Wall clock time and date at job start Fri Apr 10 2020 22:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35995 * 116.99762 * 2 1 4 4 C 1.38566 * 120.07694 * 359.72829 * 3 2 1 5 5 C 1.38242 * 120.00244 * 179.74111 * 4 3 2 6 6 C 1.38253 * 120.14084 * 0.51373 * 5 4 3 7 7 C 1.50704 * 119.92392 * 179.74530 * 6 5 4 8 8 N 1.46507 * 109.46893 * 270.01951 * 7 6 5 9 9 C 1.46492 * 119.99774 * 269.99703 * 8 7 6 10 10 C 1.34781 * 119.99803 * 90.00087 * 8 7 6 11 11 O 1.21585 * 120.00072 * 359.97438 * 10 8 7 12 12 N 1.34778 * 119.99676 * 180.02562 * 10 8 7 13 13 C 1.46495 * 119.99862 * 179.97438 * 12 10 8 14 14 C 1.52995 * 109.47261 * 179.97438 * 13 12 10 15 15 C 1.50704 * 109.47593 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99547 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00052 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00260 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99684 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47087 * 60.00596 * 19 17 15 21 21 H 1.48507 * 109.47070 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47393 * 300.00280 * 19 17 15 23 23 C 1.38239 * 120.14930 * 359.76180 * 6 5 4 24 24 C 1.38557 * 119.99947 * 359.97438 * 23 6 5 25 25 O 1.35996 * 120.07269 * 180.02562 * 24 23 6 26 26 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47054 * 299.99753 * 1 2 3 28 28 H 1.09000 * 109.47187 * 59.99808 * 1 2 3 29 29 H 1.08001 * 119.99561 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.92834 * 180.25090 * 5 4 3 31 31 H 1.09001 * 109.47098 * 30.01841 * 7 6 5 32 32 H 1.08999 * 109.47579 * 150.01801 * 7 6 5 33 33 H 1.09003 * 109.47004 * 90.00629 * 9 8 7 34 34 H 1.08998 * 109.47362 * 209.99907 * 9 8 7 35 35 H 1.08995 * 109.47683 * 330.00330 * 9 8 7 36 36 H 0.97005 * 119.99995 * 359.97438 * 12 10 8 37 37 H 1.09000 * 109.47078 * 300.00029 * 13 12 10 38 38 H 1.08998 * 109.47386 * 59.99463 * 13 12 10 39 39 H 1.09000 * 109.47232 * 300.00099 * 14 13 12 40 40 H 1.09006 * 109.46955 * 59.99517 * 14 13 12 41 41 H 0.96998 * 119.99790 * 179.97438 * 18 17 15 42 42 H 1.08000 * 119.99528 * 180.02562 * 23 6 5 43 43 H 0.96697 * 113.99867 * 269.97653 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 -0.0057 5 6 1.9224 3.6058 -0.0003 6 6 3.3029 3.6798 0.0001 7 6 3.9837 5.0244 0.0002 8 7 4.2042 5.4602 -1.3810 9 6 5.4463 5.1050 -2.0716 10 6 3.2642 6.1879 -2.0163 11 8 2.2331 6.4823 -1.4432 12 7 3.4669 6.5883 -3.2871 13 6 2.4451 7.3788 -3.9778 14 6 2.9209 7.7001 -5.3959 15 6 1.8695 8.5127 -6.1067 16 1 0.9536 8.7743 -5.5977 17 6 2.0773 8.9232 -7.4064 18 7 3.1928 8.6051 -8.0262 19 14 0.7736 9.9299 -8.2876 20 1 0.5391 11.1944 -7.5453 21 1 1.2356 10.2418 -9.6641 22 1 -0.4904 9.1533 -8.3543 23 6 4.0602 2.5234 0.0000 24 6 3.4359 1.2864 0.0001 25 8 4.1795 0.1478 0.0006 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.2147 2.3196 -0.0105 30 1 1.3342 4.5115 -0.0006 31 1 3.3538 5.7505 0.5141 32 1 4.9418 4.9465 0.5140 33 1 5.3167 4.1525 -2.5856 34 1 5.6923 5.8793 -2.7983 35 1 6.2542 5.0188 -1.3451 36 1 4.2894 6.3531 -3.7445 37 1 1.5166 6.8099 -4.0259 38 1 2.2743 8.3074 -3.4331 39 1 3.8493 8.2692 -5.3475 40 1 3.0920 6.7716 -5.9408 41 1 3.3387 8.8935 -8.9407 42 1 5.1385 2.5841 0.0007 43 1 4.3945 -0.1819 -0.8827 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273338343.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:07:36 Heat of formation + Delta-G solvation = -106.994961 kcal Electronic energy + Delta-G solvation = -24921.650044 eV Core-core repulsion = 21159.746331 eV Total energy + Delta-G solvation = -3761.903713 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 308.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.58031 -40.99049 -38.90426 -37.93737 -36.62085 -36.23728 -34.79841 -32.33117 -31.22525 -30.89260 -28.80793 -27.65516 -27.13089 -25.73446 -23.61347 -23.04822 -22.42329 -20.99257 -19.52563 -18.99094 -18.54493 -18.46519 -17.47524 -17.26149 -17.12361 -16.72920 -16.49270 -16.00490 -15.54763 -15.39883 -15.30115 -14.94764 -14.88630 -14.65359 -14.25868 -13.97564 -13.48667 -13.40913 -13.25285 -13.11671 -13.00730 -12.91210 -12.52806 -12.47861 -12.22271 -12.17824 -12.03358 -11.64384 -11.60521 -11.47219 -11.11526 -10.59400 -10.11813 -9.87148 -9.51294 -9.10233 -8.23519 -6.33878 0.20178 0.23186 1.42135 1.44530 1.52343 1.77097 2.19046 2.26799 2.40987 2.61295 3.11217 3.16437 3.22301 3.78636 3.85459 4.01832 4.25410 4.31683 4.31767 4.35904 4.37717 4.48446 4.52570 4.58772 4.65931 4.69438 4.79881 4.87018 4.90405 4.93092 5.12336 5.23103 5.31774 5.49271 5.53389 5.59673 5.62596 5.67327 5.79849 5.97180 6.17768 6.21755 6.78978 6.85479 7.03122 7.35395 7.61186 8.88255 Molecular weight = 308.16amu Principal moments of inertia in cm(-1) A = 0.017517 B = 0.002691 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.083151 B =10401.679160 C =11062.811055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C 0.090 3.910 4 C -0.203 4.203 5 C -0.077 4.077 6 C -0.130 4.130 7 C 0.177 3.823 8 N -0.625 5.625 9 C 0.072 3.928 10 C 0.696 3.304 11 O -0.631 6.631 12 N -0.736 5.736 13 C 0.162 3.838 14 C 0.026 3.974 15 C -0.548 4.548 16 H 0.059 0.941 17 C 0.008 3.992 18 N -0.926 5.926 19 Si 0.964 3.036 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.269 1.269 23 C -0.084 4.084 24 C 0.058 3.942 25 O -0.497 6.497 26 H 0.122 0.878 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.142 0.858 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.124 0.876 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.404 0.596 37 H 0.040 0.960 38 H 0.043 0.957 39 H 0.008 0.992 40 H 0.006 0.994 41 H 0.266 0.734 42 H 0.162 0.838 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.879 -16.515 16.965 23.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.240 6.240 3 C 0.044 3.956 4 C -0.221 4.221 5 C -0.096 4.096 6 C -0.132 4.132 7 C 0.054 3.946 8 N -0.361 5.361 9 C -0.070 4.070 10 C 0.397 3.603 11 O -0.513 6.513 12 N -0.392 5.392 13 C 0.037 3.963 14 C -0.012 4.012 15 C -0.586 4.586 16 H 0.077 0.923 17 C -0.191 4.191 18 N -0.566 5.566 19 Si 0.789 3.211 20 H -0.193 1.193 21 H -0.205 1.205 22 H -0.194 1.194 23 C -0.102 4.102 24 C 0.013 3.987 25 O -0.308 6.308 26 H 0.140 0.860 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.160 0.840 30 H 0.136 0.864 31 H 0.094 0.906 32 H 0.142 0.858 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.126 0.874 36 H 0.241 0.759 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.027 0.973 40 H 0.025 0.975 41 H 0.075 0.925 42 H 0.179 0.821 43 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 3.297 -16.417 17.802 24.440 hybrid contribution -0.673 0.503 -1.528 1.744 sum 2.624 -15.914 16.274 22.912 Atomic orbital electron populations 1.23347 0.76740 1.05622 1.02019 1.86100 1.23125 1.26173 1.88594 1.19697 0.92386 0.85087 0.98398 1.21319 1.00946 0.91602 1.08278 1.21111 0.95089 0.97160 0.96224 1.20182 0.93417 0.96047 1.03574 1.20298 1.02020 0.91070 0.81185 1.47118 1.18743 1.55436 1.14831 1.22004 0.85337 1.00913 0.98767 1.16166 0.83534 0.79015 0.81551 1.90825 1.29030 1.63914 1.67543 1.45400 1.23117 1.57983 1.12690 1.21034 0.89568 0.92946 0.92731 1.19105 0.96248 0.95832 0.90005 1.21437 1.04069 1.34352 0.98738 0.92322 1.25858 0.97844 0.97179 0.98204 1.70049 1.26540 1.47037 1.12949 0.85511 0.79063 0.79136 0.77415 1.19319 1.20547 1.19379 1.21297 1.01446 0.89312 0.98185 1.17876 0.86169 0.87241 1.07428 1.84827 1.71505 1.39499 1.34972 0.85982 0.91848 0.92278 0.84005 0.86429 0.90603 0.85821 0.92104 0.91371 0.87355 0.75876 0.94151 0.93858 0.97328 0.97526 0.92523 0.82053 0.73990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.36 16 2 O -0.33 -7.23 10.28 -79.62 -0.82 -8.05 16 3 C 0.09 2.14 6.70 22.57 0.15 2.29 16 4 C -0.20 -4.79 9.04 22.35 0.20 -4.58 16 5 C -0.08 -1.99 9.69 22.27 0.22 -1.78 16 6 C -0.13 -2.89 5.46 -19.86 -0.11 -3.00 16 7 C 0.18 3.63 5.57 85.63 0.48 4.11 16 8 N -0.62 -15.19 2.86 -869.31 -2.48 -17.67 16 9 C 0.07 1.16 10.25 127.77 1.31 2.47 16 10 C 0.70 24.21 8.28 179.05 1.48 25.69 16 11 O -0.63 -26.55 15.43 -3.98 -0.06 -26.61 16 12 N -0.74 -26.47 5.42 -478.55 -2.59 -29.06 16 13 C 0.16 7.12 5.61 86.38 0.48 7.61 16 14 C 0.03 1.30 5.09 29.85 0.15 1.45 16 15 C -0.55 -30.74 9.11 25.60 0.23 -30.51 16 16 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 17 C 0.01 0.45 5.46 84.65 0.46 0.91 16 18 N -0.93 -54.22 13.29 21.45 0.28 -53.93 16 19 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 23 C -0.08 -1.58 9.63 22.35 0.22 -1.36 16 24 C 0.06 1.27 6.72 22.57 0.15 1.42 16 25 O -0.50 -9.60 13.29 -79.64 -1.06 -10.66 16 26 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.06 0.80 7.68 -2.38 -0.02 0.78 16 28 H 0.06 0.81 7.65 -2.39 -0.02 0.79 16 29 H 0.14 2.85 6.30 -2.91 -0.02 2.83 16 30 H 0.12 3.46 7.56 -2.91 -0.02 3.44 16 31 H 0.08 1.86 7.36 -2.39 -0.02 1.84 16 32 H 0.12 1.54 7.84 -2.39 -0.02 1.52 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.07 1.16 6.36 -2.39 -0.02 1.14 16 35 H 0.11 0.99 7.89 -2.39 -0.02 0.97 16 36 H 0.40 12.55 6.20 -92.70 -0.58 11.98 16 37 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.01 0.44 8.14 -2.39 -0.02 0.43 16 40 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 41 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 42 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 43 H 0.40 4.33 9.06 -74.06 -0.67 3.66 16 Total: -1.00 -74.97 364.71 1.63 -73.34 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -0.21 Total: 20.97 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 6.54 Total: 6.07 kcal Atomic # 7 Polarization: -95.88 SS G_CDS: -4.79 Total: -100.67 kcal Atomic # 8 Polarization: -43.38 SS G_CDS: -1.94 Total: -45.32 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -74.97 1.63 -73.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273338343.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.654 kcal (2) G-P(sol) polarization free energy of solvation -74.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds