H 0.03 1.56 6.44 -2.39 -0.02 1.55 16 38 H 0.04 2.18 5.63 -2.38 -0.01 2.16 16 39 H 0.26 15.65 7.21 -92.71 -0.67 14.98 16 40 H 0.17 2.77 6.29 -2.91 -0.02 2.75 16 41 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 42 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.06 0.76 7.66 -2.38 -0.02 0.74 16 Total: -1.00 -76.69 349.86 4.91 -71.79 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.40 Total: 18.00 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 7.06 Total: 5.81 kcal Atomic # 7 Polarization: -103.47 SS G_CDS: -2.93 Total: -106.39 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -1.68 Total: -42.66 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 2.06 Total: 53.46 kcal Total: -76.69 4.91 -71.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299696303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.579 kcal (2) G-P(sol) polarization free energy of solvation -76.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds